mRNA_H-paniculata_contig36987.9760.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig36987.9760.1
Unique NamemRNA_H-paniculata_contig36987.9760.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig36987.9760.1 vs. uniprot
Match: A0A6H5J951_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J951_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 8.240e-36
Identity = 72/93 (77.42%), Postives = 84/93 (90.32%), Query Frame = 1
Query:    1 RAPKMSSVPYDEDGVAGGAAAAREEKRLARRRERLGRGEVMETVREEFGDQPEAVRAVGNAGRSGVSEAKMKRLLDEDKERLDFEEDHMVRLV 279
            RAP+++S+PYDEDG++ G  AAR EKRL RRR++L RGEVMET+REEFG+QPE VRAVGNAG SGVSEAKMK+LL+EDKERLDFEEDHMVRL 
Sbjct:  300 RAPRLASMPYDEDGLSTG--AARGEKRLERRRDKLRRGEVMETLREEFGEQPETVRAVGNAGASGVSEAKMKKLLEEDKERLDFEEDHMVRLT 390          
BLAST of mRNA_H-paniculata_contig36987.9760.1 vs. uniprot
Match: A0A835ZC79_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC79_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.600e-12
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    1 RAPKMSSVPYDEDGVAGGAAAAREEKRLARRRERLGRGEVMETVREEFGDQPEAVRAVGNAG 186
            RAP+M++VPY+EDG AG     R+E+R+ RRR+R   GE++ET+REEFGD+PE VR  G +G
Sbjct:  226 RAPRMAAVPYEEDGAAG--TRRRDERRVERRRDRARTGEILETLREEFGDRPEVVRGGGGSG 285          
BLAST of mRNA_H-paniculata_contig36987.9760.1 vs. uniprot
Match: A0A835YU38_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU38_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 3.970e-12
Identity = 35/62 (56.45%), Postives = 48/62 (77.42%), Query Frame = 1
Query:    1 RAPKMSSVPYDEDGVAGGAAAAREEKRLARRRERLGRGEVMETVREEFGDQPEAVRAVGNAG 186
            RAP+M++VPY+EDG AG     R+E+R+ RRR+R   GE++ET+REEFGD+PE VR  G +G
Sbjct:  226 RAPRMAAVPYEEDGAAG--TRRRDERRVERRRDRARTGEILETLREEFGDRPEVVRGGGGSG 285          
BLAST of mRNA_H-paniculata_contig36987.9760.1 vs. uniprot
Match: A0A836CGQ1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGQ1_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 4.270e-10
Identity = 34/66 (51.52%), Postives = 49/66 (74.24%), Query Frame = 1
Query:   79 RLARRRERLGRGEVMETVREEFGDQPEAVRAVGNAGRSGVSEAKMKRLLDEDKERLDFEEDHMVRL 276
            R+ RRR+R   GE++ET+REEFGD+PE VR  G +G   V++   ++L  E++ER +FEEDHM+RL
Sbjct:  239 RVERRRDRARTGEILETLREEFGDRPEVVRGGGGSGM--VNDQARRKLDREERERREFEEDHMIRL 302          
BLAST of mRNA_H-paniculata_contig36987.9760.1 vs. uniprot
Match: A0A067CYY5_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CYY5_SAPPC)

HSP 1 Score: 55.8 bits (133), Expect = 5.200e-7
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 1
Query:    1 RAPKMSSVPYDEDGVAGGAAAAREEKRLARRRERLGRGEVMETVREEFGDQPEAVRAVGNAGRSGVSEAKMKRLLDEDKERLDFEEDHMVRLV 279
            RAP+M+SVPYDE+       A R+E    R R+RL +  ++  VREE+ ++P+ +   G       S A  K L +E +E+ D+EE+  VRLV
Sbjct:  153 RAPRMASVPYDEEEKEADKKAKRDE----RNRKRLAKSTILSEVREEYSERPQEILTSG-------SSALDKELANEAREKTDYEEERFVRLV 234          
BLAST of mRNA_H-paniculata_contig36987.9760.1 vs. uniprot
Match: A0A5D6XJV1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XJV1_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 2.690e-6
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 1
Query:    1 RAPKMSSVPYDEDGVAGGAAAAREEKRLARRRERLGRGEVMETVREEFGDQPEAVRAVGNAGRSGVSEAKMKRLLDEDKERLDFEEDHMVRLV 279
            RAP+++SVPYDE+       AA++ KR  R R+R+ +  ++  +REEF ++P  + A       G S A  K L  E+ E+ D+EE   VRLV
Sbjct:  153 RAPRLASVPYDEEEKE----AAKKAKREERNRKRMQKSTILSELREEFSERPTEIFA-------GGSSAVDKELAREEAEKKDYEESRFVRLV 234          
BLAST of mRNA_H-paniculata_contig36987.9760.1 vs. uniprot
Match: A0A1V9YZY8_9STRA (Neuroguidin (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YZY8_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 3.040e-5
Identity = 33/93 (35.48%), Postives = 53/93 (56.99%), Query Frame = 1
Query:    1 RAPKMSSVPYDEDGVAGGAAAAREEKRLARRRERLGRGEVMETVREEFGDQPEAVRAVGNAGRSGVSEAKMKRLLDEDKERLDFEEDHMVRLV 279
            +AP+M+SVPY+E+       A R+E    R R+RL +  V+  VREE+ ++P+ +   G +       A  K +  E +E+ D+EE+  VRLV
Sbjct:  153 KAPRMASVPYEEEEREADKKAKRDE----RNRKRLAKSTVLSEVREEYSERPQEILTSGTS-------ALDKEIAKEAREKTDYEEERFVRLV 234          
BLAST of mRNA_H-paniculata_contig36987.9760.1 vs. uniprot
Match: A0A7S1U8G9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8G9_9STRA)

HSP 1 Score: 50.1 bits (118), Expect = 3.080e-5
Identity = 36/91 (39.56%), Postives = 54/91 (59.34%), Query Frame = 1
Query:    4 APKMSSVPYDEDGVAGGAAAAREEKRLARRRERLGRGEVMETVREEFGDQPEAVRAVGNAG-RSGVSEAKMKRLLDEDKERLDFEEDHMVR 273
            APK+ S+P++E   A   AA    K + + R RL + E+M ++REE G+ PE V A   AG + GV+ +K   +  ED ER D+EE+  +R
Sbjct:    6 APKLRSMPFEEMDSAERKAA----KAMEKARRRLNQSEMMASLREELGEDPEMVDANLLAGSQGGVTSSKALAMRREDLERQDWEENRFIR 92          
BLAST of mRNA_H-paniculata_contig36987.9760.1 vs. uniprot
Match: A0A485KMM8_9STRA (Aste57867_9210 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KMM8_9STRA)

HSP 1 Score: 50.4 bits (119), Expect = 4.170e-5
Identity = 31/93 (33.33%), Postives = 55/93 (59.14%), Query Frame = 1
Query:    1 RAPKMSSVPYDEDGVAGGAAAAREEKRLARRRERLGRGEVMETVREEFGDQPEAVRAVGNAGRSGVSEAKMKRLLDEDKERLDFEEDHMVRLV 279
            +AP+++SVPYDE+  +    A ++ KR  R R+R+ +  ++  +REE+ ++PE V   G A    +     K L  E++++ D+EE   VR+V
Sbjct:  151 KAPRLASVPYDEEEKS----AEKQAKRDERNRKRMAKSTILSEIREEYSERPEEVYTSGKA----ID----KELQREERDKTDYEESRFVRVV 231          
BLAST of mRNA_H-paniculata_contig36987.9760.1 vs. uniprot
Match: A0A6G0X1C2_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X1C2_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 7.840e-5
Identity = 30/93 (32.26%), Postives = 58/93 (62.37%), Query Frame = 1
Query:    1 RAPKMSSVPYDEDGVAGGAAAAREEKRLARRRERLGRGEVMETVREEFGDQPEAVRAVGNAGRSGVSEAKMKRLLDEDKERLDFEEDHMVRLV 279
            +AP+++SVPY+E+  A    A ++ KR  R R+R+ +  ++  +R+E+ ++PE ++    +GR+   E      L E++E++D+EE   VR+V
Sbjct:  157 KAPRLASVPYEEEEKA----AEKQAKRDERNRKRMAKSTILSEIRDEYSERPEELQT---SGRTIDKET-----LREEREKVDYEESRFVRVV 237          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig36987.9760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
A0A6H5J951_9PHAE8.240e-3677.42Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZC79_9STRA3.600e-1256.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YU38_9STRA3.970e-1256.45Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CGQ1_9STRA4.270e-1051.52Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A067CYY5_SAPPC5.200e-738.71Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A5D6XJV1_9STRA2.690e-638.71Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1V9YZY8_9STRA3.040e-535.48Neuroguidin (Fragment) n=1 Tax=Thraustotheca clava... [more]
A0A7S1U8G9_9STRA3.080e-539.56Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A485KMM8_9STRA4.170e-533.33Aste57867_9210 protein n=1 Tax=Aphanomyces stellat... [more]
A0A6G0X1C2_9STRA7.840e-532.26Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig36987contigH-paniculata_contig36987:1295..1941 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score133.3
Seed ortholog evalue5.9e-29
Seed eggNOG ortholog2880.D7FH58
Preferred nameNGDN
KEGG koko:K08873,ko:K14765,ko:K14767
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0000447,GO:0000460,GO:0000462,GO:0000466,GO:0000469,GO:0000478,GO:0000479,GO:0000480,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0005732,GO:0005737,GO:0005739,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030532,GO:0030684,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0097159,GO:0120114,GO:1901360,GO:1901363,GO:1990904
EggNOG free text desc.maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
EggNOG OGsKOG3117@1,KOG3117@2759
Ec32 ortholog descriptionSas10/Utp3/C1D
Ec32 orthologEc-13_000850.1
EC2.7.11.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko03009,ko03019
Exons2
Model size285
Cds size273
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig36987.9760.1prot_H-paniculata_contig36987.9760.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig36987 1307..1941 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930139.3884888-UTR-H-paniculata_contig36987:1294..13061622930139.3884888-UTR-H-paniculata_contig36987:1294..1306Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig36987 1295..1306 +
1691481162.5050054-UTR-H-paniculata_contig36987:1294..13061691481162.5050054-UTR-H-paniculata_contig36987:1294..1306Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig36987 1295..1306 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930139.405097-CDS-H-paniculata_contig36987:1306..14611622930139.405097-CDS-H-paniculata_contig36987:1306..1461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig36987 1307..1461 +
1691481162.5166106-CDS-H-paniculata_contig36987:1306..14611691481162.5166106-CDS-H-paniculata_contig36987:1306..1461Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig36987 1307..1461 +
1622930139.4225354-CDS-H-paniculata_contig36987:1823..19411622930139.4225354-CDS-H-paniculata_contig36987:1823..1941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig36987 1824..1941 +
1691481162.5279703-CDS-H-paniculata_contig36987:1823..19411691481162.5279703-CDS-H-paniculata_contig36987:1823..1941Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig36987 1824..1941 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig36987.9760.1

>prot_H-paniculata_contig36987.9760.1 ID=prot_H-paniculata_contig36987.9760.1|Name=mRNA_H-paniculata_contig36987.9760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=91bp
MSSVPYDEDGVAGGAAAAREEKRLARRRERLGRGEVMETVREEFGDQPEA
VRAVGNAGRSGVSEAKMKRLLDEDKERLDFEEDHMVRLVR*
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mRNA from alignment at H-paniculata_contig36987:1295..1941+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig36987.9760.1 ID=mRNA_H-paniculata_contig36987.9760.1|Name=mRNA_H-paniculata_contig36987.9760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=647bp|location=Sequence derived from alignment at H-paniculata_contig36987:1295..1941+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGCGCCGAAAATGTCGTCAGTCCCTTACGACGAAGACGGAGTCGCGGG AGGAGCTGCAGCAGCGAGAGAGGAAAAGCGTCTTGCCAGGCGCCGAGAGA GACTGGGTCGGGGCGAGGTGATGGAGACGGTTCGGGAGGAGTTCGGCGAC CAGCCGGAGGCTGTAAGGTGTGTTCTGTAGTTTGTCAATACTCGCTTGTT GCTTGTTTGGTATTCATTTAATTCGTTGATATATACGTTTTGTTTTTGTT ATTTGATATTGTTATTTGACATTGTTTTGAGGCAGTTCGGGAGGCTGTGA GGGTGTTTTGCTTCGTTTTTGTGCAATTAAGTGTGGTTACTCGTTTAGGT ATATATTTAATTATATTAGGGAGGTTATTTCGTGCATGAGCTAAGACAAG CATGACAACGAAAGTTGACAGTTTTTACCGAGACTAGCATTTGTGAAGTA TCTTGATAGTGCTTAGTGTGAGTGAAATAGAAGATCAATGACTTAATTTT TGTTGTGTCGGACGTACGTGTGGATTCAGGGCTGTGGGGAACGCGGGACG TTCGGGCGTGTCAGAGGCGAAAATGAAACGGCTCTTGGACGAAGACAAAG AGCGACTGGACTTCGAAGAGGACCACATGGTTCGATTGGTGAGATGA
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Coding sequence (CDS) from alignment at H-paniculata_contig36987:1295..1941+

>mRNA_H-paniculata_contig36987.9760.1 ID=mRNA_H-paniculata_contig36987.9760.1|Name=mRNA_H-paniculata_contig36987.9760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=546bp|location=Sequence derived from alignment at H-paniculata_contig36987:1295..1941+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGTCAGTCCCTTACGACGAAGACGGAGTCGCGGGAGGAGCTGCAGC
AGCGAGAGAGGAAAAGCGTCTTGCCAGGCGCCGAGAGAGACTGGGTCGGG
GCGAGGTGATGGAGACGGTTCGGGAGGAGTTCGGCGACCAGCCGGAGGCT
GTAAGATGTCGTCAGTCCCTTACGACGAAGACGGAGTCGCGGGAGGAGCT
GCAGCAGCGAGAGAGGAAAAGCGTCTTGCCAGGCGCCGAGAGAGACTGGG
TCGGGGCGAGGTGATGGAGACGGTTCGGGAGGAGTTCGGCGACCAGCCGG
AGGCTGTAAGGGCTGTGGGGAACGCGGGACGTTCGGGCGTGTCAGAGGCG
AAAATGAAACGGCTCTTGGACGAAGACAAAGAGCGACTGGACTTCGAAGA
GGACCACATGGTTCGATTGGTGAGATGAGGCTGTGGGGAACGCGGGACGT
TCGGGCGTGTCAGAGGCGAAAATGAAACGGCTCTTGGACGAAGACAAAGA
GCGACTGGACTTCGAAGAGGACCACATGGTTCGATTGGTGAGATGA
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