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Homology
BLAST of mRNA_H-paniculata_contig3257.8758.1 vs. uniprot
Match: D8LJX0_ECTSI (MutS protein homolog 4 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJX0_ECTSI) HSP 1 Score: 75.1 bits (183), Expect = 2.000e-12 Identity = 35/45 (77.78%), Postives = 43/45 (95.56%), Query Frame = 3
Query: 276 QGAELLKRLASGSVDAEMVSKYTALAASYCLLRYIENNTGHAFAN 410
+GAELLKRLASGSVDA+++SKYTALAASYCL+RY+EN+TG FA+
Sbjct: 76 KGAELLKRLASGSVDADLMSKYTALAASYCLIRYVENSTGSTFAD 120
BLAST of mRNA_H-paniculata_contig3257.8758.1 vs. uniprot
Match: A0A836CNW6_9STRA (Muts protein 4 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNW6_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 5.490e-7 Identity = 40/139 (28.78%), Postives = 60/139 (43.17%), Query Frame = 3
Query: 183 SNASFKVCAIVENRARETCIATIDTAHSSVLQ----------------------------------------------------------------GAELLKRLASGSVDAEMVSKYTALAASYCLLRYIENNTGHAFA 407
SN+ VCA+VENR+RETC+A +T+H+S+L+ GAELL+R+++ ++ A++ + Y LAA+ CLLRY+EN TGH A
Sbjct: 51 SNSGLVVCAVVENRSRETCVAVTNTSHASLLEITTLSDTQSYAQTMAHLESLQPQEILLHDGARSRVLSLKIVEAFHKDDESRVLFVSRQYFDQDKGAELLRRISTKNLGADVFATYIVLAATNCLLRYVENITGHGHA 189
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 75.9 |
| Seed ortholog evalue | 1.6e-11 |
| Seed eggNOG ortholog | 2880.D8LJX0 |
| Preferred name | MSH4 |
| KEGG ko | ko:K08740 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000003,GO:0000228,GO:0000280,GO:0000710,GO:0000793,GO:0000794,GO:0000795,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005911,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006310,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007059,GO:0007127,GO:0007129,GO:0007131,GO:0008094,GO:0008150,GO:0008152,GO:0009506,GO:0009987,GO:0010777,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0022402,GO:0022414,GO:0022607,GO:0030054,GO:0030983,GO:0031974,GO:0031981,GO:0033554,GO:0034641,GO:0035825,GO:0042623,GO:0043073,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045132,GO:0045143,GO:0046483,GO:0048285,GO:0050896,GO:0051026,GO:0051276,GO:0051321,GO:0051716,GO:0055044,GO:0061982,GO:0070013,GO:0070192,GO:0071704,GO:0071840,GO:0090304,GO:0097159,GO:0098813,GO:0099086,GO:0140013,GO:1901360,GO:1901363,GO:1903046 |
| EggNOG free text desc. | chiasma assembly |
| EggNOG OGs | COG0249@1,KOG0220@2759 |
| COG Functional cat. | L |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko03400 |
| Exons | 2 |
| Model size | 560 |
| Cds size | 393 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig3257.8758.1 >prot_H-paniculata_contig3257.8758.1 ID=prot_H-paniculata_contig3257.8758.1|Name=mRNA_H-paniculata_contig3257.8758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=131bp
MACPPPPSKKKKFSDAGAAARGCGSNSNASFKVCAIVENRARETCIATID TAHSSVLQGAELLKRLASGSVDAEMVSKYTALAASYCLLRYIENNTGHAF ANGRSVACVEAMNPKARSEGSGVTSAPVAG* back to topmRNA from alignment at H-paniculata_contig3257:3422..9908- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig3257.8758.1 ID=mRNA_H-paniculata_contig3257.8758.1|Name=mRNA_H-paniculata_contig3257.8758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=6487bp|location=Sequence derived from alignment at H-paniculata_contig3257:3422..9908- (Halopteris paniculata Hal_grac_a_UBK monoicous) GAGGACGCGAGGCTACGGTAGAATAGCAAAACCGAGTACGGCTATCTTTG
CATAGTGTCCTTTCCTCAGTATCTCCGCACTCTCCGTTACTGTCCTGTGC
AAACATGGCATGTCCTCCACCTCCATCGAAGAAAAAGAAGTTCAGTGATG
CTGGTGCTGCTGCTCGGGGCTGTGGGAGCAATAGCAATGCTTCGTTCAAG
GTCTGCGCTATTGTGGAGAATCGTGCGAGGGAAACGTGCATCGCCACAAT
AGACACAGCCCACTCTTCAGTGCTACAGGTTCGTCATGTTTGGTGATATA
TTTGGCGGGTGTTGGACAGGGCCACAGAGGGCTTGTCTTGATTAGTTGCT
TGCTTTTGTTTGCTCATGTATGTCTTCGCAACAGTTTTTTGAATTTTTGA
ATTCACGAGAAAAACCACACGGGTCAGAAGAGATCCAGATGACCCCTGTG
ACTGCGGGGAGTAAATGGGTGGGCGTGCAAACTTTGACTTGGTGCATGAG
TGAAAATTTGGTGTTTTTCGTGGTCTGTGTCGCTGACACAAGTTAGACCT
CCAGTTCTTCTGTTCACAACATGGAGTTTCGTATTTACCTTTCGTGAAAT
GTGTTCATTGCTGTACCCGAAACTCAACAATAAACACTATGCTGTTTACA
TAACTGTAATAGCTTAGAGGAAAAGTCTCTGCTATTTCACTCCCTTCTTG
TATCGCAGACTCCTTTCTTTGTTATCGCACCGGGTGATCTATCACTGACG
AGTTTCATTTCGCTTCACACCCGCTGTGATAACGAGAAGTTTCACAGTAG
TTTACACGATATTTTTCTCCTCTGTAAGCCATGTTTGATATTTGTCCAAT
GTGCATCACCGAGTAGTACTATTACGGTCGTGCGTTGTTAACGAATACTC
GGCACCGTTACGCCAATATATGGGTGCAGGAGACATTCTACAGCTTAAAA
GAACCGCATCGATGAGGTCGTCACAAAGTAAAAAAAAAAAACGAAAAAAA
ACTAATTCTGTGTGGAATTATCGCTTTATGCCCATGATTCTGGCCGTTAC
CCTTGGGCTGGCTCGAGGATAAAATATGAGCAAAAAATGCACTGTAGAAA
AGTCAATTGGGATGGGACAAACGATAGCTTGAAAGAACTGCATCACTGAG
GTCGTCATACAGGGGTGGGGAAATGTGTCGAATTATCCCTTAATGTCCAT
GATTCTGGCCATTACCCTTGGGCTGGCTCGAGGTAAAAATACCAGCGAAA
ATTGCACTGAAAAAATGTCAATTGTGATTGGAATGGGACAAACTATAGCT
TGAAAGAACCGCATAAATGAGGTCGTCACACGGGAAGAAACAAAAATGAA
TATACGTATATGTTCATGTTGCGTTATGCCATCAAGTTCGTCCGGTTCAC
CAGTACCTAGCCTGTTTCGGAGCAAAAAGATCTGCGAAATGGTACGGTAC
AGAGGGTAATTGTGATTGGAATGGGACAAAAAATCGCTTGAAAGAACAGT
ACCAATGCTGCCGTCACGTAAAAATGAAGGGGAACAAAAACCAATGCATT
AATGCTGAGTTAGGCCATAATGTTCGCCCATTTCGCCTTAAGGAAAAAGG
CTCTAGAGCGGGAAATTATGGTCAGTATTTAAGCAGACGATGGGTTCAAT
TAACCGAGCCAAGAATGCCGTAACATCAAAGAATGACACACCATTCAAGG
TTTTATTCTTGTTGAGATGTACACAATACTCTCCCAACTGTTCGCCGTCA
ACCGTAGCTCAAATTCAAGTAGGCAAAAACGAACCACGGGGCAATATCGT
CGGCTGGACAAAACACGCGGGTCCCGCAGACAGCAAACGAGGGTACACAC
CAACTGCGTGAATGAGACAGCCACATCCATACGGGCAGTGTTTGGCACAG
TAGCTGCCGCCAAGAAATGTCAGGACAGATCACACAAGAAAGAGGTCAAT
ATGATGGCCTACTATCACCTAACCGGCGCATCGCCGTCTGCATTAGCGCC
GAATCCAACAAAATCCATCAACTCCCCAGATAGCTCCTCAGCCACCTGGT
CCTCCATGTCGTCACCATCAACGCTACCCTTCCTACCAGAATCATCTGCG
CTGTAGTTGGAAACGTCAAGCTGACGCATATTACCAGATAGAACGGCGTC
ATTTTCTACCGAATGGTCCATGTCCTTAATGGCGTGCTCAACGAGTTTCC
CACAATTCGCAGGTTTCCAAGCCCCTTCTTGCCCTTCCCACTGCGCGTCC
CCATACCACCCCTTCCGAATCTTCTCCCAGACCTCAACCATTTTACGGCC
TGTCCTGTAGTTGAAGCTGACATACTGCTTACCGTGCTGCCAGAACAACT
CGATCGGCTGAAAAGTTGACGTGTCCAGGGGGGTCCAAATCAATTGCCAC
TCTCGTTCGTCCATGAACTTCACTTTCTCCTTCAGCCTTTCCAGGTATTT
CTCGTTGAAAAACACCTGAGTAGCAGCCTGTAACTCCTCGCTACTACTGA
TACCGCCCCCACCCGTCGAGTTCGCGTTCGGGAATGTTCCCGTATTTGGA
ACCTCGAAATTGTGCGACACGCCTGACCTCTTAACCATGATCTTCTTAGT
CTTTTACTTTTGCAACAGTGCTTGTTGTGTTGTAAGCCTTGGTATTAGTT
TCAGGCACGCGGATCTCTGGGTCATAGCCGTGGTGATACGACGCGTTGTC
GAGCACAATAATCATATTCTGATCGGGAAAAGCGACTCTGAATGCCGGCT
GAAGGCGCTGCTTTAGCCAGTCCTGGAACATCTTGTCGATCATGGCATCG
TGGTAATCCCCCGTGGATTTTTTTCCCTGCCAAAGCATATCTGCAGTGTT
CTTTGTGCCCATTGGCCCCTGTCCCTGCTTACCCTTCCCATTAGCACGTT
TTTTTAACCACCCCTCTTCGATAGGGTTTTGCCATCACCAAGACCTGCCA
ATGTCCCCTTTTTAGTGATTGCGTGAACCACGATCAGTCGCAAGCCCTTA
CCTGAGCTACGACCCATCCCATCCTGCACTAACTCGTTCTCATCCGTGAA
GTACGAATACGCAGACCCATGTAACTGGTGGACGAAACCCTCGTTCATGT
ACACTATTACATGCGATCCATCTTTCTCTTTAGAAAGCGCACCACCCATC
TCTACCAGAAACCGTCGAATACGTGCCTTTCTCTCATCGCTGAGAGGGGG
GGATTTTGATTCGTCCCCGGCGACGCCTATAGCCAAGCCTGTACAACAAG
TCTTCTACCAAACGGTTCGACATATTATGTTCGCACTCTCGCTCGATCCA
CTCGCCCACTGTCCGTCTGATGACTTGCCGCCCATTCTCATGCTTGTCGC
TAGTAAAGGCGCGCAGGTTCTTGCACTGATTGTCGTTGAGCACGGTCCGC
CCGTCCGATCTACTTCCCACGCCTCGTCCCTTCCCCGATGATGCCAATAA
GTCGTGGTTGTCGTTCCAGTGATTGCGAGCCTGTTCGGTTTCGAGAATAT
TTGAGGTTGGGACGCGAATATATTCTTGTTCGGAGACAATGTTGGTTTTG
AGAAGCGATTACATTTGACGGGCAGCAGTTATTTACTCTATAAACGGTCT
CAAGGTAAGCTTCAGTAGATCAAGCCCGCACACAACTCTGCAGACAGTAC
CAGGGTATGAAATTCGAATTGTGCACCATCCTGATCATAAGCATAGTATA
CATTTACACATAAAGTGTCAATGAAATGAAATCAAACACAGCAACCTGCG
CTTACTGTACACAACAGATGACATGAAGTGCATCACTTACGTTGCAGACC
TTGTTGATGCCCACGTCCTGGATCCTTGCAGTCTCTTTGACAGACTTGTC
CTCATCGGCACCCTTCTGCTCAAGTTCGAAGTAAGTCCAAAGGATATATC
TCGACTGAGATATGGTCAACAGCTCGCTCCAGTGCGTCAATTGAATGCGC
GCGGCCTCAGCCACATCGTATTGATCTCGAGGCACAGGTCTCCCCCTCCG
TTCCTTCTCCCGTAGCTCCACCGCGCCCTCACGGTCGGCAAGCGTTACCA
TGCCCTTGGCCAGCGCTGCCTGTAATTTGGTAAGCGTTGCCTTGCGTTTA
TTAGCAAGCTCTGCGGCGTCCGCTGCCTGGCGTTTGGCAAGTGCTGCCTC
CTCTTTGGCTAGTGCCGCCTTGTTGGCAGCGTGGGTACGCTCGCACGCAA
CCTCCCTGACCTCAACGACCCTCTCTCTTGCCTTGACCATCTTCATCAGG
TTTGCATGTTCAAGCTTGAAGTCTCTGTTCCGTCTCCCCTTCGGAACAGC
TCGCAGGTTGCCTGTTGTTTTGTGCTTGTTCGTCGGCATCTTGGCACAGC
GTTTGCGCGGCTGCGCCAGGTGCTCGTTTACCCGAGGTGCCCCTCTTCAA
AAGTGCGTACTGCCAAAATGCGTGGGCCCATTCAAAATATGGCTGGTGCG
TTCGAACCGTATGGTCCAGGGCTGTCTGTTGGAACTGGTTCTACAGTTTG
GTTCGCAAAAATAGCGTCTAACGAGTTGACCCACCGTAAAAAATGTTGTT
TTGAAGTGCTCACTTTTGTCTTGCGGTACCGCAACCTGTGTTTGCTTTCT
GAGTATAGGGCCGGCACCTGCCAAAAGCTACACTCGTGAGGTTTAATTTG
ACCTACCCAACTGCGCCATGGACATCTCGTGCTCTTATGATGGTGTCTGT
AGCTGGCTTTGAAGTTTCTAGTAGCGCACAAAAAAAGCATAAAACGTGTT
TTTCCTCAACTTTTTTTTTCATTTTTTTCCAGTTTTCTCAGTGTTTTTTT
TTGCACGAATTTACTCCTGAGTAGAATGCGCCACCGTAATACTTCTGAAG
TGCTAAATGACGCTGTGATAATGTTGTCCTCTCATGACCTGCACCCGTAA
GTACTTGCTGTGGTGTCTTCTTACATTGCCACGGAGCACGAATCTCAATT
ATCCCCATATTTGCCAACACAAACACACACACACACATCCAGCGCATATG
GATTCCCTTCCACAACACTCCTCGCTCGACCCTAGGTTAGCTGCGTCCAA
GACTCGCAGAGCTATGCCAAAACCCTCGCTGCTCTCTCGATGACCGAGGT
AGACGAGATCTTACTGCATGACGGGGCACGTGGCCGAGTGCTGTCATTGA
AGATCGTGGGGGCGTTTCATGGAGAAACCTCGAGGTCAAGGGTACTCTTC
GTCTCTAGACAATACTTCGATCAAGACAAGGTGTGCTTGAGTTTGATGCT
GCTGATCGAGACTATTCCGATGTATTCAGGCCTTGGTCGCGCCAGTCAGG
AGTACGAGAGTATCAGACCGACTTGCAGCACAATACAACACCGCGGTCCT
TTCTATAATGGGTGTAGCACATCACTTCGGCGCACTGACGGAGGATCCCC
CTATTTTAACCCGAGGTCTAATGAATATTTTTTAATCGAAATTGAGAGTG
TTCAACTTTAGAGTCGTTTTTTTTGGCGATTTGGGGTGAACAACTCGATA
ATTCGACCTGGGAACCCTAGACAAAAAACGGCCACGCCGAGCTGGCAGTC
AATGTGATATATCCTACATCCGAATCAAACAACGTTGGGATTCGAGGTTG
GACTAATGGAGGAAAGTGATTCAATCAATGCCAGTGTACAGGAAATAATG
GTTTACAGTGATATCTCTGGATGTGTTGTGCTCATTTATTTATTTTTCTT
TGATGAGGATTGAATTCACAAGAAATGCGAGCTTACAAAAAAAAAAATCC
TGACTGCCGAATCTTTGCTCTAAAAATCGCCCAAACCTACCCACTCTCAA
TCTGAACAGTCACTCTCAATTTAACTAAATGTTGTTGTATGCGATCCACG
ATTCAACCCCCCAACACAAACAAGTTTTCTAACAGAAATCCCCACACAGG
CCAGGGAGGTACACTCCATAAACGCAGCGTTTGGGTCCATCTACAACCAA
AGAATAACCGATGTACCAGTCCCAAGTGAGAAGGATGCCAGGTCGAACAC
AGGTAGAGTCTTCACCATATTTTATCTATCTGCACATTTCATGTTTGCGC
ATCCGTCGGTATTCGTGCGGTTGTTCGAGCAAGCAGCGAGGCTACAGTCC
ACAAGATAGACTAGAGCGTGCTGCCGCCGCCTTCTTGACAAGCCCTTTCT
CAATATTCTAAGCAGGCATTTGACGATAAAACATTGCGAATCTCACGCGA
CACAGGGGGCGGAATTGCTGAAGCGCCTGGCGTCCGGCTCTGTAGATGCA
GAGATGGTGTCCAAGTACACCGCTCTGGCCGCGTCCTACTGCCTCCTCAG
ATACATCGAGAACAACACCGGACATGCCTTTGCCAACGGAAGGTCGGTTG
CATGTGTCGAGGCTATGAATCCAAAAGCTAGAAGTGAGGGTTCAGGTGTT
ACCTCCGCTCCTGTGGCGGGCTAGTTGTGGGGCACATCTATGGGTCTTAT
GTTGATAGGCGGTTTCTCCCTATCTACGGTCTCCAAT back to topCoding sequence (CDS) from alignment at H-paniculata_contig3257:3422..9908- >mRNA_H-paniculata_contig3257.8758.1 ID=mRNA_H-paniculata_contig3257.8758.1|Name=mRNA_H-paniculata_contig3257.8758.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=786bp|location=Sequence derived from alignment at H-paniculata_contig3257:3422..9908- (Halopteris paniculata Hal_grac_a_UBK monoicous) ATGGCATGTCCTCCACCTCCATCGAAGAAAAAGAAGTTCAGTGATGCTGG TGCTGCTGCTCGGGGCTGTGGGAGCAATAGCAATGCTTCGTTCAAGGTCT GCGCTATTGTGGAGAATCGTGCGAGGGAAACGTGCATCGCCACAATAGAC ACAGCCCACTCTTCAGTGCTACAGATGGCATGTCCTCCACCTCCATCGAA GAAAAAGAAGTTCAGTGATGCTGGTGCTGCTGCTCGGGGCTGTGGGAGCA ATAGCAATGCTTCGTTCAAGGTCTGCGCTATTGTGGAGAATCGTGCGAGG GAAACGTGCATCGCCACAATAGACACAGCCCACTCTTCAGTGCTACAGGG GGCGGAATTGCTGAAGCGCCTGGCGTCCGGCTCTGTAGATGCAGAGATGG TGTCCAAGTACACCGCTCTGGCCGCGTCCTACTGCCTCCTCAGATACATC GAGAACAACACCGGACATGCCTTTGCCAACGGAAGGTCGGTTGCATGTGT CGAGGCTATGAATCCAAAAGCTAGAAGTGAGGGTTCAGGTGTTACCTCCG CTCCTGTGGCGGGCTAGGGGGCGGAATTGCTGAAGCGCCTGGCGTCCGGC TCTGTAGATGCAGAGATGGTGTCCAAGTACACCGCTCTGGCCGCGTCCTA CTGCCTCCTCAGATACATCGAGAACAACACCGGACATGCCTTTGCCAACG GAAGGTCGGTTGCATGTGTCGAGGCTATGAATCCAAAAGCTAGAAGTGAG GGTTCAGGTGTTACCTCCGCTCCTGTGGCGGGCTAG back to top
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