mRNA_H-paniculata_contig32574.8760.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32574.8760.1
Unique NamemRNA_H-paniculata_contig32574.8760.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig32574.8760.1 vs. uniprot
Match: D7FWB6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB6_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 8.520e-29
Identity = 65/93 (69.89%), Postives = 74/93 (79.57%), Query Frame = 1 
Query:    4 PEYVAMDPTTGAVTTLAKVVLDRGVSWEQALAKRVEATEAGMDPRPKADGTRTAG---PNGTGFYRSFHTDITTQRRLVLLAVRKARHHRLMV 273
            PE VA DP TGAVT LA+VVLDRGVSW+QALAKR EA +AGMD   K     T+G   P GTGFYRS HTDIT+QR+LV+LAVRKA+H+RLMV
Sbjct:  904 PEEVAKDPATGAVTQLAQVVLDRGVSWDQALAKRSEAADAGMDEAVKP----TSGAKPPKGTGFYRSRHTDITSQRKLVVLAVRKAKHNRLMV 992
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32574.8760.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FWB6_ECTSI8.520e-2969.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32574contigH-paniculata_contig32574:506..2413 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1.3e-22
Seed eggNOG ortholog2880.D7FWB6
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cellular response to interleukin-11
EggNOG OGsKOG1513@1,KOG1513@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size274
Cds size255
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32574.8760.1prot_H-paniculata_contig32574.8760.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32574 524..2413 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930006.046712-UTR-H-paniculata_contig32574:505..5231622930006.046712-UTR-H-paniculata_contig32574:505..523Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32574 506..523 +
1691481107.4435003-UTR-H-paniculata_contig32574:505..5231691481107.4435003-UTR-H-paniculata_contig32574:505..523Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32574 506..523 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930006.0647433-CDS-H-paniculata_contig32574:523..5621622930006.0647433-CDS-H-paniculata_contig32574:523..562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32574 524..562 +
1691481107.4572105-CDS-H-paniculata_contig32574:523..5621691481107.4572105-CDS-H-paniculata_contig32574:523..562Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32574 524..562 +
1622930006.0768168-CDS-H-paniculata_contig32574:1793..19041622930006.0768168-CDS-H-paniculata_contig32574:1793..1904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32574 1794..1904 +
1691481107.4672124-CDS-H-paniculata_contig32574:1793..19041691481107.4672124-CDS-H-paniculata_contig32574:1793..1904Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32574 1794..1904 +
1622930006.0890675-CDS-H-paniculata_contig32574:2308..24131622930006.0890675-CDS-H-paniculata_contig32574:2308..2413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32574 2309..2413 +
1691481107.4749236-CDS-H-paniculata_contig32574:2308..24131691481107.4749236-CDS-H-paniculata_contig32574:2308..2413Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32574 2309..2413 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32574.8760.1

>prot_H-paniculata_contig32574.8760.1 ID=prot_H-paniculata_contig32574.8760.1|Name=mRNA_H-paniculata_contig32574.8760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=85bp
MDPTTGAVTTLAKVVLDRGVSWEQALAKRVEATEAGMDPRPKADGTRTAG
PNGTGFYRSFHTDITTQRRLVLLAVRKARHHRLMV
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mRNA from alignment at H-paniculata_contig32574:506..2413+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32574.8760.1 ID=mRNA_H-paniculata_contig32574.8760.1|Name=mRNA_H-paniculata_contig32574.8760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1908bp|location=Sequence derived from alignment at H-paniculata_contig32574:506..2413+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ACCCCCGAGTATGTCGCCATGGATCCCACTACAGGGGCGGTGACGACTCT
GGCTAAGGTGAAGTAGTATCGGCGTTGTGTTTTTCAAAGGTTCTTGCTGA
CAAGTGTAGACCCACCCCATCGTGAACGTACCCACGCTAGATAGCACTTG
AGGTTAGGTGGATGGTTTCGTACCTCTACATCTTGGAAGATTAGGTACCA
CTTGTCGGCATCAGGCATCAAGATGTTCGTATCTTGGCCAAAGCACAGAA
AGCACGGCGATTGATTCACACCTGCCGGAGAAGCGTCTGAAAATGTATTG
TTGTGAGGGCTTTGGCGTGAGCAAACCCTGCCTCCCCCCTCAGCCCCGCC
CCCTGGCTGCAAAGGGTACCTCGCCGGAGGCAGAAAACTACCCATATTTG
GCCTAGTTCTTCGAAAATCGAATCCAAAATTGGCCATCGCAGCGTCGTAC
TTTACTTGCGCAAACATATATTTTCGCCGAGAAGATAAAAATGGATGGCC
TCAAGATTCAACGAAGGATAACATCATCGCACGGGTTCGGATTGCTTCTG
TGCTGGTAGAGCTAAATTACAGGAGGAAATGGGCAAGCTGTCTGCCACAG
GAAAGCTGGTGGCAATAGCATGTGTACAATTCATTGTTTAAGGACCACAG
CTGCAAGGAAATATGTCGGAATATTGATGTTTCGATTTGGTAATACAAAA
ATTTGGATCATGATCAATATATTGTGCAATATTTTGGTATCAATACATAG
CACCTGCGGAAAGAGTGGAACGTCACTAATACGGTGTCCATGGCTGAAGA
AATTCGTGTTTTCAATAGTGTAGTATGATGAGTGAGCTCAGGTGTATCAC
GGTACAGCAGTACACACACACACGAACAGTCTTCAACATCTCTCGAATTT
ACCTCCACCGACAGGTCCTCAGGGTAAGAGTCCCAAGAGCGGCGGCGATT
GTGCATCGAGCGCCGTTTGTCAATCGAACACGGAAAAAAATCGCTGCTCT
TCCTTTCGCGTTACAATGTCACTGTAACAGCCAGTGCAGACATCCGGCAG
GAAAGCTGAAGTCGTCGCACTTCAAGTAGCTCATTTCACCCGTAAGGTGG
AGGTGGGGCTCTCTACCTCATCTATTGCAGTAGCATGTGTCAAACGTAGC
ACTAATAATAGTAGTATAAGTAGTGCTTGTTTCAAGCTCCTTTAATTTCA
TAGCTATATACAATCTGGAATTCGCTCGTGCACACTGCGGATGCTGGGTG
AAACCCTTCCTGACGTTCTTACTCGATGACTTGGAAAGGTGGTGCTGGAC
CGTGGTGTGAGCTGGGAACAAGCACTGGCAAAGCGTGTAGAGGCGACAGA
AGCTGGGATGGATCCAAGACCCAAAGCAGACGGCACGAGGACAGCAGGGG
TAAGTAAGAGTGAAGTCACACTGTACCGTTTTTTTACGCGTTGCTCTTCT
GTTGGTACCGTGAGCGAAGAATATAAGCTGTGTAAACCCGAGTTGTTTTT
AGTCCCTAGCGTGTATACGAAATAGTAGATACGCGTGCGTTACTGTAGTT
TGTAACACTAGTACGTACCAGGTACACGCTCTTTTACACTCCTTTTTGAG
ATTTTAAGCTACTGACAGCGACCACCACCTTGTGGTTTGGTTAGCAATGT
AAAACGTACAGTATAGGGGAGGAGGTGTGGAATTTATGCTTAGCTCTCGA
TTTTATGCCCTTTCAACGCCCTTGAAGATTCGTGACGCTTGGCTTGACTT
TGCTATCCTTCTCTGTTTTGCTTGATGCAATGTTCAATGTTCTACTACAA
TAGCCCAACGGCACCGGCTTTTACCGCAGCTTTCATACCGACATTACAAC
ACAGCGGAGGCTAGTTCTGCTGGCTGTGCGCAAGGCCAGACACCACAGGT
TAATGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig32574:506..2413+

>mRNA_H-paniculata_contig32574.8760.1 ID=mRNA_H-paniculata_contig32574.8760.1|Name=mRNA_H-paniculata_contig32574.8760.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=510bp|location=Sequence derived from alignment at H-paniculata_contig32574:506..2413+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATCCCACTACAGGGGCGGTGACGACTCTGGCTAAGATGGATCCCAC
TACAGGGGCGGTGACGACTCTGGCTAAGGTGGTGCTGGACCGTGGTGTGA
GCTGGGAACAAGCACTGGCAAAGCGTGTAGAGGCGACAGAAGCTGGGATG
GATCCAAGACCCAAAGCAGACGGCACGAGGACAGCAGGGGTGGTGCTGGA
CCGTGGTGTGAGCTGGGAACAAGCACTGGCAAAGCGTGTAGAGGCGACAG
AAGCTGGGATGGATCCAAGACCCAAAGCAGACGGCACGAGGACAGCAGGG
CCCAACGGCACCGGCTTTTACCGCAGCTTTCATACCGACATTACAACACA
GCGGAGGCTAGTTCTGCTGGCTGTGCGCAAGGCCAGACACCACAGGTTAA
TGGTGCCCAACGGCACCGGCTTTTACCGCAGCTTTCATACCGACATTACA
ACACAGCGGAGGCTAGTTCTGCTGGCTGTGCGCAAGGCCAGACACCACAG
GTTAATGGTG
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