mRNA_H-paniculata_contig33146.8895.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33146.8895.1
Unique NamemRNA_H-paniculata_contig33146.8895.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig33146.8895.1 vs. uniprot
Match: A0A6H5L3T3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3T3_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 7.290e-14
Identity = 75/209 (35.89%), Postives = 90/209 (43.06%), Query Frame = 1 
Query:   10 RALLESLRRHVQRGQHSAPTFTAFQLIEQLFRCVESLETETRLLLIR-----PTSAPAAL-QRHEGRGGDGXXXXXXXARPSKKGGDGXXXXXXXXXXXXXXXXXXXXXXXXTESGR-------------------------RPTDSPSSSPQ-------------ITFPNESAYRLALTKLTAQLKAARERLRAEKVAVRSTGERAAQ 504
            RALLESLRRHVQRG HSAP+FTAFQLIEQ+F C+++LE++ +L   R     P++A + L      R G         A  +   G                            +GR                            D  S S +               F  E AYRLA+TKLTAQLKAARERL  EK A RS GER  Q
Sbjct:  176 RALLESLRRHVQRGHHSAPSFTAFQLIEQIFGCLKTLESDAQLSPARRRQRSPSAACSPLTDPSPPRRGGSPKRSPHAAVAAAAAGPRVTVKGLTPTPSSVSDRLDDEEDPDLRTGRGTNLPAAIGIGXXXXXXXXXXXXXXXXVDGSSGSQEEFQTQEGGGGRTTARFSTEWAYRLAVTKLTAQLKAARERLHGEKEAARSAGERVEQ 384
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BLAST of mRNA_H-paniculata_contig33146.8895.1 vs. uniprot
Match: D7FN22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN22_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 6.420e-11
Identity = 33/43 (76.74%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:   10 RALLESLRRHVQRGQHSAPTFTAFQLIEQLFRCVESLETETRL 138
            RALLESLRRHVQRG HSAP+FTAFQLIEQ+F C+E+LE++ +L
Sbjct:  202 RALLESLRRHVQRGLHSAPSFTAFQLIEQIFGCLETLESDAQL 244
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33146.8895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L3T3_9PHAE7.290e-1435.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN22_ECTSI6.420e-1176.74Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33146contigH-paniculata_contig33146:104..2354 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_001250.1
Exons2
Model size504
Cds size504
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930025.5453968-CDS-H-paniculata_contig33146:103..2791622930025.5453968-CDS-H-paniculata_contig33146:103..279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33146 104..279 -
1691481115.5227206-CDS-H-paniculata_contig33146:103..2791691481115.5227206-CDS-H-paniculata_contig33146:103..279Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33146 104..279 -
1622930025.5659986-CDS-H-paniculata_contig33146:2026..23541622930025.5659986-CDS-H-paniculata_contig33146:2026..2354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33146 2027..2354 -
1691481115.5333848-CDS-H-paniculata_contig33146:2026..23541691481115.5333848-CDS-H-paniculata_contig33146:2026..2354Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33146 2027..2354 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33146.8895.1prot_H-paniculata_contig33146.8895.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33146 104..2354 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33146.8895.1

>prot_H-paniculata_contig33146.8895.1 ID=prot_H-paniculata_contig33146.8895.1|Name=mRNA_H-paniculata_contig33146.8895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=168bp
KTLRALLESLRRHVQRGQHSAPTFTAFQLIEQLFRCVESLETETRLLLIR
PTSAPAALQRHEGRGGDGGGGGAGAARPSKKGGDGGGQGGGQGGGQGGGQ
GGNGIGNGFTESGRRPTDSPSSSPQITFPNESAYRLALTKLTAQLKAARE
RLRAEKVAVRSTGERAAQ
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mRNA from alignment at H-paniculata_contig33146:104..2354-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33146.8895.1 ID=mRNA_H-paniculata_contig33146.8895.1|Name=mRNA_H-paniculata_contig33146.8895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2251bp|location=Sequence derived from alignment at H-paniculata_contig33146:104..2354- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGACTCTGCGCGCGCTGTTGGAGTCCCTGCGTCGTCACGTCCAGCGAGG
TCAGCACTCCGCCCCAACGTTCACGGCCTTTCAGCTGATCGAACAGCTCT
TTCGTTGCGTCGAGAGCCTAGAGACAGAAACGCGACTGCTGCTCATAAGG
CCGACATCGGCGCCGGCGGCGCTACAGCGGCACGAAGGTCGCGGCGGTGA
TGGTGGCGGCGGTGGTGCTGGTGCTGCCCGGCCCTCGAAGAAGGGTGGTG
ATGGTGGTGGTCAAGGTGGTGGTCAAGGTGGTGGTCAAGGTGGTGGTCAA
GGTGGGAACGGAATCGGAAACGGATTCAGTAACGCGAGCGATATCGGGAG
GAATAGACCCAAAGCATATTTCATATAGTGTAGTGCAGTTAAGCTCCCTG
CTCCCTGCTCCCTGCTCGCTGCTCGCTCGCCTGCTTGCCTGCTTGCCTGG
TGTAGCCGTGTAGTTCCTTTTCGTCTTTTTGTCGTGTGTGTCAGTTGAAA
AAGCACCAAAGAAGGTTTTTTGCCTTCTATTGTTTGATTGATTTTTTTTA
TTCTTTTTACCTAATTCTGGAATTTGCATGCGATATAAGCTAAGATGGTA
TGTTATTTTTCCATAACATTTTTACGTACTGTACGTTATCCAAGAGATTT
TCGCAATGAATGAGGGTGATCCTGATCAACCCTTGGGACGATTTTTTCTC
GGGTGCAGAACTAATAGAGACTCTTATCGAAATTCTTGAGCAATACCCCC
CCCAATACCGTCCCCCGTGGTGTTTTAGAAGGCTATAAATTTCACATTTG
CGCACATTGTTCGTTTTCTTTTTTTGATGTTCCTTGATAATTACACCGCG
CCATTTTTTTTTTTTTCACACTGGCAGTAATAAACGCAAATGCTCATTGA
AGCAATTACATGAAGACGACATATGTCACTCCGTCAGATTTCGGGAAAAT
ACAAAAATCTTTGGAAAAAGGATTACTATTGATGGACTCTAGAAAGAACG
TCTTGTAATGGGCTTCTGAGAAAAAATTTCCATGCCCGTCAATTATCCGT
AAGCACCGTGGTATCATAAACCCGAACGACAGTCGCCACTCACTTCCGGT
GTCGGGTTCAACGATGGTTCTGTTGGAAATAATCGATCGACCTGAATAGT
CTCAACGAAGAGGGGATGAAAATGTATTTGAAAATCGGTTCATGGACCAT
GACCATTTCGCGAAGCGTAACTAGTGGACATCGTAGGTGGCGTCTTGGCT
TTTCTCGTTCACCGCTCATTCTGTAAGCATCTGGGGGATAAGCACGTGAA
CATGTGCGAACCAGCCGGTGTAAGGTCCAGGGCAGTGAAATATCTCCTAT
TTCATCTGGTAAGAACAAAGTAAACTATCGAATCCAACAAATTGTACCTG
CTGTATCAGCTCGTTAGTAATATTCTATTCCCCCGCCCCCCCTCTATCCG
CCCCCACCCGCTCGCCTGCCCTTTTCACTTGTTGGTACTTGGGTCTCCAG
TTTTACGGCTTGGTGCGAATATCAATATATTTTCTTTTTTATTGTCCCTT
TCCCCTGGTTGTTTTCCATTCGAGGAAAAAAAACCCCAAAAAACGTCATA
ACAGTAAAAACGTGCAACGTTGAGTTGAATCGTCTGTTGAATATATATAC
GCATGACAATATTGCCAACTTTAATCAACAAGTATTTTCTTACTCTTATC
GTTAATGACTTCTTAAACTATGTAAAACACTTGTTTTTACAGTAGAAAAA
ATACACTTTTTTCTCTCACTATGTGTGTGTGTGTGTGTGTGTATGTGCTT
TTTCGCCCATCTACCGATCCATATATCCATACATCTAGGCGACGGCCACT
GTGGCGGCGGCGGCAGCAGTAGCAACAGAGATCGCGAAGCTCTTCTTGCG
GAAGCCGATGCCATTATCGCAGCCTTGCGCAATGACAACAATCGCCTCCG
CAAAATCGTACAGAATGCCTCACGTGCCAAGCCAAGCACCTCGCCGTCGC
TGCCGCCGCCGCCGCCACCACCACCACCACCACCACCACCACTACCACCA
TCATCATCGCGCGACAAGTGGACAGCAGAGAGCGGGAGGAGACCAACTGA
CTCTCCGTCATCATCTCCACAAATAACGTTTCCCAACGAGAGCGCCTACC
GCCTGGCCCTGACCAAATTGACCGCGCAGTTAAAGGCAGCGAGAGAGAGA
CTGCGAGCAGAGAAGGTTGCCGTGCGGTCGACAGGGGAAAGAGCGGCACA
G
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Coding sequence (CDS) from alignment at H-paniculata_contig33146:104..2354-

>mRNA_H-paniculata_contig33146.8895.1 ID=mRNA_H-paniculata_contig33146.8895.1|Name=mRNA_H-paniculata_contig33146.8895.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at H-paniculata_contig33146:104..2354- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGACTCTGCGCGCGCTGTTGGAGTCCCTGCGTCGTCACGTCCAGCGAGG
TCAGCACTCCGCCCCAACGTTCACGGCCTTTCAGCTGATCGAACAGCTCT
TTCGTTGCGTCGAGAGCCTAGAGACAGAAACGCGACTGCTGCTCATAAGG
CCGACATCGGCGCCGGCGGCGCTACAGCGGCACGAAGGTCGCGGCGGTGA
TGGTGGCGGCGGTGGTGCTGGTGCTGCCCGGCCCTCGAAGAAGGGTGGTG
ATGGTGGTGGTCAAGGTGGTGGTCAAGGTGGTGGTCAAGGTGGTGGTCAA
GGTGGGAACGGAATCGGAAACGGATTCAAAGACTCTGCGCGCGCTGTTGG
AGTCCCTGCGTCGTCACGTCCAGCGAGGTCAGCACTCCGCCCCAACGTTC
ACGGCCTTTCAGCTGATCGAACAGCTCTTTCGTTGCGTCGAGAGCCTAGA
GACAGAAACGCGACTGCTGCTCATAAGGCCGACATCGGCGCCGGCGGCGC
TACAGCGGCACGAAGGTCGCGGCGGTGATGGTGGCGGCGGTGGTGCTGGT
GCTGCCCGGCCCTCGAAGAAGGGTGGTGATGGTGGTGGTCAAGGTGGTGG
TCAAGGTGGTGGTCAAGGTGGTGGTCAAGGTGGGAACGGAATCGGAAACG
GATTCACAGAGAGCGGGAGGAGACCAACTGACTCTCCGTCATCATCTCCA
CAAATAACGTTTCCCAACGAGAGCGCCTACCGCCTGGCCCTGACCAAATT
GACCGCGCAGTTAAAGGCAGCGAGAGAGAGACTGCGAGCAGAGAAGGTTG
CCGTGCGGTCGACAGGGGAAAGAGCGGCACAGCAGAGAGCGGGAGGAGAC
CAACTGACTCTCCGTCATCATCTCCACAAATAACGTTTCCCAACGAGAGC
GCCTACCGCCTGGCCCTGACCAAATTGACCGCGCAGTTAAAGGCAGCGAG
AGAGAGACTGCGAGCAGAGAAGGTTGCCGTGCGGTCGACAGGGGAAAGAG
CGGCACAG
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