mRNA_H-paniculata_contig33005.8858.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: A0A6H5J8S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8S8_9PHAE) HSP 1 Score: 95.9 bits (237), Expect = 1.020e-21 Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 1
Query: 1 VLDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLSTE 171
VL+WLIT DGVYVDCTLGGGGHSAALL ALG+RARV+GLDRDP ALREASARL+ E
Sbjct: 382 VLEWLITKPDGVYVDCTLGGGGHSAALLSALGARARVIGLDRDPDALREASARLTAE 438
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: D7FXR7_ECTSI (S-adenosyl-methyltransferase MraW n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR7_ECTSI) HSP 1 Score: 93.2 bits (230), Expect = 2.530e-21 Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 1
Query: 1 VLDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLSTE 171
VL+WLIT DGVYVDCTLGGGGHSAALL ALG+ ARV+GLDRDP ALREASARL+ E
Sbjct: 6 VLEWLITKPDGVYVDCTLGGGGHSAALLSALGAGARVIGLDRDPDALREASARLAAE 62
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: A0A835Z182_9STRA (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z182_9STRA) HSP 1 Score: 78.6 bits (192), Expect = 6.550e-16 Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 1
Query: 1 VLDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLST 168
VL+WLITD++G+YVD TLGGGGHS ALL LGS RV+GLDRDP AL AS RL +
Sbjct: 3 VLEWLITDQEGIYVDGTLGGGGHSLALLNTLGSGGRVIGLDRDPEALAAASERLKS 58
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: A0A2H0JNA9_9BACT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Bacteroidetes bacterium CG12_big_fil_rev_8_21_14_0_65_60_17 TaxID=1973924 RepID=A0A2H0JNA9_9BACT) HSP 1 Score: 74.7 bits (182), Expect = 1.590e-14 Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 1
Query: 1 VLDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLST 168
V D LITD DGVYVD TLGGGGH+ AL ALG ARV+GLDRDP AL A+ARL +
Sbjct: 17 VADRLITDPDGVYVDATLGGGGHTHALFDALGDEARVIGLDRDPEALETATARLES 72
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: A0A7V5VCF8_9BACT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V5VCF8_9BACT) HSP 1 Score: 72.4 bits (176), Expect = 1.080e-13 Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1
Query: 1 VLDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLSTE 171
V+DWL+T+ DG+Y+D TLGGGGH+ ALL LG ARV+G+DRD A+ AS RL+ E
Sbjct: 5 VIDWLVTNPDGIYIDATLGGGGHTTALLQKLGVNARVIGIDRDTEAIDAASRRLAGE 61
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: UPI001423BCA7 (16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH n=1 Tax=Rhodocaloribacter litoris TaxID=2558931 RepID=UPI001423BCA7) HSP 1 Score: 71.6 bits (174), Expect = 2.470e-13 Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 1 VLDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLSTE 171
V++ L+TD DGVYVD TLGGGGH+AALL L RV+GLDRDPAAL ARL E
Sbjct: 32 VVEGLVTDPDGVYVDATLGGGGHTAALLDVLAPGGRVIGLDRDPAALAAVRARLPAE 88
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: A0A7Y2ERI3_9BACT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Rhodothermales bacterium TaxID=2306054 RepID=A0A7Y2ERI3_9BACT) HSP 1 Score: 70.9 bits (172), Expect = 4.460e-13 Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 1
Query: 1 VLDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLSTE 171
V++ LITD G YVDCTLGGGGHS ALL L A V+G+DRDP A+REA RLS +
Sbjct: 22 VVEILITDPAGTYVDCTLGGGGHSHALLDVLAPEATVIGIDRDPEAIREARRRLSAD 78
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: A0A359EWX9_9FIRM (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Acidaminococcaceae bacterium TaxID=2049052 RepID=A0A359EWX9_9FIRM) HSP 1 Score: 70.5 bits (171), Expect = 5.650e-13 Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1
Query: 4 LDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARL 162
+DWL+TDRDG+YVDCTLGG GHSA ++ L + R+VG+D+D AL AS RL
Sbjct: 14 IDWLVTDRDGIYVDCTLGGAGHSAEIVSHLSDQGRLVGIDQDDDALAAASERL 66
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: A0A271J7L3_9BACT (Ribosomal RNA small subunit methyltransferase H n=2 Tax=Rubrivirga marina TaxID=1196024 RepID=A0A271J7L3_9BACT) HSP 1 Score: 68.6 bits (166), Expect = 3.380e-12 Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 1
Query: 4 LDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLS 165
LD LITD G+YVD TLGGGGHSAALL ALG A VVG+D+DP AL A ARL+
Sbjct: 31 LDLLITDPAGLYVDGTLGGGGHSAALLDALGEGALVVGIDQDPEALATARARLA 84
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: A0A522BH68_9BACT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=bacterium TaxID=1869227 RepID=A0A522BH68_9BACT) HSP 1 Score: 67.8 bits (164), Expect = 6.100e-12 Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1
Query: 4 LDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLS 165
++ LITDR+GVYVD TLGGGGH+ A+L ALG R++G+DRDP AL E RLS
Sbjct: 31 VESLITDREGVYVDGTLGGGGHARAILEALGPGGRLIGIDRDPEALEECRKRLS 84 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig33005.8858.1 >prot_H-paniculata_contig33005.8858.1 ID=prot_H-paniculata_contig33005.8858.1|Name=mRNA_H-paniculata_contig33005.8858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp VLDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREAback to top mRNA from alignment at H-paniculata_contig33005:228..398+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig33005.8858.1 ID=mRNA_H-paniculata_contig33005.8858.1|Name=mRNA_H-paniculata_contig33005.8858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at H-paniculata_contig33005:228..398+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig33005:228..398+ >mRNA_H-paniculata_contig33005.8858.1 ID=mRNA_H-paniculata_contig33005.8858.1|Name=mRNA_H-paniculata_contig33005.8858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig33005:228..398+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |