mRNA_H-paniculata_contig3304.8868.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3304.8868.1
Unique NamemRNA_H-paniculata_contig3304.8868.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3304.8868.1 vs. uniprot
Match: D8LJD7_ECTSI (C2H2 zinc finger protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJD7_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 3.870e-20
Identity = 52/88 (59.09%), Postives = 73/88 (82.95%), Query Frame = 3 
Query:    3 ASLPRRLEEFMEESVGGLKISLRKAVDDMQMLNARRSNAGRLLDDEEDTWKEESKENEQLAALSEELQRVSRDNVALLDELQKIKSSQ 266
            ASLPRRLEEFMEESVG LK S+R+A+D M+ L+A+RSNAG + DDE++T ++E +E  +LA+LS +++RVS++N ALL EL K+K+ Q
Sbjct:  313 ASLPRRLEEFMEESVGDLKASVRQALDGMEELHAKRSNAGAIQDDEDETRRKEQQEKLRLASLSADMERVSKENSALLQELAKLKAPQ 400
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BLAST of mRNA_H-paniculata_contig3304.8868.1 vs. uniprot
Match: A0A6H5LKS3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKS3_9PHAE)

HSP 1 Score: 64.7 bits (156), Expect = 5.690e-9
Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = 3 
Query:  201 LQRVSRDNVALLDELQKIKSSQPLTESTCTVHAPEETEAPKTTPVLRLEDGKVSGSEVSPKDRIED--KLSRSSS-HDMVFPSNGERSAITIRVSRNDTCETLCAAIAAKLDIMEAR 542
            ++RVS++N ALL EL K+K+SQ    ST     P   + P    V++ E  +   S+   +D +      SR++S  ++ FP  G R A+ ++VSR  TCETLC +IA KLD+ +AR
Sbjct:    1 MERVSKENSALLQELAKLKASQAAASSTI----PSTIQTPAAVVVVKEESSRPEVSKAVSEDPVAPPPNSSRNTSIWELTFPVKGSRQAVVVQVSRKSTCETLCESIAEKLDVADAR 113
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3304.8868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJD7_ECTSI3.870e-2059.09C2H2 zinc finger protein n=1 Tax=Ectocarpus silicu... [more]
A0A6H5LKS3_9PHAE5.690e-938.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3304contigH-paniculata_contig3304:154..1959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.1
Seed ortholog evalue1.1e-12
Seed eggNOG ortholog2880.D8LJD7
Preferred nameDZIP1
KEGG koko:K16470
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001568,GO:0001578,GO:0001944,GO:0001947,GO:0002009,GO:0003006,GO:0003007,GO:0003143,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006355,GO:0006357,GO:0006606,GO:0006607,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006935,GO:0006996,GO:0007010,GO:0007017,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007368,GO:0007389,GO:0007399,GO:0007409,GO:0007411,GO:0007417,GO:0007420,GO:0007507,GO:0008104,GO:0008150,GO:0008589,GO:0009605,GO:0009653,GO:0009790,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010638,GO:0010646,GO:0015031,GO:0015630,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019222,GO:0019953,GO:0021536,GO:0021983,GO:0021984,GO:0022008,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0023051,GO:0023052,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030510,GO:0030900,GO:0031175,GO:0031290,GO:0031323,GO:0031326,GO:0031344,GO:0031346,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032880,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034451,GO:0034504,GO:0034613,GO:0035050,GO:0035082,GO:0035239,GO:0035270,GO:0035295,GO:0036064,GO:0040011,GO:0042221,GO:0042330,GO:0042886,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043393,GO:0044085,GO:0044087,GO:0044089,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045184,GO:0045185,GO:0045724,GO:0045995,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048583,GO:0048598,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048729,GO:0048731,GO:0048732,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051098,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051179,GO:0051220,GO:0051234,GO:0051235,GO:0051239,GO:0051252,GO:0051641,GO:0051649,GO:0051704,GO:0051716,GO:0060255,GO:0060271,GO:0060322,GO:0060429,GO:0060491,GO:0060562,GO:0061371,GO:0061512,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0072358,GO:0072359,GO:0072594,GO:0080090,GO:0090092,GO:0090287,GO:0097485,GO:0097539,GO:0097730,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120039,GO:1902017,GO:1902115,GO:1902117,GO:1903506,GO:1905330,GO:2000026,GO:2000027,GO:2000112,GO:2000223,GO:2000826,GO:2001141
EggNOG free text desc.Zinc finger protein
EggNOG OGs28IYV@1,2QRAI@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons5
Model size543
Cds size510
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3304.8868.1prot_H-paniculata_contig3304.8868.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3304 186..1959 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930022.059289-UTR-H-paniculata_contig3304:153..1851622930022.059289-UTR-H-paniculata_contig3304:153..185Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3304 154..185 +
1691481113.8684647-UTR-H-paniculata_contig3304:153..1851691481113.8684647-UTR-H-paniculata_contig3304:153..185Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3304 154..185 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930022.0773027-CDS-H-paniculata_contig3304:185..2271622930022.0773027-CDS-H-paniculata_contig3304:185..227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 186..227 +
1691481113.881255-CDS-H-paniculata_contig3304:185..2271691481113.881255-CDS-H-paniculata_contig3304:185..227Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 186..227 +
1622930022.0924795-CDS-H-paniculata_contig3304:666..7591622930022.0924795-CDS-H-paniculata_contig3304:666..759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 667..759 +
1691481113.8917425-CDS-H-paniculata_contig3304:666..7591691481113.8917425-CDS-H-paniculata_contig3304:666..759Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 667..759 +
1622930022.108081-CDS-H-paniculata_contig3304:902..10911622930022.108081-CDS-H-paniculata_contig3304:902..1091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 903..1091 +
1691481113.903408-CDS-H-paniculata_contig3304:902..10911691481113.903408-CDS-H-paniculata_contig3304:902..1091Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 903..1091 +
1622930022.1204076-CDS-H-paniculata_contig3304:1412..14841622930022.1204076-CDS-H-paniculata_contig3304:1412..1484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 1413..1484 +
1691481113.9137597-CDS-H-paniculata_contig3304:1412..14841691481113.9137597-CDS-H-paniculata_contig3304:1412..1484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 1413..1484 +
1622930022.134599-CDS-H-paniculata_contig3304:1845..19591622930022.134599-CDS-H-paniculata_contig3304:1845..1959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 1846..1959 +
1691481113.9325445-CDS-H-paniculata_contig3304:1845..19591691481113.9325445-CDS-H-paniculata_contig3304:1845..1959Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3304 1846..1959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3304.8868.1

>prot_H-paniculata_contig3304.8868.1 ID=prot_H-paniculata_contig3304.8868.1|Name=mRNA_H-paniculata_contig3304.8868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=170bp
MEESVGGLKISLRKAVDDMQMLNARRSNAGRLLDDEEDTWKEESKENEQL
AALSEELQRVSRDNVALLDELQKIKSSQPLTESTCTVHAPEETEAPKTTP
VLRLEDGKVSGSEVSPKDRIEDKLSRSSSHDMVFPSNGERSAITIRVSRN
DTCETLCAAIAAKLDIMEAR
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mRNA from alignment at H-paniculata_contig3304:154..1959+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3304.8868.1 ID=mRNA_H-paniculata_contig3304.8868.1|Name=mRNA_H-paniculata_contig3304.8868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1806bp|location=Sequence derived from alignment at H-paniculata_contig3304:154..1959+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGCGTCATTACCTCGAAGGCTGGAGGAGTTTATGGAGGAAAGCGTTGGT
GGTCTCAAGATCTCCCTCCGCAAGGTACACGCAAGTTCTTCAAATGCCCT
GCGTGCTCGCTGCGTGGGACTCGCTAAATTGTGTAACATGGGGCACTTTT
GGGTCTGGGTTGAGTAGTACCGTATTCGCTCGGCAAAGTACTGTCGACAC
AGTGGCACATTTTAACCAACTCCGACCTACGAAATTCAGGATACCGCAGG
CTGCAAGTGGATATTGTTGAAAAATCTTGTCTTCCGCGTGTTGCCGATAG
ACACAGACTGATTTGCAGATATTGCTAATCGTCTGACTATATTACCATCC
TATTCGAGACACTCTGTGCTCCCCAGGATGGGGTACAATCCGCAACATCC
AGCATTCCCATCTATAGGTTCGTGAACCTAATAGCACGGGGCCCTTTACA
GACGCTCACTCATAAAACCCGTGTATGTTTGGTCATTGCATGCTTCTCTG
TGATCAAGCGAAGGCCGTTGATGACATGCAAATGTTGAATGCCAGGCGGT
CTAACGCTGGAAGACTTCTGGACGATGAAGAAGACACGTGGAAAGAAGAA
AGCAAGGTGAAGAATGGACGAATGGTTTGCAAGTCTATGAGTAATCGCAT
ACTCTTATTTTCCCTTAACCGCTAAGTATTTCGAGACCTTGCAAATCTAA
TAACTACAAATTGCATGACCTGCTAACCACGGAATAACTTACTCTCCAGG
AGAATGAGCAACTGGCCGCTTTGTCTGAAGAATTGCAAAGGGTGTCAAGG
GACAACGTAGCGTTACTCGACGAACTGCAGAAGATCAAAAGCTCGCAGCC
GCTCACGGAATCCACATGTACCGTACATGCCCCAGAAGAAACCGAAGCAC
CAAAAACAACCCCGGTGCTCCGTCTAGAGGATGGCAAGGTATGGGTTGAC
GATTGCAGAATGCGGCTGATAATTCAACCAGCGCTTCATAGATCATTTGG
CCTCGGTGGCCGAGGGAGGTAGAAGTGATACTGATATTTGCGTTGATTTA
TCCGTGCACCTCTTGATCTCCAGTAGCGAACGACGTCGCGAGACTGCGAA
AATATTCCTCCTTCCTTTGTATGCACAGAGGAAACTAGGTATGACTGCGT
TGTTTCGTCCGAAATGTTAGGGATAGTGTTTTTGTCCGACCAAACCATGA
GACATCGCCAGCGCTCTCATCCAATATACCCTCAACCGTTCGTATCCCCC
CGAAATCAGGTGTCGGGATCAGAAGTGTCCCCAAAAGACAGGATCGAGGA
CAAGCTTAGCAGGAGTTCCTCTCATGATATGGTGAGCGCTGCTACTGCAG
TTCTCGACTATCCGCCTTTGCCATGATGCGCGGTGCACAGCTCGTTGAAA
TGAAGGCATGTCGCAGTCGTGGACTTTTGTTTGTGCACACTATTGTGCTG
GCAGTTTGCTTTCGTATCTGACCAAAACTCAGGTATTTGATACATGCATG
ATTGCTCATTTCACACCCCGGCATAGCTTTCAAGGATCTGTGTACATGCC
ACGTCTAGCCACTACCCCTCAAGTACAACAAATGTAGATATCATTTGCGC
ACGATGCAATGCCCGTGCACAATTGACCTGACACTTGCGTTGACATGGTT
GTATGGGTCTCGTGCTACGTGTTACTGGTTGGTTTTTGTCAGGTGTTTCC
CTCAAATGGCGAGAGGTCTGCCATTACTATCCGTGTGTCCCGAAACGATA
CTTGCGAGACACTGTGCGCGGCCATCGCAGCTAAGTTGGACATAATGGAA
GCACGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3304:154..1959+

>mRNA_H-paniculata_contig3304.8868.1 ID=mRNA_H-paniculata_contig3304.8868.1|Name=mRNA_H-paniculata_contig3304.8868.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1020bp|location=Sequence derived from alignment at H-paniculata_contig3304:154..1959+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGGAAAGCGTTGGTGGTCTCAAGATCTCCCTCCGCAAGATGGAGGA
AAGCGTTGGTGGTCTCAAGATCTCCCTCCGCAAGGCCGTTGATGACATGC
AAATGTTGAATGCCAGGCGGTCTAACGCTGGAAGACTTCTGGACGATGAA
GAAGACACGTGGAAAGAAGAAAGCAAGGCCGTTGATGACATGCAAATGTT
GAATGCCAGGCGGTCTAACGCTGGAAGACTTCTGGACGATGAAGAAGACA
CGTGGAAAGAAGAAAGCAAGGAGAATGAGCAACTGGCCGCTTTGTCTGAA
GAATTGCAAAGGGTGTCAAGGGACAACGTAGCGTTACTCGACGAACTGCA
GAAGATCAAAAGCTCGCAGCCGCTCACGGAATCCACATGTACCGTACATG
CCCCAGAAGAAACCGAAGCACCAAAAACAACCCCGGTGCTCCGTCTAGAG
GATGGCAAGGAGAATGAGCAACTGGCCGCTTTGTCTGAAGAATTGCAAAG
GGTGTCAAGGGACAACGTAGCGTTACTCGACGAACTGCAGAAGATCAAAA
GCTCGCAGCCGCTCACGGAATCCACATGTACCGTACATGCCCCAGAAGAA
ACCGAAGCACCAAAAACAACCCCGGTGCTCCGTCTAGAGGATGGCAAGGT
GTCGGGATCAGAAGTGTCCCCAAAAGACAGGATCGAGGACAAGCTTAGCA
GGAGTTCCTCTCATGATATGGTGTCGGGATCAGAAGTGTCCCCAAAAGAC
AGGATCGAGGACAAGCTTAGCAGGAGTTCCTCTCATGATATGGTGTTTCC
CTCAAATGGCGAGAGGTCTGCCATTACTATCCGTGTGTCCCGAAACGATA
CTTGCGAGACACTGTGCGCGGCCATCGCAGCTAAGTTGGACATAATGGAA
GCACGGGTGTTTCCCTCAAATGGCGAGAGGTCTGCCATTACTATCCGTGT
GTCCCGAAACGATACTTGCGAGACACTGTGCGCGGCCATCGCAGCTAAGT
TGGACATAATGGAAGCACGG
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