mRNA_H-paniculata_contig32218.8677.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig32218.8677.1
Unique NamemRNA_H-paniculata_contig32218.8677.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A2N9FGB3_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9FGB3_FAGSY)

HSP 1 Score: 146 bits (369), Expect = 2.890e-36
Identity = 93/267 (34.83%), Postives = 149/267 (55.81%), Query Frame = 1
Query:    1 VSDPCVYTKGSRQSYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTRNKIQKPSIR----KVMQQTADDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYASCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQ-LSKD-KVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQLDP 783
            + D C+Y K S      L L+VDDIL+      LL  V   L K F + D+G  S  +G+++ R++ Q P ++     + Q   +D +  +     Y + VGSL++   CTR +I ++V    R+ S P +   G  ++R KST+G +  +ASG V + S+ Q +TATS+  AE V+       G++L + +  L  M  +S+  ++ CDN  A+ +A N    SRSKHI I++ A+RE IK K++VI HVS++  ++D LTK + P
Sbjct:  656 IMDQCIYQKVSGSKIYFLVLYVDDILLATNDNGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFQAPIVKGDRFNLNQCPKNDLEREQMKNIPYASAVGSLMYAQVCTRPNIAFAVGMLGRYQSDPDSDFAGCIDSR-KSTSGYIFLMASGAVSWRSAKQTLTATSTMEAEFVSCFEATSHGVWLKSFISGLRIMDSISRPLRIYCDNSVAIFMAKNNKSGSRSKHIDIKYLAIRERIKEKKVVIEHVSTELMIADPLTKGMPP 921          
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A6H5K9R3_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9R3_9PHAE)

HSP 1 Score: 145 bits (367), Expect = 5.060e-36
Identity = 103/290 (35.52%), Postives = 147/290 (50.69%), Query Frame = 1
Query:    4 SDPCVYTKGSRQSYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTRNK-------IQKPSIRKVMQQTA-------DDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYASCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITA-------------TSSTG----AELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQLD 780
            SDPCVY  GS  + ++LTL+V+DILI+G    L+  +  +L  +F ITD+G V L LGM+VTR+         QK  ++ +++           D  L     K YQ+I GSL++L QC R+D  Y+V+Q  R  SKP         T  K     +      L+ F     R+ A              S+TG    +EL A+    K+  YLS+LLM L    L    +  D+ G L LA+N    SR+KHIA+RF  L+E IK + + + HV +Q  L+D+ TK LD
Sbjct:  558 SDPCVYIHGSGDTLVILTLYVNDILISGKDPDLVADLKKELQDRFEITDIGEVRLILGMKVTRSYENGTLVVSQKGYVKSILESLGMENCNPPADELLGAAESKLYQSITGSLLYLAQCKRYDQSYAVNQLTRACSKP----ARAHTTAAKHALRYIRGTPDLLIIFKRGRFRVAAFADSSFGAIPDNRKSTTGLQVESELQAISYGAKEAAYLSSLLMALKFENLKPISIYSDSSGTLSLAANTMFSSRTKHIALRFFVLQESIKPRHIAVHHVPTQAMLADIATKHLD 843          
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 7.290e-36
Identity = 100/321 (31.15%), Postives = 149/321 (46.42%), Query Frame = 1
Query:    4 SDPCVYTKGSRQSYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTRNK-------IQKPSIRKVMQ---------------------QTADDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYA-----------------------------------SCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQL 777
            SDPCVY   S     +L ++VDDILITG ++ ++     +LM  F +TD+G V   +G+EV R+         Q P  R ++Q                     +   D  L  +  +++QAI GSL++L QCTR+D+ Y+V Q  R  + P                                     S  G      +STTG + FL  GL+ + +  Q + A ++  AEL AL    ++ +Y+SN + E+G        +  D+ GAL +ASNA   SR+KHIA+RF  LRE  K  R+ + H  S   L+D+ TK L
Sbjct:  397 SDPCVYIFVSGDELTILAIYVDDILITGGNKEIVSRKKKELMDSFEMTDMGEVKRVIGIEVQRDYEHGTLAISQGPYARDILQRYGMEQANPVSTPGYGVELSTEQPQDQLLGPEDKQRFQAITGSLLYLAQCTRYDLSYAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHL 717          
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A6H5KQD0_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQD0_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 2.710e-34
Identity = 94/323 (29.10%), Postives = 152/323 (47.06%), Query Frame = 1
Query:    4 SDPCVYTKGSRQSYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTRNKIQKPSIRKVMQQTADDTQLNEQGIKQ------------------------------YQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYA-----------------------------------SCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQL 777
            SDPCVY   S    ++LT++VDDILITG  + L+     +L  +F +TD+G V   LG++V R+  Q      + Q+   +T+L   G+++                              YQ++ GS+++L QCT+FD+ Y+  Q ++  S P                                     S  G      +STTG + FLA GL+ + +  Q +TA S+  AE+ AL    ++ +Y+SN + EL         +  D+ GAL +A NA    R+KH+A+R+  +RE +   ++ + H  S+HQL+D+ TK L
Sbjct:  156 SDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLA--ISQEHYVNTRLERFGMQEANPVSTLGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTQFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYL 476          
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A6H5JF89_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF89_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 2.780e-34
Identity = 95/321 (29.60%), Postives = 147/321 (45.79%), Query Frame = 1
Query:    4 SDPCVYTKGSRQSYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTR---------------------------NKIQKPSI-RKVMQQTADDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYA-----------------------------------SCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQL 777
            SDPCVY   S    ++LT++VDDILITG  + L+     +L  +F +TD+G V   LG++V R                           N +  P    ++      D  L     K YQ++ GS+++L QCTRFD+ Y+  Q ++  S P                                     S  G      +STTG + FLA GL+ + +  Q +TA S+  AE+ AL    ++ +Y+SN + EL         +  D+ GAL +A NA    R+KH+A+R+  +RE +   ++ + H  S+HQL+D+ TK L
Sbjct:  364 SDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMAGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVALRYFFIRELVLRGQITLHHRPSEHQLADIATKYL 684          
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A6H5KE92_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE92_9PHAE)

HSP 1 Score: 139 bits (349), Expect = 1.300e-33
Identity = 94/321 (29.28%), Postives = 146/321 (45.48%), Query Frame = 1
Query:    4 SDPCVYTKGSRQSYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTR---------------------------NKIQKPSI-RKVMQQTADDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYA-----------------------------------SCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQL 777
            SDPCVY   S    ++LT++VDDILITG  + L+     +L  +F +TD+G V   LG++V R                           N +  P    ++      D  L     K YQ++ GS+++L QCTRFD+ Y+  Q ++  S P                                     S  G      +STTG + FLA GL+ + +  Q +TA S+  AE+ AL    ++ +Y+SN + EL         +  D+ GAL +A NA    R+KH+ +R+  +RE +   ++ + H  S+HQL+D+ TK L
Sbjct:  520 SDPCVYVYTSGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIDVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTDKKIYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPVLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNAMHSQRTKHVTLRYFFIRELVLRGQITLHHRPSEHQLADIATKYL 840          
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A2N9F319_FAGSY (Uncharacterized protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9F319_FAGSY)

HSP 1 Score: 135 bits (340), Expect = 2.480e-32
Identity = 93/292 (31.85%), Postives = 154/292 (52.74%), Query Frame = 1
Query:    4 SDPCVYTKGSRQ-SYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTRNK-------IQKPSIRKVMQQ------------------------TADDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYASCGGTEET-RTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQLD 780
            SDPCVY K     ++I+L L+VDD+L+ GP++  +  +   L ++F + DLG  +  LGM++ R++        QK  ++K++++                         +++ +  E     Y + VGSL+F   CTR DI  +V   + F  + Y       +  ++KST+G +  LA G V + S LQ I ATS+T AE VA     K+ I+L  LL ELG  Q  K  + CD++ ALHLA N    S++KHI +++  +RE ++   + I  + ++  L+D+LTK ++
Sbjct:  973 SDPCVYYKRFGDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPTPLPINFKLSSSMSPSNEAERMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGSGSDFTVRGYVDSDYAGDLDKSKSTSGYVFTLAGGAVSWVSKLQSIVATSTTEAEYVAATQASKEAIWLQMLLEELGHKQ-EKIALFCDSQSALHLAKNPAFHSKTKHIRVQYHFVREKVEEGSVDIQKIHTKDNLADMLTKPIN 1263          
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A2N9IBB7_FAGSY (Integrase catalytic domain-containing protein n=2 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9IBB7_FAGSY)

HSP 1 Score: 134 bits (338), Expect = 4.140e-32
Identity = 95/300 (31.67%), Postives = 157/300 (52.33%), Query Frame = 1
Query:    4 SDPCVYTKGSRQ-SYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTRNK-------IQKPSIRKVMQQ------------------------TADDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYA---------SCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQLD 780
            SDPCVY K     ++I+L L+VDD+L+ GP++  +  +   L ++F + DLG  +  LGM++ R++        QK  ++K++++                         +++ +  E     Y + VGSL+F   CTR DI  +V   +R+M  P +         S    +  ++KST+G +  LA G V + S LQ I ATS+T AE VA     K+ I+L  LL ELG  Q  K  + CD++ ALHLA N    S++KHI +++  +RE ++   + I  + ++  L+D+LTK ++
Sbjct:  818 SDPCVYYKRFGDGNFIILLLYVDDMLVAGPNKDRITDLKAQLAREFEMKDLGPANKILGMQIYRDRNNRKIWLSQKNYLKKILRRFNMQDCKPIPTPLPINFKLSSSMSPSNEAERMEMSRVPYASAVGSLMFAMVCTRPDIAQAVGVVSRYMVNPGSDFTVRGYVDSDYAGDLDKSKSTSGYVFTLAGGAVSWVSKLQSIVATSTTEAEYVAATQASKEAIWLQMLLEELGHKQ-EKIALFCDSQSALHLAKNPAFHSKTKHIRVQYHFVREKVEEGSVDIQKIHTKDNLADMLTKPIN 1116          
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A6H5KUJ3_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUJ3_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.230e-31
Identity = 92/321 (28.66%), Postives = 145/321 (45.17%), Query Frame = 1
Query:    4 SDPCVYTKGSRQSYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTR---------------------------NKIQKPSI-RKVMQQTADDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYA-----------------------------------SCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQL 777
            SDPCVY   +    ++LT++VDDILITG  + L+     +L  +F +TD+G V   LG+ V R                           N +  P    ++      D  L     K YQ++ GS+++L QCTRFD+ Y+  Q ++  S P                                     S  G      +STTG + FLA GL+ + +  Q +TA S+  AE+ AL    ++ +Y+SN + EL         +  D+ GAL +A NA + S+  ++A+R   +RE +   ++ + H  S+HQL+D+ TK L
Sbjct:   37 SDPCVYVYTTGNIIVILTVYVDDILITGGDQQLVDQKKKELTDRFEMTDMGEVKRILGIGVQRDYEQGTLAISQEHYVNTLLERFGMQEANPVSTPGYGAEISTNQPQDQILGPTEKKNYQSMTGSILYLAQCTRFDLSYAALQLSKACSNPAQVNMTAAKHVLRYLRGNPGLPIVYKRGQFRLAAFTDSSFGANPDNGRSTTGYLFFLAGGLISYGAKTQTLTAQSTVEAEIQALSYSAREAVYISNFMTELNFKTFGSVPINSDSTGALTVAGNA-MHSQRTNVALRCFFIRELVLRGQITLHHRPSEHQLADIATKYL 356          
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Match: A0A438ES44_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438ES44_VITVI)

HSP 1 Score: 131 bits (330), Expect = 4.750e-31
Identity = 88/261 (33.72%), Postives = 142/261 (54.41%), Query Frame = 1
Query:   10 PCVYTKGSRQSYIMLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTRNKIQKPSIRKVMQQTA-DDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVSQAARFMSKPYASCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSSTGAELVALPTCEKQGIYLSNLLMELGRMQ-LSKD-KVLCDNKGALHLASNANLRSRSKHIAIRFAALRE*IKNKRLVIGHVSSQHQLSDVLTKQLDP 783
            P V   GS+  +  L L+VDDIL+    + LL  V   L K F + D+G  S  +G+++ R++ +    R  + Q   +D ++ +     Y   VGSL++   CTR DI ++V    R+ S P +   G  ++R KST G +  LA G + + S  Q +TATS+  AE ++       G++L + +  L  M  +S+   + CDN  A+ +A N    SRSKHI I++ A+RE +K K++VI H+S++  + D LTK + P
Sbjct:  794 PLVMVSGSKVCF--LVLYVDDILLATNDKGLLHEVKQFLSKNFDMKDMGEASYVIGIKIHRDRFKVKGDRFNLNQCPKNDLEMEQMKNIPYAYAVGSLMYAQVCTRPDIAFAVGMLGRYQSNPDSDFAGCVDSR-KSTFGYIFILAGGAISWRSVKQTMTATSTMEAEFISCFEAISHGVWLKSFIYGLRVMDSISRPLSIYCDNSAAVFMAKNNKSGSRSKHINIKYLAIRERVKEKKVVIKHISTELMIVDPLTKGMPP 1051          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig32218.8677.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2N9FGB3_FAGSY2.890e-3634.83Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A6H5K9R3_9PHAE5.060e-3635.52Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JF46_9PHAE7.290e-3631.15Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KQD0_9PHAE2.710e-3429.10Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JF89_9PHAE2.780e-3429.60Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5KE92_9PHAE1.300e-3329.28Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9F319_FAGSY2.480e-3231.85Uncharacterized protein n=1 Tax=Fagus sylvatica Ta... [more]
A0A2N9IBB7_FAGSY4.140e-3231.67Integrase catalytic domain-containing protein n=2 ... [more]
A0A6H5KUJ3_9PHAE1.230e-3128.66Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438ES44_VITVI4.750e-3133.72Retrovirus-related Pol polyprotein from transposon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig32218contigH-paniculata_contig32218:1163..2132 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeFungi
Seed ortholog score101.7
Seed ortholog evalue4.5e-19
Seed eggNOG ortholog5217.XP_007002292.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs38DPC@33154,3NUZ7@4751,3UY7N@5204,3VFTM@5234,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelTremellales
Best eggNOG OGNA|NA|NA
Exons3
Model size783
Cds size654
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig32218.8677.1prot_H-paniculata_contig32218.8677.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig32218 1244..2084 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929994.672308-UTR-H-paniculata_contig32218:1162..12431622929994.672308-UTR-H-paniculata_contig32218:1162..1243Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32218 1163..1243 -
1691481102.5688906-UTR-H-paniculata_contig32218:1162..12431691481102.5688906-UTR-H-paniculata_contig32218:1162..1243Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32218 1163..1243 -
1622929994.7327123-UTR-H-paniculata_contig32218:2084..21321622929994.7327123-UTR-H-paniculata_contig32218:2084..2132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32218 2085..2132 -
1691481102.6069942-UTR-H-paniculata_contig32218:2084..21321691481102.6069942-UTR-H-paniculata_contig32218:2084..2132Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig32218 2085..2132 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929994.683772-CDS-H-paniculata_contig32218:1243..15691622929994.683772-CDS-H-paniculata_contig32218:1243..1569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32218 1244..1569 -
1691481102.5808094-CDS-H-paniculata_contig32218:1243..15691691481102.5808094-CDS-H-paniculata_contig32218:1243..1569Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32218 1244..1569 -
1622929994.6981223-CDS-H-paniculata_contig32218:1677..18531622929994.6981223-CDS-H-paniculata_contig32218:1677..1853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32218 1678..1853 -
1691481102.5894897-CDS-H-paniculata_contig32218:1677..18531691481102.5894897-CDS-H-paniculata_contig32218:1677..1853Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32218 1678..1853 -
1622929994.7171428-CDS-H-paniculata_contig32218:1932..20841622929994.7171428-CDS-H-paniculata_contig32218:1932..2084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32218 1933..2084 -
1691481102.5989904-CDS-H-paniculata_contig32218:1932..20841691481102.5989904-CDS-H-paniculata_contig32218:1932..2084Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig32218 1933..2084 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig32218.8677.1

>prot_H-paniculata_contig32218.8677.1 ID=prot_H-paniculata_contig32218.8677.1|Name=mRNA_H-paniculata_contig32218.8677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=218bp
MLTLFVDDILITGPSETLLIGVHNDLMKKFYITDLGNVSLRLGMEVTRNK
IQKPSIRKVMQQTADDTQLNEQGIKQYQAIVGSLIFLTQCTRFDICYSVS
QAARFMSKPYASCGGTEETRTKSTTGSMLFLASGLVHFSSSLQRITATSS
TGAELVALPTCEKQGIYLSNLLMELGRMQLSKDKVLCDNKGALHLASNAN
LRSRSKHIAIRFAALRE*
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mRNA from alignment at H-paniculata_contig32218:1163..2132-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig32218.8677.1 ID=mRNA_H-paniculata_contig32218.8677.1|Name=mRNA_H-paniculata_contig32218.8677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=970bp|location=Sequence derived from alignment at H-paniculata_contig32218:1163..2132- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTCAGATCCTTGCGTTTACACAAAAGGCAGCCGCCAGAGCTATATAAT GCTCACGCTCTTCGTTGACGACATTCTCATCACCGGACCTTCGGAGACAC TACTGATTGGGGTACACAACGACTTGATGAAGAAATTTTACATCACTGAC TTAGGAAACGTCTCACTAAGACTGGGCATGGAGGTAACTCGCAACAAGAT GTCTGGTACGCTGGAGCTATCTCAACACAAGTACGTACTTTCTATTCTGA CACGATTGGAATGGAAGAGGCTAATCCAGCCAAAAGCCCAGCATCAGGAA GGTTATGCAGCAAACCGCTGACGACACCCAGCTGAACGAGCAAGGAATCA AACAGTATCAAGCTATCGTGGGGAGCCTCATCTTCCTCACTCAATGCACA CGGTTTGACATCTGCTATAGCGTGAGCCAAGCAGCTCGCTTCATGAGCAA GCCTTGTCAGGACACCATGATCGCGGTGAAGAGGATTTTACGGTACCTAC GGCGGCAATCAGATCTGCCGATCAAATACCGCAAAAGCAATTTTGAGCTA GTGGGCTGCTCAGACGCCTCTTGTGGAGGAACAGAGGAGACACGAACAAA GTCGACTACCGGTTCAATGCTCTTCTTGGCAAGTGGACTGGTACACTTCT CTTCAAGCCTTCAACGCATCACAGCAACCTCGAGCACTGGGGCAGAGCTA GTGGCATTACCTACCTGTGAGAAGCAGGGTATTTACCTGTCAAATTTGCT GATGGAGCTTGGACGGATGCAGCTCTCCAAAGATAAAGTGCTCTGCGACA ATAAGGGTGCTCTGCACCTAGCCAGCAACGCAAACTTACGCTCGCGTAGC AAACACATCGCCATCCGCTTTGCAGCTCTCCGGGAATGAATCAAGAACAA GAGGCTTGTTATCGGCCACGTCTCCTCACAGCACCAACTGAGCGATGTCC TCACCAAGCAGCTGGACCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig32218:1163..2132-

>mRNA_H-paniculata_contig32218.8677.1 ID=mRNA_H-paniculata_contig32218.8677.1|Name=mRNA_H-paniculata_contig32218.8677.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1308bp|location=Sequence derived from alignment at H-paniculata_contig32218:1163..2132- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTCACGCTCTTCGTTGACGACATTCTCATCACCGGACCTTCGGAGAC
ACTACTGATTGGGGTACACAACGACTTGATGAAGAAATTTTACATCACTG
ACTTAGGAAACGTCTCACTAAGACTGGGCATGGAGGTAACTCGCAACAAG
ATATGCTCACGCTCTTCGTTGACGACATTCTCATCACCGGACCTTCGGAG
ACACTACTGATTGGGGTACACAACGACTTGATGAAGAAATTTTACATCAC
TGACTTAGGAAACGTCTCACTAAGACTGGGCATGGAGGTAACTCGCAACA
AGATCCAAAAGCCCAGCATCAGGAAGGTTATGCAGCAAACCGCTGACGAC
ACCCAGCTGAACGAGCAAGGAATCAAACAGTATCAAGCTATCGTGGGGAG
CCTCATCTTCCTCACTCAATGCACACGGTTTGACATCTGCTATAGCGTGA
GCCAAGCAGCTCGCTTCATGAGCAAGCCTTCCAAAAGCCCAGCATCAGGA
AGGTTATGCAGCAAACCGCTGACGACACCCAGCTGAACGAGCAAGGAATC
AAACAGTATCAAGCTATCGTGGGGAGCCTCATCTTCCTCACTCAATGCAC
ACGGTTTGACATCTGCTATAGCGTGAGCCAAGCAGCTCGCTTCATGAGCA
AGCCTTACGCCTCTTGTGGAGGAACAGAGGAGACACGAACAAAGTCGACT
ACCGGTTCAATGCTCTTCTTGGCAAGTGGACTGGTACACTTCTCTTCAAG
CCTTCAACGCATCACAGCAACCTCGAGCACTGGGGCAGAGCTAGTGGCAT
TACCTACCTGTGAGAAGCAGGGTATTTACCTGTCAAATTTGCTGATGGAG
CTTGGACGGATGCAGCTCTCCAAAGATAAAGTGCTCTGCGACAATAAGGG
TGCTCTGCACCTAGCCAGCAACGCAAACTTACGCTCGCGTAGCAAACACA
TCGCCATCCGCTTTGCAGCTCTCCGGGAATGAACGCCTCTTGTGGAGGAA
CAGAGGAGACACGAACAAAGTCGACTACCGGTTCAATGCTCTTCTTGGCA
AGTGGACTGGTACACTTCTCTTCAAGCCTTCAACGCATCACAGCAACCTC
GAGCACTGGGGCAGAGCTAGTGGCATTACCTACCTGTGAGAAGCAGGGTA
TTTACCTGTCAAATTTGCTGATGGAGCTTGGACGGATGCAGCTCTCCAAA
GATAAAGTGCTCTGCGACAATAAGGGTGCTCTGCACCTAGCCAGCAACGC
AAACTTACGCTCGCGTAGCAAACACATCGCCATCCGCTTTGCAGCTCTCC
GGGAATGA
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