mRNA_H-paniculata_contig37160.9801.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig37160.9801.1 vs. uniprot
Match: D7FJX2_ECTSI (Glutaminyl-tRNA Synthetase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJX2_ECTSI) HSP 1 Score: 129 bits (324), Expect = 8.230e-29 Identity = 73/108 (67.59%), Postives = 85/108 (78.70%), Query Frame = 1
Query: 1 DTTPGHLVLNRTVTLREAAGKSAMAPGKSRKEEQASFAARQAAEKEAKKHIKPQDMYLSQRSIYSSFDADGVPMTDGVGQPLSKSAIKKLKKEWEKQKKLYEKAVAEA 324
D+TP LVLNRTVTL+EA GKS + KSRKE QA RQAAEKEA+K + PQ+M+LS +YS+FD GVP TD G+PLSKSAIKKLKKEWEKQKKLYEK +AE+
Sbjct: 558 DSTPELLVLNRTVTLKEATGKSTVPKDKSRKEIQA----RQAAEKEARKRVPPQEMFLSMTDLYSAFDDQGVPTTDKSGEPLSKSAIKKLKKEWEKQKKLYEKTLAES 661
BLAST of mRNA_H-paniculata_contig37160.9801.1 vs. uniprot
Match: A0A6H5JZH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZH1_9PHAE) HSP 1 Score: 129 bits (323), Expect = 1.470e-28 Identity = 72/108 (66.67%), Postives = 85/108 (78.70%), Query Frame = 1
Query: 1 DTTPGHLVLNRTVTLREAAGKSAMAPGKSRKEEQASFAARQAAEKEAKKHIKPQDMYLSQRSIYSSFDADGVPMTDGVGQPLSKSAIKKLKKEWEKQKKLYEKAVAEA 324
D+TP LVLNRTVTL+EA GKS + KSRKE QA RQAAEKEA+K + PQ+M+LS +YS+FD GVP TD G+PLSKS+IKKLKKEWEKQKKLYEK +AE+
Sbjct: 678 DSTPELLVLNRTVTLKEATGKSTVPKDKSRKEIQA----RQAAEKEARKRVPPQEMFLSMTDLYSAFDDQGVPTTDKAGEPLSKSSIKKLKKEWEKQKKLYEKTLAES 781
BLAST of mRNA_H-paniculata_contig37160.9801.1 vs. uniprot
Match: A0A7S3HDJ2_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HDJ2_9STRA) HSP 1 Score: 94.4 bits (233), Expect = 2.410e-19 Identity = 53/106 (50.00%), Postives = 73/106 (68.87%), Query Frame = 1
Query: 1 DTTPGHLVLNRTVTLREAAGKSAMAPGKSRKEEQASFAARQAAEKEAKKHIKPQDMYLSQRSIYSSFDADGVPMTDGVGQPLSKSAIKKLKKEWEKQKKLYEKAVA 318
D+T LVLN TV L+++ K A P +SRKEEQA + A+K A+ I P++M+ SQ +YS+FDA+G+P D G+ +SKS KKL+K+WEKQKKL+E A A
Sbjct: 56 DSTDKKLVLNMTVNLKDSKPKEAGMPNRSRKEEQA----KALADKLARMSIAPEEMFKSQTDLYSAFDAEGIPTHDAAGEKISKSGYKKLRKDWEKQKKLFESASA 157
BLAST of mRNA_H-paniculata_contig37160.9801.1 vs. uniprot
Match: C5KVE2_PERM5 (Cysteinyl-tRNA synthetase, putative (Fragment) n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5KVE2_PERM5) HSP 1 Score: 90.9 bits (224), Expect = 1.000e-18 Identity = 57/107 (53.27%), Postives = 70/107 (65.42%), Query Frame = 1
Query: 1 DTTPGHLVLNRTVTLREAA-----GKSAMAPGKSRKEEQASFAARQAAEKEAKKHIKPQDMYLSQRSIYSSFDADGVPMTDGVGQPLSKSAIKKLKKEWEKQKKLYE 306
DTTP L+ N TVTL+E+ GK A +SRKE QA+ Q AEKEAKK I+P+DM+ Q YS FD G+P D G+ L+KSA KKL KEWEKQ++LYE
Sbjct: 1 DTTPNQLICNLTVTLKESGLKKTEGKHA---DRSRKEAQAA----QLAEKEAKKKIRPEDMFKGQTDKYSKFDEHGIPTHDAGGEKLTKSAYKKLHKEWEKQRRLYE 100
BLAST of mRNA_H-paniculata_contig37160.9801.1 vs. uniprot
Match: A0A7S3U5L5_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3U5L5_9SPIT) HSP 1 Score: 88.6 bits (218), Expect = 2.710e-17 Identity = 53/101 (52.48%), Postives = 68/101 (67.33%), Query Frame = 1
Query: 13 GHLVLNRTVTLREAAGK---SAMAPGKSRKEEQASFAARQAAEKEAKKHIKPQDMYLSQRSIYSSFDADGVPMTDGVGQPLSKSAIKKLKKEWEKQKKLYE 306
G NR + L+E+ K S A G+SRK+EQA +Q AEKE+KK + P+ M+LSQ +YS FD DGVP G+PL KS IKKLK+EW+KQKK+YE
Sbjct: 56 GKPTFNRIIGLKESGLKKEESKEAAGRSRKDEQA----KQLAEKESKKKLDPKKMFLSQTDLYSKFDEDGVPTNAADGEPLPKSRIKKLKQEWDKQKKVYE 152
BLAST of mRNA_H-paniculata_contig37160.9801.1 vs. uniprot
Match: A0A7J6SG79_PEROL (Glutamine--tRNA ligase n=9 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6SG79_PEROL) HSP 1 Score: 94.4 bits (233), Expect = 5.230e-17 Identity = 58/106 (54.72%), Postives = 71/106 (66.98%), Query Frame = 1
Query: 1 DTTPGHLVLNRTVTLREAA-----GKSAMAPGKSRKEEQASFAARQAAEKEAKKHIKPQDMYLSQRSIYSSFDADGVPMTDGVGQPLSKSAIKKLKKEWEKQKKLY 303
D+TPG L N TVTL+E+ GK A G+SRKE QA+ Q AEKEAKK I+PQDM+ Q YS FD +G+P D G+ L+KSA KKL KEWEKQ++LY
Sbjct: 558 DSTPGDLACNLTVTLKESGLKKTEGKHA---GRSRKEAQAA----QLAEKEAKKKIRPQDMFKDQTDKYSHFDENGIPTHDAAGEKLTKSAFKKLHKEWEKQRRLY 656
BLAST of mRNA_H-paniculata_contig37160.9801.1 vs. uniprot
Match: W7TED8_9STRA (Glutamine-trna ligase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TED8_9STRA) HSP 1 Score: 94.0 bits (232), Expect = 5.870e-17 Identity = 57/107 (53.27%), Postives = 74/107 (69.16%), Query Frame = 1
Query: 1 DTTPGHLVLNRTVTLREAAGKS-----AMAPGKSRKEEQASFAARQAAEKEAKKHIKPQDMYLSQRSIYSSFDADGVPMTDGVGQPLSKSAIKKLKKEWEKQKKLYE 306
DTT LVLNR VTL+E++ K A G+SRKEEQA RQ EKEA+K++ P+DM+ ++ YS+FD DG+P D G LSKS +KKLKKEWEKQK+L++
Sbjct: 555 DTTSAKLVLNRVVTLKESSVKKDVSTGADGKGRSRKEEQA----RQLLEKEARKNLDPKDMFQAETDKYSAFDEDGIPTKDVEGILLSKSLVKKLKKEWEKQKRLFD 657
BLAST of mRNA_H-paniculata_contig37160.9801.1 vs. uniprot
Match: A0A7J6P5T0_PEROL (Elongation factor Ts, mitochondrial n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6P5T0_PEROL) HSP 1 Score: 89.7 bits (221), Expect = 1.890e-15 Identity = 57/106 (53.77%), Postives = 69/106 (65.09%), Query Frame = 1
Query: 1 DTTPGHLVLNRTVTLREAA-----GKSAMAPGKSRKEEQASFAARQAAEKEAKKHIKPQDMYLSQRSIYSSFDADGVPMTDGVGQPLSKSAIKKLKKEWEKQKKLY 303
D+T G L N TVTL+E+ GK A G+SRKE QA+ Q AEKEAKK I+PQDM+ Q YS FD +G+P D G L+KSA KKL KEWEKQ++LY
Sbjct: 489 DSTLGDLACNLTVTLKESGLKKTEGKHA---GRSRKEAQAA----QLAEKEAKKKIRPQDMFKDQSDKYSQFDENGIPTHDAAGAKLTKSAFKKLHKEWEKQRRLY 587
BLAST of mRNA_H-paniculata_contig37160.9801.1 vs. uniprot
Match: C5KE56_PERM5 (Glutamine--tRNA ligase n=5 Tax=Perkinsus TaxID=28000 RepID=C5KE56_PERM5) HSP 1 Score: 89.0 bits (219), Expect = 2.540e-15 Identity = 56/107 (52.34%), Postives = 69/107 (64.49%), Query Frame = 1
Query: 1 DTTPGHLVLNRTVTLREAA-----GKSAMAPGKSRKEEQASFAARQAAEKEAKKHIKPQDMYLSQRSIYSSFDADGVPMTDGVGQPLSKSAIKKLKKEWEKQKKLYE 306
D+T L N TVTL+E+ GK A G+SRKE QA+ Q AEKEAKK I+P+DM+ Q YS FD G+P D G+ L+KSA KKL KEWEKQ++LYE
Sbjct: 557 DSTADQLTCNLTVTLKESGLKKTEGKHA---GRSRKEAQAA----QLAEKEAKKKIRPEDMFKEQTDKYSQFDESGIPTHDAAGEKLAKSAYKKLHKEWEKQRRLYE 656
BLAST of mRNA_H-paniculata_contig37160.9801.1 vs. uniprot
Match: A0A7S2USR8_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USR8_9STRA) HSP 1 Score: 84.7 bits (208), Expect = 3.700e-15 Identity = 53/103 (51.46%), Postives = 71/103 (68.93%), Query Frame = 1
Query: 19 LVLNRTVTLREAAGKS-AMAPGKSRKEEQASFAARQAAEKEAKKHIKPQDMYLSQRSIYSSFDADGVPMTDGVGQPLSKSAIKKLKKEWEKQKKLYEKAVAEA 324
LV NRTVTLRE+ K + SRKE+QA+ Q A K A+++I P+D + SQ YS+FDA+G+P D G+PLSKS IKKLKKE +KQ+KL+ K ++A
Sbjct: 135 LVFNRTVTLRESGPKKESSGDNSSRKEQQAA----QLAAKAARENIAPEDFFKSQTDKYSAFDAEGLPTHDKDGEPLSKSMIKKLKKEQDKQRKLFNKKKSKA 233 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig37160.9801.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig37160.9801.1 >prot_H-paniculata_contig37160.9801.1 ID=prot_H-paniculata_contig37160.9801.1|Name=mRNA_H-paniculata_contig37160.9801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp MAPGKSRKEEQASFAARQAAEKEAKKHIKPQDMYLSQRSIYSSFDADGVPback to top mRNA from alignment at H-paniculata_contig37160:267..1770- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig37160.9801.1 ID=mRNA_H-paniculata_contig37160.9801.1|Name=mRNA_H-paniculata_contig37160.9801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1504bp|location=Sequence derived from alignment at H-paniculata_contig37160:267..1770- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig37160:267..1770- >mRNA_H-paniculata_contig37160.9801.1 ID=mRNA_H-paniculata_contig37160.9801.1|Name=mRNA_H-paniculata_contig37160.9801.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig37160:267..1770- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |