mRNA_H-paniculata_contig33005.8858.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig33005.8858.1
Unique NamemRNA_H-paniculata_contig33005.8858.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: A0A6H5J8S8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8S8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 1.020e-21
Identity = 48/57 (84.21%), Postives = 52/57 (91.23%), Query Frame = 1
Query:    1 VLDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLSTE 171
            VL+WLIT  DGVYVDCTLGGGGHSAALL ALG+RARV+GLDRDP ALREASARL+ E
Sbjct:  382 VLEWLITKPDGVYVDCTLGGGGHSAALLSALGARARVIGLDRDPDALREASARLTAE 438          
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: D7FXR7_ECTSI (S-adenosyl-methyltransferase MraW n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXR7_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 2.530e-21
Identity = 47/57 (82.46%), Postives = 51/57 (89.47%), Query Frame = 1
Query:    1 VLDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLSTE 171
            VL+WLIT  DGVYVDCTLGGGGHSAALL ALG+ ARV+GLDRDP ALREASARL+ E
Sbjct:    6 VLEWLITKPDGVYVDCTLGGGGHSAALLSALGAGARVIGLDRDPDALREASARLAAE 62          
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: A0A835Z182_9STRA (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z182_9STRA)

HSP 1 Score: 78.6 bits (192), Expect = 6.550e-16
Identity = 39/56 (69.64%), Postives = 45/56 (80.36%), Query Frame = 1
Query:    1 VLDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLST 168
            VL+WLITD++G+YVD TLGGGGHS ALL  LGS  RV+GLDRDP AL  AS RL +
Sbjct:    3 VLEWLITDQEGIYVDGTLGGGGHSLALLNTLGSGGRVIGLDRDPEALAAASERLKS 58          
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: A0A2H0JNA9_9BACT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Bacteroidetes bacterium CG12_big_fil_rev_8_21_14_0_65_60_17 TaxID=1973924 RepID=A0A2H0JNA9_9BACT)

HSP 1 Score: 74.7 bits (182), Expect = 1.590e-14
Identity = 39/56 (69.64%), Postives = 43/56 (76.79%), Query Frame = 1
Query:    1 VLDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLST 168
            V D LITD DGVYVD TLGGGGH+ AL  ALG  ARV+GLDRDP AL  A+ARL +
Sbjct:   17 VADRLITDPDGVYVDATLGGGGHTHALFDALGDEARVIGLDRDPEALETATARLES 72          
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: A0A7V5VCF8_9BACT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V5VCF8_9BACT)

HSP 1 Score: 72.4 bits (176), Expect = 1.080e-13
Identity = 34/57 (59.65%), Postives = 44/57 (77.19%), Query Frame = 1
Query:    1 VLDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLSTE 171
            V+DWL+T+ DG+Y+D TLGGGGH+ ALL  LG  ARV+G+DRD  A+  AS RL+ E
Sbjct:    5 VIDWLVTNPDGIYIDATLGGGGHTTALLQKLGVNARVIGIDRDTEAIDAASRRLAGE 61          
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: UPI001423BCA7 (16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH n=1 Tax=Rhodocaloribacter litoris TaxID=2558931 RepID=UPI001423BCA7)

HSP 1 Score: 71.6 bits (174), Expect = 2.470e-13
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    1 VLDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLSTE 171
            V++ L+TD DGVYVD TLGGGGH+AALL  L    RV+GLDRDPAAL    ARL  E
Sbjct:   32 VVEGLVTDPDGVYVDATLGGGGHTAALLDVLAPGGRVIGLDRDPAALAAVRARLPAE 88          
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: A0A7Y2ERI3_9BACT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Rhodothermales bacterium TaxID=2306054 RepID=A0A7Y2ERI3_9BACT)

HSP 1 Score: 70.9 bits (172), Expect = 4.460e-13
Identity = 36/57 (63.16%), Postives = 42/57 (73.68%), Query Frame = 1
Query:    1 VLDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLSTE 171
            V++ LITD  G YVDCTLGGGGHS ALL  L   A V+G+DRDP A+REA  RLS +
Sbjct:   22 VVEILITDPAGTYVDCTLGGGGHSHALLDVLAPEATVIGIDRDPEAIREARRRLSAD 78          
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: A0A359EWX9_9FIRM (Ribosomal RNA small subunit methyltransferase H n=1 Tax=Acidaminococcaceae bacterium TaxID=2049052 RepID=A0A359EWX9_9FIRM)

HSP 1 Score: 70.5 bits (171), Expect = 5.650e-13
Identity = 32/53 (60.38%), Postives = 41/53 (77.36%), Query Frame = 1
Query:    4 LDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARL 162
            +DWL+TDRDG+YVDCTLGG GHSA ++  L  + R+VG+D+D  AL  AS RL
Sbjct:   14 IDWLVTDRDGIYVDCTLGGAGHSAEIVSHLSDQGRLVGIDQDDDALAAASERL 66          
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: A0A271J7L3_9BACT (Ribosomal RNA small subunit methyltransferase H n=2 Tax=Rubrivirga marina TaxID=1196024 RepID=A0A271J7L3_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 3.380e-12
Identity = 38/54 (70.37%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    4 LDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLS 165
            LD LITD  G+YVD TLGGGGHSAALL ALG  A VVG+D+DP AL  A ARL+
Sbjct:   31 LDLLITDPAGLYVDGTLGGGGHSAALLDALGEGALVVGIDQDPEALATARARLA 84          
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Match: A0A522BH68_9BACT (Ribosomal RNA small subunit methyltransferase H n=1 Tax=bacterium TaxID=1869227 RepID=A0A522BH68_9BACT)

HSP 1 Score: 67.8 bits (164), Expect = 6.100e-12
Identity = 34/54 (62.96%), Postives = 42/54 (77.78%), Query Frame = 1
Query:    4 LDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREASARLS 165
            ++ LITDR+GVYVD TLGGGGH+ A+L ALG   R++G+DRDP AL E   RLS
Sbjct:   31 VESLITDREGVYVDGTLGGGGHARAILEALGPGGRLIGIDRDPEALEECRKRLS 84          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig33005.8858.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8S8_9PHAE1.020e-2184.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXR7_ECTSI2.530e-2182.46S-adenosyl-methyltransferase MraW n=1 Tax=Ectocarp... [more]
A0A835Z182_9STRA6.550e-1669.64Ribosomal RNA small subunit methyltransferase H n=... [more]
A0A2H0JNA9_9BACT1.590e-1469.64Ribosomal RNA small subunit methyltransferase H n=... [more]
A0A7V5VCF8_9BACT1.080e-1359.65Ribosomal RNA small subunit methyltransferase H n=... [more]
UPI001423BCA72.470e-1364.9116S rRNA (cytosine(1402)-N(4))-methyltransferase R... [more]
A0A7Y2ERI3_9BACT4.460e-1363.16Ribosomal RNA small subunit methyltransferase H n=... [more]
A0A359EWX9_9FIRM5.650e-1360.38Ribosomal RNA small subunit methyltransferase H n=... [more]
A0A271J7L3_9BACT3.380e-1270.37Ribosomal RNA small subunit methyltransferase H n=... [more]
A0A522BH68_9BACT6.100e-1262.96Ribosomal RNA small subunit methyltransferase H n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig33005contigH-paniculata_contig33005:228..398 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue7.2e-17
Seed eggNOG ortholog2880.D7FXR7
KEGG koko:K03438
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000154,GO:0001510,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008173,GO:0008649,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0016434,GO:0016740,GO:0016741,GO:0022613,GO:0031167,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0043170,GO:0043412,GO:0043414,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0070475,GO:0071424,GO:0071704,GO:0071840,GO:0090304,GO:0140098,GO:0140102,GO:1901360
EggNOG free text desc.rRNA (cytosine-N4-)-methyltransferase activity
EggNOG OGsCOG0275@1,KOG2782@2759
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain
Ec32 orthologEc-13_002630.1
EC2.1.1.199
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03009
Exons1
Model size171
Cds size171
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930020.834578-CDS-H-paniculata_contig33005:227..3981622930020.834578-CDS-H-paniculata_contig33005:227..398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33005 228..398 +
1691481113.3586032-CDS-H-paniculata_contig33005:227..3981691481113.3586032-CDS-H-paniculata_contig33005:227..398Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig33005 228..398 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig33005.8858.1prot_H-paniculata_contig33005.8858.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig33005 228..398 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig33005.8858.1

>prot_H-paniculata_contig33005.8858.1 ID=prot_H-paniculata_contig33005.8858.1|Name=mRNA_H-paniculata_contig33005.8858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=57bp
VLDWLITDRDGVYVDCTLGGGGHSAALLGALGSRARVVGLDRDPAALREA
SARLSTE
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mRNA from alignment at H-paniculata_contig33005:228..398+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig33005.8858.1 ID=mRNA_H-paniculata_contig33005.8858.1|Name=mRNA_H-paniculata_contig33005.8858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=171bp|location=Sequence derived from alignment at H-paniculata_contig33005:228..398+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATTGGACTGGCTCATTACAGACCGAGATGGTGTTTACGTGGACTGTAC TTTGGGCGGTGGAGGACACAGCGCGGCTTTGTTGGGTGCATTGGGGTCGA GGGCTAGGGTAGTGGGGTTAGACCGCGACCCCGCGGCCCTGAGGGAGGCA TCTGCAAGGCTATCGACTGAG
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Coding sequence (CDS) from alignment at H-paniculata_contig33005:228..398+

>mRNA_H-paniculata_contig33005.8858.1 ID=mRNA_H-paniculata_contig33005.8858.1|Name=mRNA_H-paniculata_contig33005.8858.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=342bp|location=Sequence derived from alignment at H-paniculata_contig33005:228..398+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTATTGGACTGGCTCATTACAGACCGAGATGGTGTTTACGTGGACTGTAC
TTTGGGCGGTGGAGGACACAGCGCGGCTTTGTTGGGTGCATTGGGGTCGA
GGGCTAGGGTAGTGGGGTTAGACCGCGACCCCGCGGCCCTGAGGGAGGCA
TCTGCAAGGCTATCGACTGAGGTATTGGACTGGCTCATTACAGACCGAGA
TGGTGTTTACGTGGACTGTACTTTGGGCGGTGGAGGACACAGCGCGGCTT
TGTTGGGTGCATTGGGGTCGAGGGCTAGGGTAGTGGGGTTAGACCGCGAC
CCCGCGGCCCTGAGGGAGGCATCTGCAAGGCTATCGACTGAG
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