mRNA_H-paniculata_contig32964.8837.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32964.8837.1
Unique NamemRNA_H-paniculata_contig32964.8837.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32964.8837.1 vs. uniprot
Match: D8LRM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRM9_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.340e-15
Identity = 49/92 (53.26%), Postives = 64/92 (69.57%), Query Frame = 1 
Query:  199 MADNPAPVVPTT-RDMQKISLSSKDAPISSAVVFIQPQNKAEIRRVISITPK-MLGLHEVELVGLPGPHYIDEQSVTVSGSGYCTILDVSLS 468
            MA++ +P VP    D QK+S SS DAP+  A V+   +N+AEI RV+S +P   +GLH+VEL GLP    I+EQS+TV GSG+CTILD S S
Sbjct:    1 MANSTSPTVPNACSDPQKVSFSSLDAPVKRATVY---KNRAEITRVVSFSPTDRVGLHKVELTGLPWNGSIEEQSLTVKGSGHCTILDASFS 89
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BLAST of mRNA_H-paniculata_contig32964.8837.1 vs. uniprot
Match: D8LRN7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRN7_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.760e-11
Identity = 44/90 (48.89%), Postives = 57/90 (63.33%), Query Frame = 1 
Query:  211 PAPVVPTTRDMQKISLSSKDAPISSAVVFIQPQNKAEIRRVISIT-PKMLGLHEVELVGLPGPHYIDEQSVTVSGSGYCTILDVSLSNTP 477
            P P VP     + +S SS DAPI +  VF   + KAE+ R+I+ + P  LG HEVEL  LP   +ID+ SV V+GSG+CTIL+VS S  P
Sbjct:    7 PPPSVPGADAPKAVSFSSSDAPIQAVTVF--RKGKAEVTRIINFSSPSSLGRHEVELADLPRS-FIDQTSVRVTGSGHCTILNVSYSEEP 93
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32964.8837.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LRM9_ECTSI1.340e-1553.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LRN7_ECTSI1.760e-1148.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32964contigH-paniculata_contig32964:1327..2583 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score86.7
Seed ortholog evalue8.1e-15
Seed eggNOG ortholog2880.D8LRM9
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515
EggNOG free text desc.Domain of unknown function (DUF4139)
EggNOG OGs28Q1A@1,2QWQ0@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size871
Cds size354
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32964.8837.1prot_H-paniculata_contig32964.8837.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32964 1525..2264 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930016.618121-UTR-H-paniculata_contig32964:1326..15241622930016.618121-UTR-H-paniculata_contig32964:1326..1524Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32964 1327..1524 +
1691481111.2759304-UTR-H-paniculata_contig32964:1326..15241691481111.2759304-UTR-H-paniculata_contig32964:1326..1524Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32964 1327..1524 +
1622930016.7068238-UTR-H-paniculata_contig32964:2264..25831622930016.7068238-UTR-H-paniculata_contig32964:2264..2583Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32964 2265..2583 +
1691481111.3045902-UTR-H-paniculata_contig32964:2264..25831691481111.3045902-UTR-H-paniculata_contig32964:2264..2583Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32964 2265..2583 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930016.6546416-CDS-H-paniculata_contig32964:1524..16951622930016.6546416-CDS-H-paniculata_contig32964:1524..1695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32964 1525..1695 +
1691481111.2862067-CDS-H-paniculata_contig32964:1524..16951691481111.2862067-CDS-H-paniculata_contig32964:1524..1695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32964 1525..1695 +
1622930016.68024-CDS-H-paniculata_contig32964:2081..22641622930016.68024-CDS-H-paniculata_contig32964:2081..2264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32964 2082..2264 +
1691481111.294838-CDS-H-paniculata_contig32964:2081..22641691481111.294838-CDS-H-paniculata_contig32964:2081..2264Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32964 2082..2264 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32964.8837.1

>prot_H-paniculata_contig32964.8837.1 ID=prot_H-paniculata_contig32964.8837.1|Name=mRNA_H-paniculata_contig32964.8837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=118bp
MADNPAPVVPTTRDMQKISLSSKDAPISSAVVFIQPQNKAEIRRVISITP
KMLGLHEVELVGLPGPHYIDEQSVTVSGSGYCTILDVSLSNTPVGGDALQ
IVSQQTYYENYTDVISA*
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mRNA from alignment at H-paniculata_contig32964:1327..2583+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32964.8837.1 ID=mRNA_H-paniculata_contig32964.8837.1|Name=mRNA_H-paniculata_contig32964.8837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1257bp|location=Sequence derived from alignment at H-paniculata_contig32964:1327..2583+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCCCAACGCCTTTCATACCCCACACGTCATCAGTCACCCACGTCAACCT
GCGAGACTGCACAACACATACGTTGCATCTACTCAGGAAGGGTCGGTACG
CTTTGTTACAGAGGGTATTTCTTCACTCGAGTTCTCCTCTGCTCAGAGCT
TCGACACTTTTTGTTGAACGTTTATACTGGTATTTGGTTTAATCCACCAT
GGCCGACAACCCTGCGCCCGTTGTCCCGACTACACGTGACATGCAGAAGA
TCTCCCTCTCCAGCAAAGACGCCCCTATCAGTTCTGCAGTTGTTTTCATC
CAACCTCAAAACAAGGCCGAGATCAGAAGAGTGATTTCGATCACGCCCAA
GATGCTGGGTCTACACGAGGTGCGGTAGATCATCCCTGTGAATCTGCAAT
GTTCATGTACAGCATAGCTATTTATATTTCTCCGCACTCGAGCCGCACTG
CACTGTTGTATGTTCATGGTTGTACTGACTGACTGTACGCATCACTGCAG
CATGTACCCAACCGTTGATCCGCCCTTCGTGTCGTTCGCGTATGGGATAA
TTCAGGTAGTCGTTCTTCCACCACTCACTGAGTCGCCGAGTAAAAGGTGT
GTCGATCTCCTTGAGCGTATCCGGTTCAGGATCATGCGAACGCGGAAAAC
CGCGGATGATGCGGTGAAAGGTGACGTCAAGAAGCTAGGTGTGCCTAACA
CCCCACCCTCCTTGTGCTGTCGTTCTCGGGCCTTTCAATAACACGCATGT
ATAAGGTGGAGCTGGTGGGTCTCCCGGGACCTCACTACATCGATGAGCAG
AGCGTCACGGTTAGCGGTTCCGGGTATTGCACTATCCTGGATGTTTCACT
CTCCAACACTCCTGTCGGTGGTGATGCTCTACAAATTGTGAGTCAGCAAA
CATACTACGAAAATTATACAGACGTAATTAGTGCATAACGACGATTATCA
TCGGCATGATCGCAATCGCGCTCACATCTCAAGTGAATGAGCAATGAAGG
TCCGGCGATACCTTCATGCCCGAATCTCTTCATATAGTAGCTGACCTTCA
AACCTTCATCCATGTTTTGTATTCTCTCGTAATTTTTTTTTAACCCCCTG
AAAGCTAAGGTAAAAACCGCTATCCGATGCTTCCGTACCGAAGTAGGCCT
ACACTTCCTTTAACAGAACAGATTTATTTGTTCCTCTGCGGGGTAGGCGC
CATCCCGGTTCGGCTGAACCAAGCAGGCAGTTTGGGGGTTGCACCCACTA
AAAGACC
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Coding sequence (CDS) from alignment at H-paniculata_contig32964:1327..2583+

>mRNA_H-paniculata_contig32964.8837.1 ID=mRNA_H-paniculata_contig32964.8837.1|Name=mRNA_H-paniculata_contig32964.8837.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=708bp|location=Sequence derived from alignment at H-paniculata_contig32964:1327..2583+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCCGACAACCCTGCGCCCGTTGTCCCGACTACACGTGACATGCAGAA
GATCTCCCTCTCCAGCAAAGACGCCCCTATCAGTTCTGCAGTTGTTTTCA
TCCAACCTCAAAACAAGGCCGAGATCAGAAGAGTGATTTCGATCACGCCC
AAGATGCTGGGTCTACACGAGATGGCCGACAACCCTGCGCCCGTTGTCCC
GACTACACGTGACATGCAGAAGATCTCCCTCTCCAGCAAAGACGCCCCTA
TCAGTTCTGCAGTTGTTTTCATCCAACCTCAAAACAAGGCCGAGATCAGA
AGAGTGATTTCGATCACGCCCAAGATGCTGGGTCTACACGAGGTGGAGCT
GGTGGGTCTCCCGGGACCTCACTACATCGATGAGCAGAGCGTCACGGTTA
GCGGTTCCGGGTATTGCACTATCCTGGATGTTTCACTCTCCAACACTCCT
GTCGGTGGTGATGCTCTACAAATTGTGAGTCAGCAAACATACTACGAAAA
TTATACAGACGTAATTAGTGCATAAGTGGAGCTGGTGGGTCTCCCGGGAC
CTCACTACATCGATGAGCAGAGCGTCACGGTTAGCGGTTCCGGGTATTGC
ACTATCCTGGATGTTTCACTCTCCAACACTCCTGTCGGTGGTGATGCTCT
ACAAATTGTGAGTCAGCAAACATACTACGAAAATTATACAGACGTAATTA
GTGCATAA
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