mRNA_H-paniculata_contig3707.9779.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3707.9779.1
Unique NamemRNA_H-paniculata_contig3707.9779.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3707.9779.1 vs. uniprot
Match: A0A6H5KTL5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTL5_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.290e-28
Identity = 61/75 (81.33%), Postives = 65/75 (86.67%), Query Frame = 1 
Query:   25 AHDEYSGELDAREVANGFGMGMSSKSLKRAKSDGSNPKDVDPAEARARMDRAFTMPQFVTSVKGFGGSGRAKQVR 249
            A DEYSGELDA EVANGFGMGMSSK+LKRAKSDG+ P DV  AEARARMDRAFTMPQFVTS  G+ GS RAK+VR
Sbjct: 1777 ARDEYSGELDANEVANGFGMGMSSKNLKRAKSDGTEPTDVTNAEARARMDRAFTMPQFVTSSAGYAGSARAKKVR 1851
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BLAST of mRNA_H-paniculata_contig3707.9779.1 vs. uniprot
Match: D8LK00_ECTSI (DEK C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK00_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 2.870e-27
Identity = 60/75 (80.00%), Postives = 64/75 (85.33%), Query Frame = 1 
Query:   25 AHDEYSGELDAREVANGFGMGMSSKSLKRAKSDGSNPKDVDPAEARARMDRAFTMPQFVTSVKGFGGSGRAKQVR 249
            A DEYSGELDA EVANGFGMGMSSK LKRAKSDG+ P DV  AEARARMDRAFTMPQFVTS  G+ GS RAK+V+
Sbjct: 1712 ARDEYSGELDANEVANGFGMGMSSKLLKRAKSDGTEPTDVTNAEARARMDRAFTMPQFVTSSAGYAGSARAKKVQ 1786
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3707.9779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KTL5_9PHAE3.290e-2881.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LK00_ECTSI2.870e-2780.00DEK C-terminal domain-containing protein n=1 Tax=E... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3707contigH-paniculata_contig3707:555..2166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue1e-13
Seed eggNOG ortholog2880.D8LK00
Hectar predicted targeting categoryother localisation
EggNOG OGs28NH7@1,2QV2P@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size447
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3707.9779.1prot_H-paniculata_contig3707.9779.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3707 636..2106 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930142.9181738-UTR-H-paniculata_contig3707:554..6351622930142.9181738-UTR-H-paniculata_contig3707:554..635Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3707 555..635 +
1691481164.3203561-UTR-H-paniculata_contig3707:554..6351691481164.3203561-UTR-H-paniculata_contig3707:554..635Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3707 555..635 +
1622930142.9928205-UTR-H-paniculata_contig3707:2106..21661622930142.9928205-UTR-H-paniculata_contig3707:2106..2166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3707 2107..2166 +
1691481164.3666818-UTR-H-paniculata_contig3707:2106..21661691481164.3666818-UTR-H-paniculata_contig3707:2106..2166Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3707 2107..2166 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930142.9405608-CDS-H-paniculata_contig3707:635..6531622930142.9405608-CDS-H-paniculata_contig3707:635..653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3707 636..653 +
1691481164.3328342-CDS-H-paniculata_contig3707:635..6531691481164.3328342-CDS-H-paniculata_contig3707:635..653Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3707 636..653 +
1622930142.9616685-CDS-H-paniculata_contig3707:1279..14421622930142.9616685-CDS-H-paniculata_contig3707:1279..1442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3707 1280..1442 +
1691481164.3485103-CDS-H-paniculata_contig3707:1279..14421691481164.3485103-CDS-H-paniculata_contig3707:1279..1442Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3707 1280..1442 +
1622930142.9775746-CDS-H-paniculata_contig3707:1981..21061622930142.9775746-CDS-H-paniculata_contig3707:1981..2106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3707 1982..2106 +
1691481164.35858-CDS-H-paniculata_contig3707:1981..21061691481164.35858-CDS-H-paniculata_contig3707:1981..2106Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3707 1982..2106 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3707.9779.1

>prot_H-paniculata_contig3707.9779.1 ID=prot_H-paniculata_contig3707.9779.1|Name=mRNA_H-paniculata_contig3707.9779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
MGMSSKSLKRAKSDGSNPKDVDPAEARARMDRAFTMPQFVTSVKGFGGSG
RAKQVRLSILRSAQGLIPIAHGELAGPIGLSRLRQNHRLGLEVRVYVVFQ
Q*
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mRNA from alignment at H-paniculata_contig3707:555..2166+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3707.9779.1 ID=mRNA_H-paniculata_contig3707.9779.1|Name=mRNA_H-paniculata_contig3707.9779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1612bp|location=Sequence derived from alignment at H-paniculata_contig3707:555..2166+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGCGGGCAAGAAGCGACGCGGGGCCCACGATGAGTACTCGGGAGAGCT
CGACGCGCGGGAAGTGGCGAACGGCTTCGGGATGGGCATGTCTTCCAAGG
TAACTTTATTGAAGCGATGAAGCGACGGTATTTTTGAGAGGGCCTTGGTC
GGTTGCGAGGGGTGGCTGAGTCACATTCTGCGGGGGTTAAAAAAAACAAG
GCCGGCCATGCTGTTGAGTTATATGGAAAAAGATTCATAAAAATCCTTTT
TTTTGGTATCTTGCTTCTTTTCCCCTCGAGCTTTGCTGGTGAAAATTAAT
CTACCTGATGATTCGCATTCTATAGCGGGGACGACGCAGCCTAATGGTTC
ACGTACTACTGTAGGCGGAGTACAACTATCCCCTCTAACATTTCGTCCTC
TATTTTGTATTGTTTTGTTAAACCCCTTTCGTGGCTAGGTAGACAGCCGC
TTACCAAATATTTCGATCTTAAATAGGTTCCGGTTGCACGTGTATATTAT
AAGGAAGTTGTACAATTTTAGGGTACGCGGCGACGTGATCGTAACCTGGC
GCTCCGCGCGCACGTTAGATCAATTGTACGTACCAACGAGAGAAAGAAAG
AAAAAATATTCGGGAAACAGAAAATATAGCAACCCTCTTGAACAACGATG
AGATGCATGTTTTTTGCTTGGCTTTACTTTGCTTTCCTGATGATTTCTTC
TGCCCTTCCTCGTTATTCAACGCAGAGTTTGAAAAGAGCTAAGAGCGACG
GGTCAAACCCGAAAGACGTGGATCCGGCCGAGGCCCGAGCCCGCATGGAT
CGCGCCTTCACAATGCCCCAGTTTGTCACATCTGTTAAGGGTTTCGGAGG
TTCTGGTCGCGCCAAGCAGGTGCGTCTGTCTATTCTTCGTTGATGTCAAC
ATCCTGCTATGCTGTAGATATCAGGGCACAATGGTTACTCGTGGTTGATC
TGTTTTTTGGGGCGTGTGCTCTTTTCATTTCATTTGTTCGCCTCTCCCAA
GTTTCCTCTGGTGGCTTCAGAGTAAATATCTGGTCAAAAGAATAAATACA
TATAGAATAACCAACCTTTTGTGATACGATTTTTGACAGTTCAGGATTTT
TATTTTTTTAGTTTGCACAGTAAGAGGTGCTCGTAAACATTGATTGGACC
CAAGACAGCCACGACTTCAGGTGGTGGTTATTTATGCGTCTGGGCCCTTT
CTCTGCCCAAAACCCACCCCGTGTTTGGCAGATCGATGACACAAATACAC
CACCCATCAAATCTACAACTCAGACTTACGGGCGCACATGCTCAACCCAT
GGCACGAACGACCCCGTGCATCTTTCTCTCTACAGTTCACGTTGACCTCC
CTCCTCTTCCATCATGCCTGCGTTCATGTTTTTGCTCTCTGTCTGTATGC
CACAACTGATTTTACACGACCACGCAGGCTCAGCGCAAGGGCTCATTCCT
ATCGCGCACGGGGAGCTTGCAGGCCCGATCGGGCTCTCTCGCCTCCGGCA
AAACCACCGTCTCGGCCTCGAAGTTCGTGTTTATGTCGTCTTCCAGCAGT
AGCAGCCATAGCAACATGGGAGGGGAGGAGAGTGCCACTCGCACAGGCTT
CGAAGATTCCGT
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Coding sequence (CDS) from alignment at H-paniculata_contig3707:555..2166+

>mRNA_H-paniculata_contig3707.9779.1 ID=mRNA_H-paniculata_contig3707.9779.1|Name=mRNA_H-paniculata_contig3707.9779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig3707:555..2166+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGCATGTCTTCCAAGATGGGCATGTCTTCCAAGAGTTTGAAAAGAGC
TAAGAGCGACGGGTCAAACCCGAAAGACGTGGATCCGGCCGAGGCCCGAG
CCCGCATGGATCGCGCCTTCACAATGCCCCAGTTTGTCACATCTGTTAAG
GGTTTCGGAGGTTCTGGTCGCGCCAAGCAGGTGCGTCTGTCTATTCTTCA
GTTTGAAAAGAGCTAAGAGCGACGGGTCAAACCCGAAAGACGTGGATCCG
GCCGAGGCCCGAGCCCGCATGGATCGCGCCTTCACAATGCCCCAGTTTGT
CACATCTGTTAAGGGTTTCGGAGGTTCTGGTCGCGCCAAGCAGGTGCGTC
TGTCTATTCTTCGCTCAGCGCAAGGGCTCATTCCTATCGCGCACGGGGAG
CTTGCAGGCCCGATCGGGCTCTCTCGCCTCCGGCAAAACCACCGTCTCGG
CCTCGAAGTTCGTGTTTATGTCGTCTTCCAGCAGTAGGCTCAGCGCAAGG
GCTCATTCCTATCGCGCACGGGGAGCTTGCAGGCCCGATCGGGCTCTCTC
GCCTCCGGCAAAACCACCGTCTCGGCCTCGAAGTTCGTGTTTATGTCGTC
TTCCAGCAGTAG
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