mRNA_H-paniculata_contig32218.8677.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A2N9FGB3_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FGB3_FAGSY) HSP 1 Score: 146 bits (369), Expect = 2.890e-36 Identity = 93/267 (34.83%), Postives = 149/267 (55.81%), Query Frame = 1
Query: 1 VSDPCVYTKGSRQSYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTRNKIQKPSIR----KVMQQTADDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYASCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQ-LSKD-KVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQLDP 783
+ D C+Y K S L L+VDDIL+ LL V L K F + D+G S +G+++ R++ Q P ++ + Q +D + + Y + VGSL++ CTR +I ++V R+ S P + G ++R KST+G + +ASG V + S+ Q +TATS+ AE V+ G++L + + L M +S+ ++ CDN A+ +A N SRSKHI I++ A+RE IK K++VI HVS++ ++D LTK + P
Sbjct: 656 IMDQCIYQKVSGSKIYFLVLYVDDILLATNDNGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQAPIVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPNIAFAVGMLGRYQSDPDSDFAGCIDSR-KSTSGYIFLMASGAVSWRSAKQTLTATSTMEAEFVSCFEATSHGVWLKSFISGLRIMDSISRPLRIYCDNSVAIFMAKNNKSGSRSKHIDIKYLAIRERIKEKKVVIEHVSTELMIADPLTKGMPP 921
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE) HSP 1 Score: 145 bits (367), Expect = 5.060e-36 Identity = 103/290 (35.52%), Postives = 147/290 (50.69%), Query Frame = 1
Query: 4 SDPCVYTKGSRQSYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTRNK-------IQKPSIRKVMQQTA-------DDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYASCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITA-------------TSSTG----AELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQLD 780
SDPCVY GS + ++LTL+V+DILI+G L+ + +L +F ITD+G V L LGM+VTR+ QK ++ +++ D L K YQ+I GSL++L QC R+D Y+V+Q R SKP T K + L+ F R+ A S+TG +EL A+ K+ YLS+LLM L L + D+ G L LA+N SR+KHIA+RF L+E IK + + + HV +Q L+D+ TK LD
Sbjct: 558 SDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNPPADELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKP----ARAHTTAAKHALRYIRGTPDLLIIFKRGRFRVAAFADSSFGAIPDNRKSTTGLQVESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLD 843
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 145 bits (365), Expect = 7.290e-36 Identity = 100/321 (31.15%), Postives = 149/321 (46.42%), Query Frame = 1
Query: 4 SDPCVYTKGSRQSYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTRNK-------IQKPSIRKVMQ---------------------QTADDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYA-----------------------------------SCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQL 777
SDPCVY S +L ++VDDILITG ++ ++ +LM F +TD+G V +G+EV R+ Q P R ++Q + D L + +++QAI GSL++L QCTR+D+ Y+V Q R + P S G +STTG + FL GL+ + + Q + A ++ AEL AL ++ +Y+SN + E+G + D+ GAL +ASNA SR+KHIA+RF LRE K R+ + H S L+D+ TK L
Sbjct: 397 SDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHL 717
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE) HSP 1 Score: 138 bits (348), Expect = 2.710e-34 Identity = 94/323 (29.10%), Postives = 152/323 (47.06%), Query Frame = 1
Query: 4 SDPCVYTKGSRQSYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTRNKIQKPSIRKVMQQTADDTQLNEQGIKQ------------------------------YQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYA-----------------------------------SCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQL 777
SDPCVY S ++LT++VDDILITG + L+ +L +F +TD+G V LG++V R+ Q + Q+ +T+L G+++ YQ++ GS+++L QCT+FD+ Y+ Q ++ S P S G +STTG + FLA GL+ + + Q +TA S+ AE+ AL ++ +Y+SN + EL + D+ GAL +A NA R+KH+A+R+ +RE + ++ + H S+HQL+D+ TK L
Sbjct: 156 SDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLA--ISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYL 476
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE) HSP 1 Score: 140 bits (353), Expect = 2.780e-34 Identity = 95/321 (29.60%), Postives = 147/321 (45.79%), Query Frame = 1
Query: 4 SDPCVYTKGSRQSYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTR---------------------------NKIQKPSI-RKVMQQTADDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYA-----------------------------------SCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQL 777
SDPCVY S ++LT++VDDILITG + L+ +L +F +TD+G V LG++V R N + P ++ D L K YQ++ GS+++L QCTRFD+ Y+ Q ++ S P S G +STTG + FLA GL+ + + Q +TA S+ AE+ AL ++ +Y+SN + EL + D+ GAL +A NA R+KH+A+R+ +RE + ++ + H S+HQL+D+ TK L
Sbjct: 364 SDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYL 684
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE) HSP 1 Score: 139 bits (349), Expect = 1.300e-33 Identity = 94/321 (29.28%), Postives = 146/321 (45.48%), Query Frame = 1
Query: 4 SDPCVYTKGSRQSYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTR---------------------------NKIQKPSI-RKVMQQTADDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYA-----------------------------------SCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQL 777
SDPCVY S ++LT++VDDILITG + L+ +L +F +TD+G V LG++V R N + P ++ D L K YQ++ GS+++L QCTRFD+ Y+ Q ++ S P S G +STTG + FLA GL+ + + Q +TA S+ AE+ AL ++ +Y+SN + EL + D+ GAL +A NA R+KH+ +R+ +RE + ++ + H S+HQL+D+ TK L
Sbjct: 520 SDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYL 840
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A2N9F319_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F319_FAGSY) HSP 1 Score: 135 bits (340), Expect = 2.480e-32 Identity = 93/292 (31.85%), Postives = 154/292 (52.74%), Query Frame = 1
Query: 4 SDPCVYTKGSRQ-SYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTRNK-------IQKPSIRKVMQQ------------------------TADDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYASCGGTEET-RTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQLD 780
SDPCVY K ++I+L L+VDD+L+ GP++ + + L ++F + DLG + LGM++ R++ QK ++K++++ +++ + E Y + VGSL+F CTR DI +V + F + Y + ++KST+G + LA G V + S LQ I ATS+T AE VA K+ I+L LL ELG Q K + CD++ ALHLA N S++KHI +++ +RE ++ + I + ++ L+D+LTK ++
Sbjct: 973 SDPCVYYKRFGDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPTPLPINFKLSSSMSPSNEAERMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGSGSDFTVRGYVDSDYAGDLDKSKSTSGYVFTLAGGAVSWVSKLQSIVATSTTEAEYVAATQASKEAIWLQMLLEELGHKQ-EKIALFCDSQSALHLAKNPAFHSKTKHIRVQYHFVREKVEEGSVDIQKIHTKDNLADMLTKPIN 1263
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A2N9IBB7_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IBB7_FAGSY) HSP 1 Score: 134 bits (338), Expect = 4.140e-32 Identity = 95/300 (31.67%), Postives = 157/300 (52.33%), Query Frame = 1
Query: 4 SDPCVYTKGSRQ-SYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTRNK-------IQKPSIRKVMQQ------------------------TADDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYA---------SCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQLD 780
SDPCVY K ++I+L L+VDD+L+ GP++ + + L ++F + DLG + LGM++ R++ QK ++K++++ +++ + E Y + VGSL+F CTR DI +V +R+M P + S + ++KST+G + LA G V + S LQ I ATS+T AE VA K+ I+L LL ELG Q K + CD++ ALHLA N S++KHI +++ +RE ++ + I + ++ L+D+LTK ++
Sbjct: 818 SDPCVYYKRFGDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPTPLPINFKLSSSMSPSNEAERMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGVVSRYMVNPGSDFTVRGYVDSDYAGDLDKSKSTSGYVFTLAGGAVSWVSKLQSIVATSTTEAEYVAATQASKEAIWLQMLLEELGHKQ-EKIALFCDSQSALHLAKNPAFHSKTKHIRVQYHFVREKVEEGSVDIQKIHTKDNLADMLTKPIN 1116
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE) HSP 1 Score: 129 bits (324), Expect = 1.230e-31 Identity = 92/321 (28.66%), Postives = 145/321 (45.17%), Query Frame = 1
Query: 4 SDPCVYTKGSRQSYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTR---------------------------NKIQKPSI-RKVMQQTADDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYA-----------------------------------SCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQL 777
SDPCVY + ++LT++VDDILITG + L+ +L +F +TD+G V LG+ V R N + P ++ D L K YQ++ GS+++L QCTRFD+ Y+ Q ++ S P S G +STTG + FLA GL+ + + Q +TA S+ AE+ AL ++ +Y+SN + EL + D+ GAL +A NA + S+ ++A+R +RE + ++ + H S+HQL+D+ TK L
Sbjct: 37 SDPCVYVYTTGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNA-MHSQRTNVALRCFFIRELVLRGQITLHHRPSEHQLADIATKYL 356
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A438ES44_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438ES44_VITVI) HSP 1 Score: 131 bits (330), Expect = 4.750e-31 Identity = 88/261 (33.72%), Postives = 142/261 (54.41%), Query Frame = 1
Query: 10 PCVYTKGSRQSYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTRNKIQKPSIRKVMQQTA-DDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYASCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQ-LSKD-KVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQLDP 783
P V GS+ + L L+VDDIL+ + LL V L K F + D+G S +G+++ R++ + R + Q +D ++ + Y VGSL++ CTR DI ++V R+ S P + G ++R KST G + LA G + + S Q +TATS+ AE ++ G++L + + L M +S+ + CDN A+ +A N SRSKHI I++ A+RE +K K++VI H+S++ + D LTK + P
Sbjct: 794 PLVMVSGSKVCF--LVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKVKGDRFNLNQCPKNDLEMEQMKNIPYAYAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPDSDFAGCVDSR-KSTFGYIFILAGGAISWRSVKQTMTATSTMEAEFISCFEAISHGVWLKSFIYGLRVMDSISRPLSIYCDNSAAVFMAKNNKSGSRSKHINIKYLAIRERVKEKKVVIKHISTELMIVDPLTKGMPP 1051 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig32218.8677.1 >prot_H-paniculata_contig32218.8677.1 ID=prot_H-paniculata_contig32218.8677.1|Name=mRNA_H-paniculata_contig32218.8677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp MLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTRNKback to top mRNA from alignment at H-paniculata_contig32218:1163..2132- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig32218.8677.1 ID=mRNA_H-paniculata_contig32218.8677.1|Name=mRNA_H-paniculata_contig32218.8677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=970bp|location=Sequence derived from alignment at H-paniculata_contig32218:1163..2132- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig32218:1163..2132- >mRNA_H-paniculata_contig32218.8677.1 ID=mRNA_H-paniculata_contig32218.8677.1|Name=mRNA_H-paniculata_contig32218.8677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig32218:1163..2132- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |