|
|
Homology
BLAST of mRNA_H-paniculata_contig3738.9845.1 vs. uniprot
Match: D8LID7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LID7_ECTSI) HSP 1 Score: 92.0 bits (227), Expect = 1.430e-19 Identity = 47/56 (83.93%), Postives = 50/56 (89.29%), Query Frame = 3
Query: 309 MEMQELHVEFKDDGRILLEVKGVKGEECREITEDLIKALGDVIHTENTSEYFEEKV 476
ME+QEL V+F DDGRILLEVKGVKG ECR ITEDLIKALGDVI TENT EYF+EKV
Sbjct: 23 MELQELIVDFTDDGRILLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQEKV 78
BLAST of mRNA_H-paniculata_contig3738.9845.1 vs. uniprot
Match: A0A6H5JNP0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JNP0_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 2.030e-18 Identity = 46/56 (82.14%), Postives = 50/56 (89.29%), Query Frame = 3
Query: 309 MEMQELHVEFKDDGRILLEVKGVKGEECREITEDLIKALGDVIHTENTSEYFEEKV 476
ME+QEL V+F DDGRILLEVKGVKG ECR ITEDLIKALGDVI TENT EYF+E+V
Sbjct: 85 MELQELIVDFTDDGRILLEVKGVKGSECRVITEDLIKALGDVITTENTEEYFQERV 140
BLAST of mRNA_H-paniculata_contig3738.9845.1 vs. uniprot
Match: A0A2I0PSC1_9EURY (Uncharacterized protein n=2 Tax=unclassified Methanomicrobiales TaxID=38064 RepID=A0A2I0PSC1_9EURY) HSP 1 Score: 55.8 bits (133), Expect = 9.270e-7 Identity = 26/57 (45.61%), Postives = 40/57 (70.18%), Query Frame = 3
Query: 309 MEMQELHVEFKDDGRILLEVKGVKGEECREITEDLIKALGDVIHTENTSEYFEEKVT 479
M MQEL + ++GR+L+ V GVKGE+C +T++L A+GDV +S+Y+E+ VT
Sbjct: 1 MTMQELEITIDNEGRVLIHVNGVKGEDCLALTKNLENAVGDVQERSFSSDYYEQPVT 57
BLAST of mRNA_H-paniculata_contig3738.9845.1 vs. uniprot
Match: A0A7S0ND27_9EUKA (Hypothetical protein n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0ND27_9EUKA) HSP 1 Score: 53.9 bits (128), Expect = 1.460e-5 Identity = 29/62 (46.77%), Postives = 39/62 (62.90%), Query Frame = 3
Query: 291 GQQEVRMEMQELHVEFKDDGRILLEVKGVKGEECREITEDLIKALGDVIHTENTSEYFEEKV 476
G RMEMQEL DGR+ V GVKG +C+++T + + LG+V HTE T+E FE+ V
Sbjct: 30 GLSAPRMEMQELEFIIYPDGRVEERVLGVKGADCQKLTLKIEQELGEVYHTEATTEMFEQPV 91
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 64.3 |
| Seed ortholog evalue | 6.9e-08 |
| Seed eggNOG ortholog | 55529.EKX53413 |
| Hectar predicted targeting category | chloroplast |
| EggNOG free text desc. | Protein of unknown function (DUF2997) |
| EggNOG OGs | 2E44G@1,2SEIZ@2759 |
| Ec32 ortholog description | Protein of unknown function DUF2997 |
| Ec32 ortholog | Ec-18_004050.1 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Exons | 3 |
| Model size | 1025 |
| Cds size | 561 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3738.9845.1 >prot_H-paniculata_contig3738.9845.1 ID=prot_H-paniculata_contig3738.9845.1|Name=mRNA_H-paniculata_contig3738.9845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
MVTCRVLRSLCMIATSSLVYPSTDGFVTTPVLSSVSSNRNAHLTMSRSSE GLRNHSNSVRLREGAGMSIASSTALFMSDYDGGYDGGGQQEVRMEMQELH VEFKDDGRILLEVKGVKGEECREITEDLIKALGDVIHTENTSEYFEEKVT EANVAVLVKSGFLRTQRNKTRSDRRRAYGRVQMRYA* back to topmRNA from alignment at H-paniculata_contig3738:9568..15220- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3738.9845.1 ID=mRNA_H-paniculata_contig3738.9845.1|Name=mRNA_H-paniculata_contig3738.9845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5653bp|location=Sequence derived from alignment at H-paniculata_contig3738:9568..15220- (Halopteris paniculata Hal_grac_a_UBK monoicous) GCTGCTCAGGCAAGCGAAATATTTAAAGCATGGTAACCTGCCGAGTGCTA
CGATCCCTATGCATGATAGCCACCTCCTCCCTGGTATACCCGTCGACAGA
CGGTTTCGTTACAACACCTGTTCTGTCATCAGTATCTTCGAATCGAAACG
CTCACCTGACCATGTCAAGATCATCAGAAGGCCTACGTAATCACTCGAAC
AGCGTTCGTTTGAGAGAAGGAGCCGGGATGTCTATTGCTAGCAGCACGGC
GCTTTTTATGTCAGATTATGACGGGGGTTACGATGGGGGAGGACAACAGG
AAGTTCGGATGGAGATGCAGGAGCTTCACGTTGAGTTCAAGGATGACGGG
CGGATTTTACTCGAGGTCAAAGGTGTCAAGGTGCGAGACAATGCCCCACC
ATCGTTCAAATAATATAATGAGTTCTGAAGCGCATGGACACCTGCAGTAG
TAGTACTGTGTGACATGTACCGTTGTATTCGATTGTCGATCGTGTTGAAG
TACCGATGTTCAATAGTCTTCTTAGTACTCTGCTGTACTGTATGTACCAC
AAGCTTGTGTTTCTCCTCAAACACACAAGAATGTGAGGGTGGAAGGATGG
TGAGCAATTCTAGTCAAGCACGCTGCCACGTCTGTACATACTACATACAA
GGTTTCAAACTCTTGGAGTGAGGTTAAACTTCGACCGTGAGGACAACCAC
GCCCTTTCCATTGGAGCCGATGAGGAGAATGGAAGCCTCTAAACTATGCG
GCCGTCATGATATCTCTGCAACTGTAGGTTGAACGCCGGTTTTCCGTTCT
GTTAGTTGAGTCGACATCTGTTCCTTGCCAACACAGCCAACCCGTATCTA
GGTATCCATCAATTCCCGCATCCGGAGCGTCTGTGTGATATTTGCCGTTA
TTTTTCTTCTCTTTAGTTCCTACGAAAGAGTAGTCAAGCTTCACAACTCT
GCAGCTACAAGTACCGGATCCTCACCTCGGTTTCTCTGTAGCTGCTGACA
CGCTATCACAAACATAAATTTAAGGGGTGCGTACTTGCAGGGAGTTATCT
TTTTACCTGTAGGTGACCGTTAAGGGCGACCCTAATACTAGTACATCGCT
TCGACAGTATGGTTATGGATAAACTAGTTTAGGGTACGGCTACTCTTGAC
ATGCTACCCCTACATGGGAAAAGGATTGTGATAGATACTTCCACATCCGC
TAACAAGATATGTGAAAGTACATCCTAAGCCTTTTGTTGATTGTCATCCC
TCTTAACCAAAACACCAAAAGCAACCCCGGCCTGAAACAATAGCAAAAAT
GCTTTTATTCTTTCACAACCTAAAGATACCTCTTGTGATGTAGCACTAGC
GTAATATATAAAAGGTTAATTTCCCCCCATAGGATTCAGGGCACCTTCTA
CAAAAGGTCTTGAAATGGATGGGAATACATTTTTAGTGATGAGTTCCCTT
GCAACCCCTGCCCCCCCTTTATTTGCTGTGATTTTCCTGATGAGGGTAAG
CAACGTTTGACTTTATTTCGGTTGCCCCCGCCTCCCCATATTCATCCCCG
TGCGTTTTATCCCAGGGCGAAGAGTGCAGGGAAATTACGGAGGATCTAAT
CAAAGCCCTTGGGGACGTGATCCACACAGAGAACACTAGCGAGTACTTTG
AAGAGAAGGTCACCGAGGCCAACGTGGTGAGTTAGCAGTGGACCCTACGC
GTTTTCAGACTATGGTAATAGCTAACTTGTCTTGAGGCAAAATTCGAACT
ATATGTTGAGTAAAATGTACAAGAACACCGCGAAAAGTTCACATTTAACT
CATACTCTTGAGTATATTTGTAGATATGTATGTGAAATTCAGACCAAGCA
ATCTACGCCTTCTCCAGTACGAATGTAAAAGTGCCACTATCTCAAGACCA
AGCGAACCATTTCTCAGCCTCTCACATGTGTGTATGCACCGCGCCCGCAT
ATGCCACCCCTCTCACCTTCCGCATTTTCATGATCCATTCGAATTTTATG
CGATACGTCCATGTTCCCCTCGTATCCCTAACCCTAGTTCTTCCACGCCA
CCCCTACCCAAAACCCTACGAACGTACCTATTCGACGACCAGGAGGGAAT
AAAGGTCGGGAACGAGTGGTCGTACGACTCAACCAAGCCTGAGTGGTGAG
GCGTCAACCGCAATTGACCATGAGCTCAAACATTTGTGACCGCTGACCTG
TCACGGGCGATCGTCTCTGTGACGCCATGGCGACCCTAAACTCTGGCAGG
CTCCTCTTGGATTGCTTCCTTGATGAAGAAACCCGTACTCGATTTGCCGG
ACTTCACCATCAGCATTTCAGTATAGTGAGGGTTACATGTGAATAACTAG
TCGAAATTATGGTTGTGGTGTTTTGATCCGATGCCGGGTCGATGGACGTT
AGAGGGGACTCTTGCTGTGCGGTGGGTTTGGCCTACCGATGTTTGCCGCG
TGCTTCTCAACATGCATGGTGGAGTGCTGGGTAGATGGTTAGCAAGGCTA
TAGTTGTAGGGTATCCCTCACAGCGTCGTTTCCTCGTCTTCGCTATCTTG
TGATTGAGGCTGGTGTGATCATGAACGGGGTAGGTTGTATTTATGGCGTT
GCTCTATTCTTTTTTTCTTCCCTTTGACAGTGGAGCTTCAGAGTACCTTC
TCTGTTGATACACACTTGCGCACAGGGCTTCAGTGAGAGCAAGGAAGGTT
GGTTTGTAAAAGACGGTTGTACCCGGAATCACGAAATTATTTTCAAGTGG
CGGGGGCTTGGCTGCCTCGGGACCAAATTTTAGCACCCACTCTTGGGATT
TGATGGGGGATGACTTTGCATACCACGCTTTCCATGCCTCTTCTTAATTC
AGGATAGTAGTGTTCTCAGTATGTCTTTTTGTCTAAAATGTTTCCAGGTA
TGCCTGGGAATGATATATCTATACGACACTTTGGCTGTTTTTGTTGTTTG
AAGCATTGGTCATCGTAACGTGCAAGTACGTTGTCTACCAGTATTAGATG
GTCAAAACAGGCCAGATTTTGTTCTATTTGCTCTATAAATATAGAGAACG
GTGATATGGAGATTGAGGGGTTTGCGTAGCGCATCAAATGCATGCGATCG
GAGGTATGGTTGGATTAATACACAAGGGGTTGATTATGTCTCACATTCTT
TCGTGTCTACTCAGCGTCAACTAGTACCGAACGAATTGGAGTAGGGCAGC
ATAAATCTTGTCTGATATGCAGTGAGGCTACGAAAAACTCAACTATTTTC
ACGCGACAAACACAGCTACTACTGCAGTTTTCATGTCTCCAGACATGACC
ATCATCTGTCCCAAGAAAACGAAGTGCACGATCGCTTACTTGCACTCGCC
GCATAAAAAAAAACAAGAACGCTTTGGGCTACAACACCATAATAAGATTT
CACTAATACCCTGTCTTGTGCCATGATTTCTATATACTCCCAAAATTCGA
GACGAGCCACTCGACCAACTTCGAGGAATTCCTGCCAGGTCATGACTCGA
AAGCGACACAAATTTTCAGCGCACATTCGATTCCCATCACCTTCAGTCTA
GTACATTATCTCGGGGGTTCGGTGTTTGTTCCCTACTTACTGAAACTGTT
CACCAACCAAGGAAAGTTGTTTGTTTCGTGTTCACTTGTTGGACATGCGT
TGTGACACAAACAATCCTCATTTCTCACCATAGTCCATAGTCACCATCTA
TGACGGGTCAAGGGCTGGCAGTGCCATGGGGTGCCCGGGGAAGGAGGGAG
GAGTCACAAAAATGTAGTCCAAACATTTGGCCCAAAGTATAGAGTCACAT
TTGAGCTGCATTCCTATCCTTTGTAACGATTAACTGGAAGCACTTGTTCA
TGTCGCCGCTCGATGTCGGGGTCACAACCAACGAACAAGACGAGACTCTA
AAATAGAAATCTTCAACTTTCAAACCATCTAAGACGATTGAGATTCTTCC
CACGTCGCCAGCTCATGCTGGAATGGCATGGGCGGGTCCGTTCCGGGCCG
ACGCGCCTTGACCAATTGGAATGCTTCCGTGAAACTGCCCACCCCGCCCG
GCTTTCCCTCTCCTCTGGCCCTCATGACCGCGGCAATGGCCATCGAAGCA
CTGCGGCCCGTCCCGTGGGTGCAGTGGATCATGACCCCTCCAGCGTCCTT
GCCACCTTCCACGAACTTCAAGCTATCCTCCAGATGTGGCGTGATACCCC
CGTTGTCTCCTCCAAAGTTGATTACCCTGAACAGCCCAGCAATACAATAA
ACGCGGAGCGCACCCCAATTTGGGGTTAAACGAGTGCTGAATTTGCTGTT
TACTCTCGTGTACACGGTGCTATTCAGTGTGGGTCTATACTCACTTTAGT
TACTTGGCACCTGCCTCATTCATGCATCATTTTTTATTAATAACGACGGC
ACCCCTATTCAAGTGTTTTTAAAATGCAGCAGCCATTGCAATATATATAT
GTATATATATCATATGAACGACTGACGCCTTGCAAATACAACCCCTCTAT
TTCACCCACCGGTATTCTCATATTAAGCAAACCCTGCCATATCTAGTTGA
ACTAGTACAGCTCTGAAGGTCACATAATAACTATTTTGCACCCCTATTGA
GGTCATGTAGCTGGCTTCAGAGTTAACTAGTATACATCTACCAGAAAAAT
TAGATTGAAAGGGAGCGGGGGGGGCGTACTCATGTCCTGCATGTCGCAGT
TGTAGGCTCATTGACTACGCGTCCTCGGGAGGACAGAGCTTTGTTCCTAT
CGGAGCGATTTCCGATGAGGAGGAAGCGGGGGTCCGAGGAAGGCCAAAAC
ATATTTATGACGGGGGCTACAAGATATTTTAGTTTACCCCACATACGAGC
ACTAGCAACATGCCATCCAGTGACCTCATATTCAAGGCAAGGAGAGCTTG
ACACCTACTTAAACCAGTACGCATGAACTAATACATGAAAATAATATGCA
TCAGACGCTAATTGGACATATGTTTTAATTCCTCCACAGAATACACACGC
CGCCTCGCTTGCATAGGGGTTGAAGCACGACTTGATACTTACTTATACTC
AAAGTCATCCTTGAACTTGGGATCCTTTCCATTAACGGTGAGGATATGCG
TCACCCCGTGCTCCTGCAGGCTGTCCTTGTCAAGAGCGGCTTCCTGAGAA
CGCAAAGGAACAAGACGAGGTCGGATCGCCGGAGAGCATACGGCAGAGTG
CAAATGCGGTATGCTTAACCTTGGGTGGGGCTAGAAGGAGTGAAGCAGGG
CTCTGTGGTGCTGTACTACCCAATGGATACTCACTCATAACCACACGAGC
GGGGGGATGCACTAGTTTATGGGGCAACACGCTGCCTCCCATGTTTGCAC
GTTTGGCGACGATAATATGTAAGAGCATCGGCTGGGGGCACGATCTACAA
CAAATCGAGTCAACGCAAACTCCTGAGAGCTTCATTCATCCGATAGAAAA
CATCATGTGCATTGCAGGGAGAAGAATTATTACAACTCATAATTCGTCGT
CGTTCGAAAGTTACGCTTCACAGTGTCTTCAATCTCTCTCCCTACATATA
GTATACTTATCGAAATTGTTGCGATATGAAGTTACGGCATGTTTGCACTT
TTTGTCTACGGTTTTTCCCGAATTTAAAAGAGAAAATTTTTCATTAAACG
TGC back to topCoding sequence (CDS) from alignment at H-paniculata_contig3738:9568..15220- >mRNA_H-paniculata_contig3738.9845.1 ID=mRNA_H-paniculata_contig3738.9845.1|Name=mRNA_H-paniculata_contig3738.9845.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at H-paniculata_contig3738:9568..15220- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGTAACCTGCCGAGTGCTACGATCCCTATGCATGATAGCCACCTCCTC CCTGGTATACCCGTCGACAGACGGTTTCGTTACAACACCTGTTCTGTCAT CAGTATCTTCGAATCGAAACGCTCACCTGACCATGTCAAGATCATCAGAA GGCCTACGTAATCACTCGAACAGCGTTCGTTTGAGAGAAGGAGCCGGGAT GTCTATTGCTAGCAGCACGGCGCTTTTTATGTCAGATTATGACGGGGGTT ACGATGGGGGAGGACAACAGGAAGTTCGGATGGAGATGCAGGAGCTTCAC GTTGAGTTCAAGGATGACGGGCGGATTTTACTCGAGGTCAAAGGTGTCAA GATGGTAACCTGCCGAGTGCTACGATCCCTATGCATGATAGCCACCTCCT CCCTGGTATACCCGTCGACAGACGGTTTCGTTACAACACCTGTTCTGTCA TCAGTATCTTCGAATCGAAACGCTCACCTGACCATGTCAAGATCATCAGA AGGCCTACGTAATCACTCGAACAGCGTTCGTTTGAGAGAAGGAGCCGGGA TGTCTATTGCTAGCAGCACGGCGCTTTTTATGTCAGATTATGACGGGGGT TACGATGGGGGAGGACAACAGGAAGTTCGGATGGAGATGCAGGAGCTTCA CGTTGAGTTCAAGGATGACGGGCGGATTTTACTCGAGGTCAAAGGTGTCA AGGGCGAAGAGTGCAGGGAAATTACGGAGGATCTAATCAAAGCCCTTGGG GACGTGATCCACACAGAGAACACTAGCGAGTACTTTGAAGAGAAGGTCAC CGAGGCCAACGTGGGCGAAGAGTGCAGGGAAATTACGGAGGATCTAATCA AAGCCCTTGGGGACGTGATCCACACAGAGAACACTAGCGAGTACTTTGAA GAGAAGGTCACCGAGGCCAACGTGGCTGTCCTTGTCAAGAGCGGCTTCCT GAGAACGCAAAGGAACAAGACGAGGTCGGATCGCCGGAGAGCATACGGCA GAGTGCAAATGCGGTATGCTTAAGCTGTCCTTGTCAAGAGCGGCTTCCTG AGAACGCAAAGGAACAAGACGAGGTCGGATCGCCGGAGAGCATACGGCAG AGTGCAAATGCGGTATGCTTAA back to top
|