mRNA_H-paniculata_contig32702.8779.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32702.8779.1
Unique NamemRNA_H-paniculata_contig32702.8779.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig32702.8779.1 vs. uniprot
Match: D7FV42_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV42_ECTSI)

HSP 1 Score: 127 bits (320), Expect = 5.820e-32
Identity = 63/113 (55.75%), Postives = 73/113 (64.60%), Query Frame = 1 
Query:    1 DKVCMACLDGFTDDSTH--IVYCDGCGIPVHQSCYGIQDIKADFFCDRCLELTKLAKPGKIPVSS-VKCALCLVIHGAMKRTIDGQFVHIACLMTAPGARMSDLVKKTKIDIS 330
            D VCM C DG TD+S +  IVYCDGC + VH  CYGIQD KADF CDRC  L +L    K      V C LC  IHGA+KRT  G+F H+ CL+ +PG RM DL  K +IDIS
Sbjct:  882 DAVCMVCFDGSTDESGNLTIVYCDGCDMSVHTDCYGIQDPKADFVCDRCTRLRELEAESKQTTGDEVNCFLCPNIHGALKRTTCGRFAHMTCLLMSPGVRMGDLKHKRRIDIS 994
[Close]
BLAST of mRNA_H-paniculata_contig32702.8779.1 vs. uniprot
Match: A0A6H5LHH7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHH7_9PHAE)

HSP 1 Score: 127 bits (320), Expect = 5.840e-32
Identity = 63/113 (55.75%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:    1 DKVCMACLDGFTDDSTH--IVYCDGCGIPVHQSCYGIQDIKADFFCDRCLELTKLAKPGK-IPVSSVKCALCLVIHGAMKRTIDGQFVHIACLMTAPGARMSDLVKKTKIDIS 330
            D VCM C DG TD+S +  IVYCDGC + VH  CYGIQD KADF CDRC  L +L    K +    V C LC  IHGA+KRT  G+F H+ CL+ +PG RM DL  K +IDIS
Sbjct:  782 DAVCMVCFDGSTDESGNLTIVYCDGCDMSVHTDCYGIQDPKADFVCDRCTRLRELEAGSKQMTGDEVNCFLCPNIHGALKRTTCGRFAHMTCLLMSPGVRMGDLKHKKRIDIS 894
[Close]
BLAST of mRNA_H-paniculata_contig32702.8779.1 vs. uniprot
Match: A0A1V9ZCG9_9STRA (Kinesin n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZCG9_9STRA)

HSP 1 Score: 98.6 bits (244), Expect = 1.030e-21
Identity = 43/102 (42.16%), Postives = 68/102 (66.67%), Query Frame = 1 
Query:    1 DKVCMACLDGFTDDSTHIVYCDGCGIPVHQSCYGIQDI-KADFFCDRCLELTKLAKPGKIPVSSVKCALCLVIHGAMKRTIDGQFVHIACLMTAPGARMSDL 303
            D  C+ C DG ++DS  I++CD C I VHQ CYG+ +I K++FFCDRC+         K P + V C LC +  GA+K+T++G +VH+AC + +P A+++++
Sbjct:  777 DGTCVICFDGVSEDSNPIIFCDNCDIAVHQRCYGVAEIPKSEFFCDRCIA------QRKNPCALVFCQLCPMRDGALKQTMEGAWVHVACALWSPSAQIANI 872
[Close]
BLAST of mRNA_H-paniculata_contig32702.8779.1 vs. uniprot
Match: A0A7S1G3S2_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1G3S2_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 9.140e-21
Identity = 47/111 (42.34%), Postives = 65/111 (58.56%), Query Frame = 1 
Query:    1 DKVCMACLDGFTDDSTHIVYCDGCGIPVHQSCYGIQDIK-ADFFCDRCLELTKLAKPGKIPVSSVKCALCLVIHGAMKRTIDGQFVHIACLMTAPGARMSDLVKKTKIDIS 330
            D VC+ C DG +  +  IVYCDGC +  HQSCYG+Q I   D++CDRC    +  K G      V CALC    GA+K T DG++ H+ C +  PG  +S++ +   ID+S
Sbjct:  707 DAVCVVCFDGDSTATNEIVYCDGCNVGAHQSCYGVQTIPDGDWYCDRC----RYIKNGG-DRRHVTCALCPFADGALKPTNDGRWAHVVCALWTPGVWISNVTRMVGIDLS 812
[Close]
BLAST of mRNA_H-paniculata_contig32702.8779.1 vs. uniprot
Match: D3BEQ0_POLPP (PHD zinc finger-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BEQ0_POLPP)

HSP 1 Score: 93.2 bits (230), Expect = 7.970e-20
Identity = 43/95 (45.26%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 DKVCMACLDGFTDDSTHIVYCDGCGIPVHQSCYGIQDI-KADFFCDRCLELTKLAKPGKIPVSSVKCALCLVIHGAMKRTIDGQFVHIACLMTAP 282
            + VC  C DG +DD+  IVYCDGC I VHQ CYGI+ I +  +FC +C        P K  +S   C LC + +GA+K+T+DG++VH+ CL+  P
Sbjct:  363 EDVCSVCFDGTSDDTNQIVYCDGCDIAVHQECYGIRLIPEGHWFCQKC------ESPAKATIS---CRLCNMKNGALKQTVDGEWVHLVCLLNIP 448
[Close]
BLAST of mRNA_H-paniculata_contig32702.8779.1 vs. uniprot
Match: A0A3R6YYM7_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R6YYM7_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.080e-19
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:    1 DKVCMACLDGFTDDSTHIVYCDGCGIPVHQSCYGIQDI-KADFFCDRCLELTKLAKPGKIPVSSVKCALCLVIHGAMKRTIDGQFVHIACLMTAP 282
            D  C+ C+DG+++DS  I++CD C + VHQ CYG+  I K+DF+CD+C      AK   +P    +CALC   HGA+K+T++G +VH+ C +  P
Sbjct:  708 DGTCVVCMDGYSEDSNPIIFCDKCDVAVHQRCYGVATIPKSDFYCDKCS-----AKGPVVP----QCALCPHPHGALKQTVEGLWVHVFCALWCP 793
[Close]
BLAST of mRNA_H-paniculata_contig32702.8779.1 vs. uniprot
Match: A0A024UN41_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024UN41_9STRA)

HSP 1 Score: 92.8 bits (229), Expect = 1.090e-19
Identity = 41/95 (43.16%), Postives = 62/95 (65.26%), Query Frame = 1 
Query:    1 DKVCMACLDGFTDDSTHIVYCDGCGIPVHQSCYGIQDI-KADFFCDRCLELTKLAKPGKIPVSSVKCALCLVIHGAMKRTIDGQFVHIACLMTAP 282
            D  C+ C+DG+++DS  I++CD C + VHQ CYG+  I K+DF+CD+C      AK   +P    +CALC   HGA+K+T++G +VH+ C +  P
Sbjct:  845 DGTCVVCMDGYSEDSNPIIFCDKCDVAVHQRCYGVATIPKSDFYCDKCS-----AKGPVVP----QCALCPHPHGALKQTVEGLWVHVFCALWCP 930
[Close]
BLAST of mRNA_H-paniculata_contig32702.8779.1 vs. uniprot
Match: A0A6G0X3X1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X3X1_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.330e-18
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:    1 DKVCMACLDGFTDDSTHIVYCDGCGIPVHQSCYGIQDI-KADFFCDRCLELTKLAKPGKIPVSSVKCALCLVIHGAMKRTIDGQFVHIACLMTAP 282
            +  C+ C+DG ++D+  I++CD C + VHQ CYG+  I K+DFFCDRC           +    V+CALC    GA+K+T++G+++H+ C M  P
Sbjct:  799 EGTCVVCMDGTSEDANPIIFCDRCDLAVHQRCYGVATIPKSDFFCDRC-----------VANEPVQCALCPHPGGALKKTVEGKWIHLVCAMWCP 882
[Close]
BLAST of mRNA_H-paniculata_contig32702.8779.1 vs. uniprot
Match: A0A3L6UXH1_9STRA (PHD-type domain-containing protein (Fragment) n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3L6UXH1_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 3.940e-17
Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = 1 
Query:    1 DKVCMACLDGFTDDSTHIVYCDGCGIPVHQSCYGIQDI-KADFFCDRCLELTKLAKPGKIPVSSVKCALCLVIHGAMKRTIDGQFVHIACLMTAP 282
            D  C+ C+DG +++S  I++CD C + VHQ CYG+  I K+DFFC++C      +  G   V + +CALC   HGA+K+T++G +VH+ C +  P
Sbjct:  456 DGTCVICMDGTSEESNPIIFCDKCDVAVHQRCYGVATIPKSDFFCNKC------SVKG---VVAPQCALCPHPHGALKQTVEGHWVHVFCGLWCP 541
[Close]
BLAST of mRNA_H-paniculata_contig32702.8779.1 vs. uniprot
Match: W4H4H3_9STRA (Uncharacterized protein n=10 Tax=Aphanomyces astaci TaxID=112090 RepID=W4H4H3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 5.480e-17
Identity = 39/95 (41.05%), Postives = 60/95 (63.16%), Query Frame = 1 
Query:    1 DKVCMACLDGFTDDSTHIVYCDGCGIPVHQSCYGIQDI-KADFFCDRCLELTKLAKPGKIPVSSVKCALCLVIHGAMKRTIDGQFVHIACLMTAP 282
            D  C+ C+DG +++S  I++CD C + VHQ CYG+  I K+DFFC +C      +  G   V + +CALC   HGA+K+T++G +VH+ C +  P
Sbjct:  824 DGTCVICMDGTSEESNPIIFCDKCDVAVHQRCYGVATIPKSDFFCSKC------SVKG---VVAPQCALCPHPHGALKQTVEGHWVHVFCGLWCP 909
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32702.8779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FV42_ECTSI5.820e-3255.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LHH7_9PHAE5.840e-3255.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V9ZCG9_9STRA1.030e-2142.16Kinesin n=1 Tax=Thraustotheca clavata TaxID=74557 ... [more]
A0A7S1G3S2_9STRA9.140e-2142.34Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
D3BEQ0_POLPP7.970e-2045.26PHD zinc finger-containing protein n=1 Tax=Polysph... [more]
A0A3R6YYM7_9STRA1.080e-1943.16Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A024UN41_9STRA1.090e-1943.16Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A6G0X3X1_9STRA3.330e-1840.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A3L6UXH1_9STRA3.940e-1741.05PHD-type domain-containing protein (Fragment) n=3 ... [more]
W4H4H3_9STRA5.480e-1741.05Uncharacterized protein n=10 Tax=Aphanomyces astac... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32702contigH-paniculata_contig32702:1656..2351 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score121.7
Seed ortholog evalue2.1e-25
Seed eggNOG ortholog2880.D7FV42
Preferred namePHF14
KEGG koko:K02606,ko:K11380,ko:K22156,ko:K22184
KEGG Pathwayko04110,ko04111,ko04113,map04110,map04111,map04113
KEGG ModuleM00284
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006355,GO:0006357,GO:0007154,GO:0007267,GO:0007275,GO:0008150,GO:0008285,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009968,GO:0009987,GO:0010464,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010640,GO:0010642,GO:0010646,GO:0010648,GO:0019219,GO:0019222,GO:0023051,GO:0023052,GO:0023057,GO:0030154,GO:0030323,GO:0030324,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0032501,GO:0032502,GO:0035295,GO:0042127,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0045165,GO:0045168,GO:0045892,GO:0045934,GO:0046331,GO:0048286,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0060255,GO:0060541,GO:0065007,GO:0072201,GO:0080090,GO:1902679,GO:1903506,GO:1903507,GO:2000026,GO:2000112,GO:2000113,GO:2000583,GO:2000584,GO:2000790,GO:2000791,GO:2001141
EggNOG free text desc.negative regulation of platelet-derived growth factor receptor-alpha signaling pathway
EggNOG OGsCOG5141@1,KOG0954@2759,KOG0955@2759,KOG0957@2759
COG Functional cat.BQ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03036
Exons2
Model size330
Cds size318
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32702.8779.1prot_H-paniculata_contig32702.8779.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32702 1668..2351 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930008.9097455-UTR-H-paniculata_contig32702:1655..16671622930008.9097455-UTR-H-paniculata_contig32702:1655..1667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32702 1656..1667 +
1691481108.6302502-UTR-H-paniculata_contig32702:1655..16671691481108.6302502-UTR-H-paniculata_contig32702:1655..1667Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32702 1656..1667 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930008.921432-CDS-H-paniculata_contig32702:1667..18221622930008.921432-CDS-H-paniculata_contig32702:1667..1822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32702 1668..1822 +
1691481108.64211-CDS-H-paniculata_contig32702:1667..18221691481108.64211-CDS-H-paniculata_contig32702:1667..1822Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32702 1668..1822 +
1622930008.933041-CDS-H-paniculata_contig32702:2188..23511622930008.933041-CDS-H-paniculata_contig32702:2188..2351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32702 2189..2351 +
1691481108.6516826-CDS-H-paniculata_contig32702:2188..23511691481108.6516826-CDS-H-paniculata_contig32702:2188..2351Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32702 2189..2351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32702.8779.1

>prot_H-paniculata_contig32702.8779.1 ID=prot_H-paniculata_contig32702.8779.1|Name=mRNA_H-paniculata_contig32702.8779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MACLDGFTDDSTHIVYCDGCGIPVHQSCYGIQDIKADFFCDRCLELTKLA
KPGKIPVSSVKCALCLVIHGAMKRTIDGQFVHIACLMTAPGARMSDLVKK
TKIDIS
back to top

mRNA from alignment at H-paniculata_contig32702:1656..2351+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32702.8779.1 ID=mRNA_H-paniculata_contig32702.8779.1|Name=mRNA_H-paniculata_contig32702.8779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=696bp|location=Sequence derived from alignment at H-paniculata_contig32702:1656..2351+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GATAAGGTTTGCATGGCTTGCTTGGATGGTTTCACGGATGACTCGACCCA
CATTGTGTATTGCGATGGCTGCGGGATCCCGGTTCATCAGTCCTGCTATG
GAATTCAGGATATCAAGGCTGACTTCTTCTGCGACCGGTGCCTGGAACTC
ACGAAGCTCGCAAAACCGTGAGTTTTTATTTTAGCTGGCCTTTGTGTTTG
GGAGAGGAGGGGAGGAGAGGGGGAATGTTTGCCCTCTACTTGTTGTATAT
GTCATATTTTAATGGGTCGGCCTGTGTCGTCATTGTTTTTGTTGGGTGTT
AACGTTTTGAAGGTCTTGGAAGTTGTAAAATGTTGAGGATATTATCAGCA
ATACGTTGGGTTTCCGTTTTATGCTCGTTATGTTGTTGGTTTTCAACTGT
TTGCTTCCTCGCCGATTGGTTGGTGCATTTGTTGGCCTTTTCTGTTACTC
ACTGTTCGTTGGTATTTTTTCGTGGTTGGCTGTTGCGTCCGTCGTGTGTG
TATATGTGTGTGTTTGGTATTCCCTCACAGGAGAGGCAAGATTCCGGTAT
CCTCCGTAAAGTGTGCCCTGTGCCTGGTGATCCACGGCGCCATGAAGCGA
ACAATCGACGGCCAGTTCGTTCACATCGCTTGCCTAATGACCGCTCCGGG
CGCTCGCATGTCGGACCTGGTCAAAAAGACCAAAATTGACATCAGC
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig32702:1656..2351+

>mRNA_H-paniculata_contig32702.8779.1 ID=mRNA_H-paniculata_contig32702.8779.1|Name=mRNA_H-paniculata_contig32702.8779.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig32702:1656..2351+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTGCTTGGATGGTTTCACGGATGACTCGACCCACATTGTGTATTG
CGATGGCTGCGGGATCCCGGTTCATCAGTCCTGCTATGGAATTCAGGATA
TCAAGGCTGACTTCTTCTGCGACCGGTGCCTGGAACTCACGAAGCTCGCA
AAACCATGGCTTGCTTGGATGGTTTCACGGATGACTCGACCCACATTGTG
TATTGCGATGGCTGCGGGATCCCGGTTCATCAGTCCTGCTATGGAATTCA
GGATATCAAGGCTGACTTCTTCTGCGACCGGTGCCTGGAACTCACGAAGC
TCGCAAAACCAGGCAAGATTCCGGTATCCTCCGTAAAGTGTGCCCTGTGC
CTGGTGATCCACGGCGCCATGAAGCGAACAATCGACGGCCAGTTCGTTCA
CATCGCTTGCCTAATGACCGCTCCGGGCGCTCGCATGTCGGACCTGGTCA
AAAAGACCAAAATTGACATCAGCAGGCAAGATTCCGGTATCCTCCGTAAA
GTGTGCCCTGTGCCTGGTGATCCACGGCGCCATGAAGCGAACAATCGACG
GCCAGTTCGTTCACATCGCTTGCCTAATGACCGCTCCGGGCGCTCGCATG
TCGGACCTGGTCAAAAAGACCAAAATTGACATCAGC
back to top