mRNA_H-paniculata_contig3265.8772.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3265.8772.1
Unique NamemRNA_H-paniculata_contig3265.8772.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3265.8772.1 vs. uniprot
Match: A0A6H5JUF7_9PHAE (GCFC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JUF7_9PHAE)

HSP 1 Score: 65.5 bits (158), Expect = 2.340e-8
Identity = 63/137 (45.99%), Postives = 69/137 (50.36%), Query Frame = 1 
Query:  394 PVLSFGHEDEXXXXXXXXXXXXXXXXXXXXXXXXFRVKKSKASKAIARASKDG-KVPAAEQTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKRSSWHNATAGMYTAEGLAALRKSQAFTPKPSAS-SRER 798
            PVLSFGH   XXXXXXXXX               FRVKKSKASKA+A+A+K+  ++P A Q                                      R SWH ATAGMYT EGLA LR SQAFTPKPS   SRER
Sbjct:   74 PVLSFGHXXXXXXXXXXXXAAAGKGADGF-----FRVKKSKASKAMAKAAKEKTELPVAPQNNSA----------------------------------RGSWHTATAGMYTKEGLAELRSSQAFTPKPSGGRSRER 171
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3265.8772.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JUF7_9PHAE2.340e-845.99GCFC domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3265contigH-paniculata_contig3265:10155..11814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score80.5
Seed ortholog evalue1.3e-12
Seed eggNOG ortholog2880.D8LAU3
Preferred namePAXBP1
KEGG koko:K09061,ko:K13211,ko:K17536,ko:K20476
KEGG Pathwayko04013,map04013
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000245,GO:0000375,GO:0000377,GO:0000398,GO:0000976,GO:0000977,GO:0000978,GO:0000981,GO:0000982,GO:0000987,GO:0001012,GO:0001067,GO:0001078,GO:0001227,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003700,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005730,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006417,GO:0006725,GO:0006807,GO:0007049,GO:0008134,GO:0008150,GO:0008152,GO:0008284,GO:0008380,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0010638,GO:0014842,GO:0014857,GO:0016043,GO:0016070,GO:0016071,GO:0017148,GO:0019219,GO:0019222,GO:0022402,GO:0022607,GO:0022613,GO:0022618,GO:0030371,GO:0031056,GO:0031058,GO:0031060,GO:0031062,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032991,GO:0033043,GO:0033044,GO:0034248,GO:0034249,GO:0034622,GO:0034641,GO:0034645,GO:0042023,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043565,GO:0043933,GO:0044085,GO:0044212,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044786,GO:0045182,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051173,GO:0051246,GO:0051247,GO:0051248,GO:0051252,GO:0051253,GO:0051254,GO:0060255,GO:0065003,GO:0065007,GO:0070013,GO:0071008,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0140110,GO:1901360,GO:1901363,GO:1901576,GO:1902275,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1905269,GO:1990837,GO:1990904,GO:2000112,GO:2000113,GO:2000288,GO:2000291,GO:2001141,GO:2001252
EggNOG free text desc.RNA polymerase II proximal promoter sequence-specific DNA binding
EggNOG OGsKOG2136@1,KOG2136@2759
COG Functional cat.EGP
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01001,ko03000,ko03041,ko04131
Exons2
Model size809
Cds size807
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930007.9076884-CDS-H-paniculata_contig3265:10154..106791622930007.9076884-CDS-H-paniculata_contig3265:10154..10679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3265 10155..10679 +
1691481108.2549746-CDS-H-paniculata_contig3265:10154..106791691481108.2549746-CDS-H-paniculata_contig3265:10154..10679Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3265 10155..10679 +
1622930007.920051-CDS-H-paniculata_contig3265:11532..118141622930007.920051-CDS-H-paniculata_contig3265:11532..11814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3265 11533..11814 +
1691481108.2703116-CDS-H-paniculata_contig3265:11532..118141691481108.2703116-CDS-H-paniculata_contig3265:11532..11814Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3265 11533..11814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3265.8772.1prot_H-paniculata_contig3265.8772.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3265 10155..11814 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3265.8772.1

>prot_H-paniculata_contig3265.8772.1 ID=prot_H-paniculata_contig3265.8772.1|Name=mRNA_H-paniculata_contig3265.8772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=269bp
PPRAKGQTTQSSSMFKPRKKDRKRVVVRRSSKAEESSDEDPTELSKSPAV
AAASANVEMSIGDDGYFSDASVGTAPTPAAPPTPATEPNATSTTVTTAVA
SDSSNNSRVKKMRKKVKGGGKGGAEKSKGPKPVLSFGHEDEEDGLGGMVG
RKGGGDGGDRGAGGSFRVKKSKASKAIARASKDGKVPAAEQTTTTTPSPS
AAAAAATSSKKNGVTANPPPLSSTAAASKRSSWHNATAGMYTAEGLAALR
KSQAFTPKPSASSRERGRG
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mRNA from alignment at H-paniculata_contig3265:10155..11814+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3265.8772.1 ID=mRNA_H-paniculata_contig3265.8772.1|Name=mRNA_H-paniculata_contig3265.8772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1660bp|location=Sequence derived from alignment at H-paniculata_contig3265:10155..11814+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCCAGAGCAAAAGGGCAAACAACCCAGAGCAGCAGCATGTTCAAGCC
TCGTAAAAAAGACCGCAAGCGTGTGGTGGTTCGGAGATCAAGCAAGGCAG
AAGAATCTTCAGATGAGGACCCTACTGAGTTGTCCAAGTCTCCTGCCGTC
GCCGCCGCCTCCGCGAATGTTGAGATGTCAATCGGAGATGACGGCTACTT
CTCAGACGCAAGCGTCGGCACGGCGCCTACCCCTGCGGCGCCGCCGACAC
CTGCGACTGAACCAAACGCAACGTCGACGACAGTGACGACTGCGGTGGCA
TCTGATTCAAGCAACAACTCGCGGGTGAAGAAGATGCGCAAGAAAGTCAA
AGGCGGCGGGAAGGGCGGTGCGGAAAAGTCGAAGGGCCCAAAGCCGGTTT
TGAGTTTCGGGCATGAGGACGAGGAGGATGGACTGGGCGGGATGGTCGGG
AGGAAGGGGGGTGGAGACGGCGGTGATCGGGGTGCAGGGGGTTCGTTTCG
AGTTAAGAAGAGCAAGGCTAGCAAGGCGAGTGGTTATTTTGGTATCCTTT
GGCTTGCAGATTTTTAGGTTGTTACAGGCTGTGCGTGTTTTGGAGATAAT
CCAGACATATCAGATATTACAGACCGTAGGACTGCGTGAGACTGTGGATG
CGGCGGGTCCCTGCCGATGAATTTGAATTTTGTGTTGATTTTGGGTGAAA
TGTCAGATCCGCTGTGGTGGAATAATGTGGTGGAATAAAGTTTTGAACAC
ATTCAAAATCGCGCGTGAGTGCGGTATGTTCATGACTCTGCAGCCTCTAC
TGCGCCAAGGCAAGTTTGTTGGTGACATCAAGCAGTGATCCTCGGCCAGC
TATGGATAGACTCCCGGCGCAAAGGAGAGCTTGGGACCTTTCTGCCTCAC
AGACTATTCAGACTGGATGCTGCAGAATCGACAAACCAACTCCGCTAGAT
GGGTTTCCACGAAAAGCCCATGTCTCAGTTCATCTTAAAGCACACACACT
TCCGCCGGCCGCTCTACTTTGCTCTGCAACAGCAGTGGGCGCAAGTACCT
CAACACGAGTGCTCTTCGGGGTGAACCTGTTTATATTCGTTTTTATTTTT
TCGCCACCACATTTGACTACCGCTTGCAATTCAAGTCCTGTTAGTAGTGA
GATAGAATTCTCCCAACAACCTGCACCATTGTCATCCGAAACAACAAGGT
CGGTAGGCGCTCAACCAATACCCAATAATCCTGTATGAATAACTGTATGT
GGTCCAGCACGTGTCAATTCCGATGTTACCAACCTCACAGATTTAACGCG
TCGCATCGTACCATTTTCCACCCATCACGTTGATGTTGGGGAAATCACAA
CTCTCGCATGTGCACGCAATGCGGACAGGCTATCGCTAGAGCTTCTAAAG
ACGGCAAGGTACCAGCCGCCGAACAGACAACGACAACAACACCATCACCA
TCGGCGGCGGCGGCGGCGGCAACGTCGTCTAAGAAGAATGGTGTCACGGC
AAATCCGCCGCCATTATCATCAACGGCGGCGGCTTCGAAAAGAAGCTCGT
GGCATAACGCCACGGCAGGAATGTACACCGCGGAGGGCCTAGCGGCGCTT
AGGAAGAGCCAAGCCTTCACGCCTAAGCCATCGGCGTCGTCGCGCGAACG
TGGCAGGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig3265:10155..11814+

>mRNA_H-paniculata_contig3265.8772.1 ID=mRNA_H-paniculata_contig3265.8772.1|Name=mRNA_H-paniculata_contig3265.8772.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1614bp|location=Sequence derived from alignment at H-paniculata_contig3265:10155..11814+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACCCAGAGCAAAAGGGCAAACAACCCAGAGCAGCAGCATGTTCAAGCC
TCGTAAAAAAGACCGCAAGCGTGTGGTGGTTCGGAGATCAAGCAAGGCAG
AAGAATCTTCAGATGAGGACCCTACTGAGTTGTCCAAGTCTCCTGCCGTC
GCCGCCGCCTCCGCGAATGTTGAGATGTCAATCGGAGATGACGGCTACTT
CTCAGACGCAAGCGTCGGCACGGCGCCTACCCCTGCGGCGCCGCCGACAC
CTGCGACTGAACCAAACGCAACGTCGACGACAGTGACGACTGCGGTGGCA
TCTGATTCAAGCAACAACTCGCGGGTGAAGAAGATGCGCAAGAAAGTCAA
AGGCGGCGGGAAGGGCGGTGCGGAAAAGTCGAAGGGCCCAAAGCCGGTTT
TGAGTTTCGGGCATGAGGACGAGGAGGATGGACTGGGCGGGATGGTCGGG
AGGAAGGGGGGTGGAGACGGCGGTGATCGGGGTGCAGGGGGTTCGTTTCG
AGTTAAGAAGAGCAAGGCTAGCAAGCCACCCAGAGCAAAAGGGCAAACAA
CCCAGAGCAGCAGCATGTTCAAGCCTCGTAAAAAAGACCGCAAGCGTGTG
GTGGTTCGGAGATCAAGCAAGGCAGAAGAATCTTCAGATGAGGACCCTAC
TGAGTTGTCCAAGTCTCCTGCCGTCGCCGCCGCCTCCGCGAATGTTGAGA
TGTCAATCGGAGATGACGGCTACTTCTCAGACGCAAGCGTCGGCACGGCG
CCTACCCCTGCGGCGCCGCCGACACCTGCGACTGAACCAAACGCAACGTC
GACGACAGTGACGACTGCGGTGGCATCTGATTCAAGCAACAACTCGCGGG
TGAAGAAGATGCGCAAGAAAGTCAAAGGCGGCGGGAAGGGCGGTGCGGAA
AAGTCGAAGGGCCCAAAGCCGGTTTTGAGTTTCGGGCATGAGGACGAGGA
GGATGGACTGGGCGGGATGGTCGGGAGGAAGGGGGGTGGAGACGGCGGTG
ATCGGGGTGCAGGGGGTTCGTTTCGAGTTAAGAAGAGCAAGGCTAGCAAG
GCTATCGCTAGAGCTTCTAAAGACGGCAAGGTACCAGCCGCCGAACAGAC
AACGACAACAACACCATCACCATCGGCGGCGGCGGCGGCGGCAACGTCGT
CTAAGAAGAATGGTGTCACGGCAAATCCGCCGCCATTATCATCAACGGCG
GCGGCTTCGAAAAGAAGCTCGTGGCATAACGCCACGGCAGGAATGTACAC
CGCGGAGGGCCTAGCGGCGCTTAGGAAGAGCCAAGCCTTCACGCCTAAGC
CATCGGCGTCGTCGCGCGAACGTGGCAGGGGGGCTATCGCTAGAGCTTCT
AAAGACGGCAAGGTACCAGCCGCCGAACAGACAACGACAACAACACCATC
ACCATCGGCGGCGGCGGCGGCGGCAACGTCGTCTAAGAAGAATGGTGTCA
CGGCAAATCCGCCGCCATTATCATCAACGGCGGCGGCTTCGAAAAGAAGC
TCGTGGCATAACGCCACGGCAGGAATGTACACCGCGGAGGGCCTAGCGGC
GCTTAGGAAGAGCCAAGCCTTCACGCCTAAGCCATCGGCGTCGTCGCGCG
AACGTGGCAGGGGG
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