mRNA_H-paniculata_contig37371.9843.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig37371.9843.1
Unique NamemRNA_H-paniculata_contig37371.9843.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig37371.9843.1 vs. uniprot
Match: A0A6H5JQV0_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQV0_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 3.470e-31
Identity = 58/85 (68.24%), Postives = 68/85 (80.00%), Query Frame = 1
Query:   10 GTHQGWKDNSTWSRGQAWTIYAYVMVYRFLKKERFLSYSIGLLEYFEANVGSDNVPLADFDAPEDEFNPKDSSSTIIVGSALFEL 264
            GT+QGW+D+STWSRGQAW IY + MVYR+LK++RFL Y+I  L YF  N+  DNVP ADFDAP D  NPKDSS+T IV SALFEL
Sbjct:  161 GTYQGWQDDSTWSRGQAWAIYGFTMVYRYLKEQRFLDYAINTLSYFVDNLPDDNVPYADFDAPVDSDNPKDSSATAIVTSALFEL 245          
BLAST of mRNA_H-paniculata_contig37371.9843.1 vs. uniprot
Match: D7FUK3_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUK3_ECTSI)

HSP 1 Score: 114 bits (286), Expect = 2.250e-30
Identity = 54/85 (63.53%), Postives = 65/85 (76.47%), Query Frame = 1
Query:   10 GTHQGWKDNSTWSRGQAWTIYAYVMVYRFLKKERFLSYSIGLLEYFEANVGSDNVPLADFDAPEDEFNPKDSSSTIIVGSALFEL 264
            GT+QGW+D+STWSRGQAW IY + MV+R+L ++RFL Y+I  L YF  N+  DNVP ADFD P D  NP DSS+T IV SALFEL
Sbjct:    6 GTYQGWQDDSTWSRGQAWAIYGFTMVHRYLTEQRFLDYTINTLSYFIDNLPDDNVPYADFDDPVDSDNPNDSSATAIVTSALFEL 90          
BLAST of mRNA_H-paniculata_contig37371.9843.1 vs. uniprot
Match: D7FUJ9_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUJ9_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 3.270e-30
Identity = 57/85 (67.06%), Postives = 67/85 (78.82%), Query Frame = 1
Query:   10 GTHQGWKDNSTWSRGQAWTIYAYVMVYRFLKKERFLSYSIGLLEYFEANVGSDNVPLADFDAPEDEFNPKDSSSTIIVGSALFEL 264
            GT+QGW+D+STWSRGQAW IY ++MV+R+L+K RFL Y I  L YF  N+  DNVP ADFDAP D  NPKDSS+T IV SALFEL
Sbjct:  219 GTYQGWQDDSTWSRGQAWAIYGFIMVHRYLQKPRFLDYGINTLSYFVDNLPDDNVPYADFDAPVDSDNPKDSSATAIVTSALFEL 303          
BLAST of mRNA_H-paniculata_contig37371.9843.1 vs. uniprot
Match: D7FQV4_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQV4_ECTSI)

HSP 1 Score: 118 bits (296), Expect = 3.230e-29
Identity = 57/85 (67.06%), Postives = 67/85 (78.82%), Query Frame = 1
Query:   10 GTHQGWKDNSTWSRGQAWTIYAYVMVYRFLKKERFLSYSIGLLEYFEANVGSDNVPLADFDAPEDEFNPKDSSSTIIVGSALFEL 264
            GT+QGW+D+STWSRGQAW +Y + MV+R+LK ERFL  SI  L YF  N+  DNVP ADFDAPE+  NPKDSS+T IV SALFEL
Sbjct:  161 GTYQGWQDDSTWSRGQAWAVYGFAMVHRYLKDERFLDRSILTLGYFVDNLPDDNVPYADFDAPENSDNPKDSSATAIVASALFEL 245          
BLAST of mRNA_H-paniculata_contig37371.9843.1 vs. uniprot
Match: A0A6H5JQR3_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQR3_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.020e-29
Identity = 54/87 (62.07%), Postives = 66/87 (75.86%), Query Frame = 1
Query:    4 VAGTHQGWKDNSTWSRGQAWTIYAYVMVYRFLKKERFLSYSIGLLEYFEANVGSDNVPLADFDAPEDEFNPKDSSSTIIVGSALFEL 264
            + G +QGW+D+STWSRGQAW +Y + MV+R+LKK+RFL Y+I  L YF  ++  DNVP ADFDAP D  NPKDSS T IV SAL EL
Sbjct:  116 LGGAYQGWQDDSTWSRGQAWAMYGFTMVHRYLKKQRFLEYAINTLSYFIDSLPDDNVPYADFDAPVDSDNPKDSSVTAIVTSALLEL 202          
BLAST of mRNA_H-paniculata_contig37371.9843.1 vs. uniprot
Match: D8LHN8_ECTSI (Unsaturated glucuronyl hydrolase, family GH88 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHN8_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.170e-24
Identity = 52/86 (60.47%), Postives = 64/86 (74.42%), Query Frame = 1
Query:   10 GTHQGWKDNSTWSRGQAWTIYAYVMVYRFLKKERFLSYSIGLLEYFEANVGSDNVPLADFDAPEDEF-NPKDSSSTIIVGSALFEL 264
            GT+QG+ ++STW+RGQAW IY Y MVYRFL ++RFL  SIGLL+Y+E N+  D +P ADFDAPE    N KDSS+  IV S L EL
Sbjct:  248 GTYQGYTNSSTWTRGQAWAIYGYAMVYRFLPEQRFLDRSIGLLKYYEDNLPEDLIPPADFDAPESATDNGKDSSAAAIVSSGLLEL 333          
BLAST of mRNA_H-paniculata_contig37371.9843.1 vs. uniprot
Match: A0A6H5KCI0_9PHAE (GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCI0_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 2.890e-24
Identity = 53/86 (61.63%), Postives = 64/86 (74.42%), Query Frame = 1
Query:   10 GTHQGWKDNSTWSRGQAWTIYAYVMVYRFLKKERFLSYSIGLLEYFEANVGSDNVPLADFDAPEDEF-NPKDSSSTIIVGSALFEL 264
            GT+QG+ ++STW+RGQAW IY Y MVYRFL ++RFL  SIGLLEY+E N+  D +P ADFDAPE    N KDSS+  IV S L EL
Sbjct:  285 GTYQGYTNSSTWTRGQAWAIYGYAMVYRFLPEQRFLDRSIGLLEYYEDNLPEDLIPPADFDAPESATDNGKDSSAAAIVSSGLLEL 370          
BLAST of mRNA_H-paniculata_contig37371.9843.1 vs. uniprot
Match: UPI00200F5605 (glycoside hydrolase family 88 protein n=1 Tax=Agarivorans sp. TSD2052 TaxID=2937286 RepID=UPI00200F5605)

HSP 1 Score: 98.6 bits (244), Expect = 1.910e-22
Identity = 53/87 (60.92%), Postives = 61/87 (70.11%), Query Frame = 1
Query:   13 THQGWKDNSTWSRGQAWTIYAYVMVYRFLKKERFLSYSIGLLEYF-EANV--GSDNVPLADFDAPEDEFNPKDSSSTIIVGSALFEL 264
            THQGWK +STWSRGQAW++YAY M YR+   ER L  SI   EYF EA      D +P ADFDAP D+ NP+DSS+T IV SAL EL
Sbjct:  242 THQGWKADSTWSRGQAWSVYAYAMYYRYTGLERMLERSIKSYEYFIEATKLQTQDFIPYADFDAPIDDKNPRDSSATAIVASALLEL 328          
BLAST of mRNA_H-paniculata_contig37371.9843.1 vs. uniprot
Match: R9PSV9_AGAAL (Putative unsaturated glucuronyl hydrolase n=4 Tax=Agarivorans TaxID=261825 RepID=R9PSV9_AGAAL)

HSP 1 Score: 98.2 bits (243), Expect = 2.790e-22
Identity = 51/87 (58.62%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   13 THQGWKDNSTWSRGQAWTIYAYVMVYRFLKKERFLSYSIGLLEYFEANVGS---DNVPLADFDAPEDEFNPKDSSSTIIVGSALFEL 264
            THQGWK  STWSRGQAW++YAY M YR+   ER L  SI   EYF  +      D VP +DFDAP D+ NP+DSS+T IV SAL EL
Sbjct:  248 THQGWKTESTWSRGQAWSVYAYAMYYRYTGLERMLERSIKSYEYFIESTKQQTQDLVPYSDFDAPIDDDNPRDSSATAIVASALIEL 334          
BLAST of mRNA_H-paniculata_contig37371.9843.1 vs. uniprot
Match: UPI001F1B9B3F (glycoside hydrolase family 88 protein n=1 Tax=Vibrio hippocampi TaxID=654686 RepID=UPI001F1B9B3F)

HSP 1 Score: 93.6 bits (231), Expect = 1.380e-20
Identity = 48/87 (55.17%), Postives = 59/87 (67.82%), Query Frame = 1
Query:   13 THQGWKDNSTWSRGQAWTIYAYVMVYRFLKKERFLSYSIGLLEYFEANVG---SDNVPLADFDAPEDEFNPKDSSSTIIVGSALFEL 264
            THQGW+ +STWSRGQAW++YAY M YRF   ER L  SI   +YF +      +D VP +DFDAP D  NPKD+S+T +V S L EL
Sbjct:  247 THQGWQTDSTWSRGQAWSVYAYAMYYRFTGLERMLERSIKSYDYFLSATQQQTNDLVPYSDFDAPIDVRNPKDTSATAVVASGLLEL 333          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37371.9843.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JQV0_9PHAE3.470e-3168.24GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7FUK3_ECTSI2.250e-3063.53Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
D7FUJ9_ECTSI3.270e-3067.06Unsaturated glucuronyl hydrolase, family GH88 n=3 ... [more]
D7FQV4_ECTSI3.230e-2967.06Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
A0A6H5JQR3_9PHAE4.020e-2962.07GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LHN8_ECTSI2.170e-2460.47Unsaturated glucuronyl hydrolase, family GH88 n=1 ... [more]
A0A6H5KCI0_9PHAE2.890e-2461.63GH88 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
UPI00200F56051.910e-2260.92glycoside hydrolase family 88 protein n=1 Tax=Agar... [more]
R9PSV9_AGAAL2.790e-2258.62Putative unsaturated glucuronyl hydrolase n=4 Tax=... [more]
UPI001F1B9B3F1.380e-2055.17glycoside hydrolase family 88 protein n=1 Tax=Vibr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig37371contigH-paniculata_contig37371:530..1220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score122.1
Seed ortholog evalue1.3e-25
Seed eggNOG ortholog2880.D7FUK0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
Ec32 ortholog descriptionUnsaturated glucuronyl hydrolase, family GH88
Ec32 orthologEc-02_002930.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930150.6552753-CDS-H-paniculata_contig37371:529..6691622930150.6552753-CDS-H-paniculata_contig37371:529..669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37371 530..669 +
1691481167.7714834-CDS-H-paniculata_contig37371:529..6691691481167.7714834-CDS-H-paniculata_contig37371:529..669Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37371 530..669 +
1622930150.674054-CDS-H-paniculata_contig37371:1096..12201622930150.674054-CDS-H-paniculata_contig37371:1096..1220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37371 1097..1220 +
1691481167.783107-CDS-H-paniculata_contig37371:1096..12201691481167.783107-CDS-H-paniculata_contig37371:1096..1220Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig37371 1097..1220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig37371.9843.1prot_H-paniculata_contig37371.9843.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig37371 530..1220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig37371.9843.1

>prot_H-paniculata_contig37371.9843.1 ID=prot_H-paniculata_contig37371.9843.1|Name=mRNA_H-paniculata_contig37371.9843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=88bp
FVAGTHQGWKDNSTWSRGQAWTIYAYVMVYRFLKKERFLSYSIGLLEYFE
ANVGSDNVPLADFDAPEDEFNPKDSSSTIIVGSALFEL
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mRNA from alignment at H-paniculata_contig37371:530..1220+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig37371.9843.1 ID=mRNA_H-paniculata_contig37371.9843.1|Name=mRNA_H-paniculata_contig37371.9843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=691bp|location=Sequence derived from alignment at H-paniculata_contig37371:530..1220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGTTGCAGGGACGCACCAAGGGTGGAAGGACAATTCTACCTGGAGCCG GGGTCAGGCGTGGACGATCTACGCCTACGTGATGGTCTACCGATTCCTCA AGAAAGAGAGATTCTTGTCATACTCCATTGGACTCCTAGAGTGAGCGCAG TATAGACATTGTGACCCTGGTTTTTAGTTTTTAGTTTTTAGGGTTTTTTT CTCTAGGTACGTACTATTTTGGAGCTATTCGTGCGCCCGCTGTCCGTCTA GTGTTAATTGGTTTATTGCATTGTATACCTTTTATCCCCTTTTATCAAGT CATTATTTATCCTGTTTTAATATCTGTAATAAAAAAGGTATCCTTTATCC ACTTTTTTTAGAATGTTCCCTGCCCGCGTTTGTGTTTGCGTTTGCACTTT TTATTTTTTTTATTTTCTACCTTTATCTCCTTTTATCAAGTCATTATTTA TCCTGTTAATATCTGTAATAAAAAAGGTATTCTTTATCCAGTTTTTGTAG AATGTTCCCTGCCCGCGTTTGTGTTTGCGTTTGCACTTTTTGTTTTTTCC CTTTCCTCCTCGACAAGGTACTTCGAGGCTAACGTGGGCAGTGATAATGT TCCCTTGGCTGACTTCGATGCCCCGGAAGATGAATTCAACCCCAAGGACT CGTCCTCTACTATTATTGTCGGGTCGGCGCTCTTCGAGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig37371:530..1220+

>mRNA_H-paniculata_contig37371.9843.1 ID=mRNA_H-paniculata_contig37371.9843.1|Name=mRNA_H-paniculata_contig37371.9843.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at H-paniculata_contig37371:530..1220+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTGTTGCAGGGACGCACCAAGGGTGGAAGGACAATTCTACCTGGAGCCG
GGGTCAGGCGTGGACGATCTACGCCTACGTGATGGTCTACCGATTCCTCA
AGAAAGAGAGATTCTTGTCATACTCCATTGGACTCCTAGATTTGTTGCAG
GGACGCACCAAGGGTGGAAGGACAATTCTACCTGGAGCCGGGGTCAGGCG
TGGACGATCTACGCCTACGTGATGGTCTACCGATTCCTCAAGAAAGAGAG
ATTCTTGTCATACTCCATTGGACTCCTAGAGTACTTCGAGGCTAACGTGG
GCAGTGATAATGTTCCCTTGGCTGACTTCGATGCCCCGGAAGATGAATTC
AACCCCAAGGACTCGTCCTCTACTATTATTGTCGGGTCGGCGCTCTTCGA
GCTGGTACTTCGAGGCTAACGTGGGCAGTGATAATGTTCCCTTGGCTGAC
TTCGATGCCCCGGAAGATGAATTCAACCCCAAGGACTCGTCCTCTACTAT
TATTGTCGGGTCGGCGCTCTTCGAGCTG
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