mRNA_H-paniculata_contig31633.8530.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31633.8530.1
Unique NamemRNA_H-paniculata_contig31633.8530.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A6H5L7F6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7F6_9PHAE)

HSP 1 Score: 189 bits (479), Expect = 2.240e-51
Identity = 99/235 (42.13%), Postives = 142/235 (60.43%), Query Frame = 1
Query:    1 FHAFRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKD----TYRMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
            F+ FRR + GDPPA+V P+ V++ T A+  + R R  + DK +WL      L   G+V+ N QA + S  M  PK+     TYR V D+RAVN  +  S  PMP+LE   + ++ A+ +  LD+LQGYW M L P+A+EIFTM+   G+Y+P +VPQGVLN T+Y+ GTM  IL  L    C + VDDI  W  T ++L+  L ++L R +   ++ AAHK   +   + WCGK+
Sbjct:  630 FNVFRRGVRGDPPANVPPMTVKLKTGAKPVKARLRTYNPDKTKWLTTCLAALVALGLVYVNLQAIWASAIMLTPKRSGDKVTYRFVGDFRAVNRQIEKSPGPMPDLEADMQRLSRATCYGSLDMLQGYWGMPLAPEAQEIFTMIGPGGLYSPERVPQGVLNATSYYQGTMNSILHDLN---CIVWVDDIVYWGETEEDLLNTLDLILARFEHHGLFVAAHKCTFYTTSVKWCGKV 861          
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A6H5K5A5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A5_9PHAE)

HSP 1 Score: 180 bits (456), Expect = 2.730e-48
Identity = 103/232 (44.40%), Postives = 137/232 (59.05%), Query Frame = 1
Query:    1 FHAFRRALS-GDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTYRMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
            ++AFRR L  GDPPA+VEPLRV +   AR  + RPR  +  K  WL       A  G+VF N QA + S AMA PKK  YR+V+D+RA N  V      MPN E     ++ A  +  LDLLQ YW+  L P+A+EIFT+ T  G+Y P +VPQG+LN T+YF  T+  IL GL    C + VDD+  W     +L+  L ++L+RL+   +Y AAHK   F   + WCGK+
Sbjct:  738 WNAFRRGLRHGDPPANVEPLRVTLKPGARPVKARPRVYNPIKTAWL-------AGLGLVFLNMQAVWASAAMATPKKGGYRLVSDFRAANKQVEKVPGVMPNPEASIAQLSAAKFYGSLDLLQWYWQCPLAPEAQEIFTIATPGGLYTPKRVPQGILNATSYFQATLTRILDGLN---CFVWVDDVVYWGMDKDDLLDTLDLILDRLEGAGLYVAAHKCTFFETSITWCGKV 959          
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A6G0NWQ3_9STRA (Reverse transcriptase domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0NWQ3_9STRA)

HSP 1 Score: 142 bits (359), Expect = 7.590e-38
Identity = 82/236 (34.75%), Postives = 123/236 (52.12%), Query Frame = 1
Query:    7 AFRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
            +FR     DPP  V PL+V+V  +A+  + +PR  S D   +LD+H  KL + G+VF N ++ + S    V KK+         RM  D R VN        P+P LE +   + GA V   +D  +GYW++ L   ++E+FT +T +G+Y PT+VP G  +   Y  G + +I  GLLG      +DDI  +A +  EL+  L  VL R +   +   A K + F  E+ WCGK+
Sbjct:   32 SFRLEFESDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAYLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPIPVLEVVLGALEGAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDIVGYAESEDELLTMLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKM 267          
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A6A4AUS0_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4AUS0_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.190e-37
Identity = 79/235 (33.62%), Postives = 124/235 (52.77%), Query Frame = 1
Query:   10 FRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
            FR     DPP  V P++V++  DAR  R +PRP S +   +LD+H   L   G+V+ N ++ + S    V K++         RM  D R+VN    P + PMP L+ +   + GA VF +LD  +GYW++ L P ++E+++ VT +G+Y PT+VP G  +   Y  G + +I   L+G      +DDI  +A     L+  L  VL R +   +   A K + F  E+ WCG++
Sbjct:   22 FRLEFGNDPPVRVTPMQVRLKDDARPVRAQPRPYSPNDRAFLDRHTAALLAHGLVYKNHRSRWASAPRIVRKREQDVDPTADPRMTIDTRSVNERTEPMSWPMPVLDVVLGELEGARVFFVLDWFRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGATDAVAYCQGVVDEIFGDLIGDGILAWLDDILGYAENESALLELLDKVLSRCEAYGLKLHAKKCQFFATEVKWCGRV 256          
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A2P4YJ51_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YJ51_9STRA)

HSP 1 Score: 145 bits (367), Expect = 2.080e-36
Identity = 79/233 (33.91%), Postives = 126/233 (54.08%), Query Frame = 1
Query:    1 FHAFRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAV--PKKDTYRMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
            F  +R  L  DPPA V PL++++   A   R + R  S +K+ +L+K  +KL   G V+ N Q+ +   A+ V  P  D YR   DYR +N++  P A  MP++E       G   + + D L+G+W++     +RE  + +T KGV+ PT+VPQG  +   +F  T+  +L  L+GK   + +DD+ ++A T  EL+  +  VL++L          K  LFR E+ WCG+I
Sbjct:  165 FGGWRLELGNDPPARVPPLKIKLKPTASPYRCKMRQYSPEKSAFLEKFNRKLVDLGCVYENRQSRWRCPALPVKKPNTDDYRQTVDYRPINAITEPIAGVMPSIEVALEHCRGKKYYALFDFLKGFWQLPFHENSREYLSYMTNKGVFTPTRVPQGSTDADLHFQSTVQMVLRELVGKCVIVWIDDLLVFAETQSELLDAIDAVLQKLDEYGFILNPKKCSLFRTEIQWCGRI 397          
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A6A3GM82_9STRA (Reverse transcriptase domain-containing protein (Fragment) n=2 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A3GM82_9STRA)

HSP 1 Score: 142 bits (357), Expect = 2.710e-36
Identity = 84/235 (35.74%), Postives = 123/235 (52.34%), Query Frame = 1
Query:    7 AFRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGK 690
            +FR     DPP  V PL+V+V  +A+  + +PR  S D   +LD+H  KL + G+VF N ++ + S    V KK+         RM  D R VN        PMP LE +   + GA V   LD  +GYW++ L   ++E+FT +T +G+Y PT+VP G  +   Y  G + +I   LLG      +DDI  +A +  EL++ L  VL R +V  +   A K + F  E+ WCGK
Sbjct:   67 SFRLEFGCDPPVKVAPLQVRVTVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPMPVLEVVLGALEGAKVVFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILAWLDDILGYAESEDELLQLLDQVLARCEVYGLKLHAKKCEFFEIEVKWCGK 301          
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A6A3YWA9_9STRA (Reverse transcriptase domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3YWA9_9STRA)

HSP 1 Score: 142 bits (358), Expect = 2.830e-35
Identity = 82/236 (34.75%), Postives = 123/236 (52.12%), Query Frame = 1
Query:    7 AFRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
            +FR     DPP  V PL+V+V  +A+  + +PR  S D   +LD+H  KL + G+VF N ++ + S    V KK+         RM  D R VN        P+P LE +   + GA V   +D  +GYW++ L   ++E+FT +T +G+Y PT+VP G  +   Y  G + +I  GLLG      +DDI  +A +  EL+  L  VL R +   +   A K + F  E+ WCGK+
Sbjct:  505 SFRLEFESDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAYLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPTADPRMTIDTRGVNERTESMPWPIPVLEVVLGALEGAKVVFAMDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGGLLGNGILAWLDDIVGYAESEDELLTLLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKM 740          
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A2P4WWJ1_9STRA (Uncharacterized protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4WWJ1_9STRA)

HSP 1 Score: 141 bits (355), Expect = 8.510e-35
Identity = 82/236 (34.75%), Postives = 124/236 (52.54%), Query Frame = 1
Query:    7 AFRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
            +FR     DPP  V PL+V+V  +A+  + +PR  S +   +LD+H  KL + G+V  N ++ + S    V KK+         RM  D R VN        PMP LE +   + GA VF  LD  +GYW++ L   ++E+FT +T +G+Y PT+VP G  +   Y  G + +I   LLG    + +DDI  +A + +EL++ L  VL R +   +   A K   F  E+ WCGK+
Sbjct:  426 SFRLEFGSDPPVKVAPLQVRVKVNAQPTKAQPRRYSSNDKAFLDRHTAKLQEFGLVSLNHRSRWASAPRIVRKKEQGSDPTADPRMTIDTRGVNERTEAMPWPMPVLEVVLSALEGAQVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDLLGNGILVWLDDILGYAESEEELLQLLDQVLARCEAYGLKLHAKKCDFFEIEVKWCGKM 661          
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A6G0MLJ8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0MLJ8_9STRA)

HSP 1 Score: 141 bits (355), Expect = 8.590e-35
Identity = 83/236 (35.17%), Postives = 123/236 (52.12%), Query Frame = 1
Query:    7 AFRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
            +FR     DPP  V PL+V+V  +A+  + +PR  S D   +LD+H  KL + G+VF N ++ + S    V KK+         RM  D R VN        PMP LE +   + GA VF  LD  +GYW++ L   ++E+FT +T +G+Y PT+VP G  +   Y  G + +I    LG      +DDI  +A +  EL++ L  VL R +   +   A K + F  E+ WCGK+
Sbjct:  334 SFRLEFGCDPPVKVAPLQVRVKVNAQPTKAQPRRYSPDDRAFLDRHTAKLLEFGLVFLNHRSRWASAPRIVRKKEQDSDPSADPRMTIDTRGVNERTEAMPWPMPVLEVVLGALEGAKVFFALDWFRGYWQLPLHEDSQELFTFITHRGMYTPTRVPMGATDAVAYCQGVVEEIFGDRLGNGILAWLDDILGYAESEDELLQLLDQVLARCEAYGLKLHAKKCEFFEIEVKWCGKM 569          
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Match: A0A6A3FJD6_9STRA (Reverse transcriptase domain-containing protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3FJD6_9STRA)

HSP 1 Score: 140 bits (352), Expect = 1.110e-34
Identity = 79/235 (33.62%), Postives = 123/235 (52.34%), Query Frame = 1
Query:   10 FRRALSGDPPADVEPLRVQVPTDARAARVRPRPMSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTY-------RMVADYRAVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREIFTMVTTKGVYAPTKVPQGVLNTTNYF*GTMGDILAGLLGKVCEMLVDDIGIWAGTWQELVRRLRVVLERLQVRRIYAAAHKAKLFRREMHWCGKI 693
            FR     DPP  V P++V++  DAR  R +PR  S +   +LD+H   L   G+V+ N ++ + S    V K++         RM  D  +VN    P + PMP L+ +  G+ GA VF +LD L+GYW++ L P ++E+++ VT +G+Y PT+VP G  +   Y  G + +I   L+G      +DDI  +A     L+  L  VL R     +   A K + F  E+ WCG++
Sbjct:  243 FRLEFGNDPPVRVAPMQVRLKDDARPVRAQPRRYSPNDRAFLDRHTAALLAHGLVYKNHRSRWASAPRIVRKREQDVDPTADPRMTIDTWSVNERTEPMSWPMPVLDVVLGGLEGARVFFVLDWLRGYWQLPLHPDSQELYSFVTHRGIYTPTRVPMGATDAVAYCHGVVEEIFGDLVGDGILAWLDDILGYAENESALLELLDKVLSRCDAYGLKLHAKKCQFFATEVKWCGRV 477          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31633.8530.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7F6_9PHAE2.240e-5142.13Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5A5_9PHAE2.730e-4844.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6G0NWQ3_9STRA7.590e-3834.75Reverse transcriptase domain-containing protein n=... [more]
A0A6A4AUS0_9STRA1.190e-3733.62Reverse transcriptase domain-containing protein (F... [more]
A0A2P4YJ51_9STRA2.080e-3633.91Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A6A3GM82_9STRA2.710e-3635.74Reverse transcriptase domain-containing protein (F... [more]
A0A6A3YWA9_9STRA2.830e-3534.75Reverse transcriptase domain-containing protein n=... [more]
A0A2P4WWJ1_9STRA8.510e-3534.75Uncharacterized protein n=1 Tax=Phytophthora palmi... [more]
A0A6G0MLJ8_9STRA8.590e-3535.17Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
A0A6A3FJD6_9STRA1.110e-3433.62Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31633contigH-paniculata_contig31633:525..1217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score95.1
Seed ortholog evalue2.5e-17
Seed eggNOG ortholog164328.Phyra85588
Hectar predicted targeting categoryother localisation
EggNOG free text desc.transposition, RNA-mediated
EggNOG OGs3QEWS@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size693
Cds size381
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31633.8530.1prot_H-paniculata_contig31633.8530.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31633 729..1109 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929975.0110877-UTR-H-paniculata_contig31633:524..7281622929975.0110877-UTR-H-paniculata_contig31633:524..728Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31633 525..728 -
1691481093.9334009-UTR-H-paniculata_contig31633:524..7281691481093.9334009-UTR-H-paniculata_contig31633:524..728Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31633 525..728 -
1622929975.0505793-UTR-H-paniculata_contig31633:1109..12171622929975.0505793-UTR-H-paniculata_contig31633:1109..1217Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31633 1110..1217 -
1691481093.9545825-UTR-H-paniculata_contig31633:1109..12171691481093.9545825-UTR-H-paniculata_contig31633:1109..1217Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31633 1110..1217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929975.0322251-CDS-H-paniculata_contig31633:728..11091622929975.0322251-CDS-H-paniculata_contig31633:728..1109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31633 729..1109 -
1691481093.9445312-CDS-H-paniculata_contig31633:728..11091691481093.9445312-CDS-H-paniculata_contig31633:728..1109Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31633 729..1109 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31633.8530.1

>prot_H-paniculata_contig31633.8530.1 ID=prot_H-paniculata_contig31633.8530.1|Name=mRNA_H-paniculata_contig31633.8530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=127bp
MSRDKAEWLDKHFKKLAQAGMVFANPQAWFGSVAMAVPKKDTYRMVADYR
AVNSLVAPSAMPMPNLEEIRRGMAGASVFCILDLLQGYWRMALDPQAREI
FTMVTTKGVYAPTKVPQGVLNTTNYF*
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mRNA from alignment at H-paniculata_contig31633:525..1217-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31633.8530.1 ID=mRNA_H-paniculata_contig31633.8530.1|Name=mRNA_H-paniculata_contig31633.8530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=693bp|location=Sequence derived from alignment at H-paniculata_contig31633:525..1217- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCCATGCGTTTCGGCGGGCGCTGAGCGGAGATCCACCGGCGGACGTGGA ACCGCTGCGGGTGCAGGTACCCACCGACGCGCGAGCCGCCCGGGTGCGGC CGCGCCCGATGTCGCGCGACAAGGCGGAATGGCTGGATAAACATTTCAAA AAGCTGGCACAGGCAGGCATGGTGTTCGCAAATCCCCAGGCATGGTTCGG CAGCGTGGCGATGGCAGTACCCAAGAAGGACACCTATCGAATGGTGGCCG ACTACCGCGCAGTAAACAGCCTGGTCGCGCCCTCGGCGATGCCGATGCCA AACTTGGAGGAGATCAGGCGAGGCATGGCGGGAGCTAGCGTGTTCTGCAT TCTGGATCTGCTGCAGGGCTACTGGCGGATGGCCCTCGACCCTCAAGCGC GAGAGATCTTCACGATGGTCACGACCAAGGGGGTATACGCGCCTACCAAA GTTCCTCAGGGAGTGCTAAATACGACTAATTATTTCTAGGGGACGATGGG AGACATACTGGCAGGCTTGCTCGGAAAAGTCTGTGAAATGTTGGTTGATG ACATAGGAATATGGGCCGGTACGTGGCAGGAACTGGTGCGGAGACTGCGG GTGGTGCTGGAGCGGCTACAAGTACGCCGTATTTATGCCGCGGCTCACAA GGCGAAGCTGTTTCGGCGGGAGATGCACTGGTGCGGGAAAATT
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Coding sequence (CDS) from alignment at H-paniculata_contig31633:525..1217-

>mRNA_H-paniculata_contig31633.8530.1 ID=mRNA_H-paniculata_contig31633.8530.1|Name=mRNA_H-paniculata_contig31633.8530.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=762bp|location=Sequence derived from alignment at H-paniculata_contig31633:525..1217- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTCGCGCGACAAGGCGGAATGGCTGGATAAACATTTCAAAAAGCTGGC
ACAGGCAGGCATGGTGTTCGCAAATCCCCAGGCATGGTTCGGCAGCGTGG
CGATGGCAGTACCCAAGAAGGACACCTATCGAATGGTGGCCGACTACCGC
GCAGTAAACAGCCTGGTCGCGCCCTCGGCGATGCCGATGCCAAACTTGGA
GGAGATCAGGCGAGGCATGGCGGGAGCTAGCGTGTTCTGCATTCTGGATC
TGCTGCAGGGCTACTGGCGGATGGCCCTCGACCCTCAAGCGCGAGAGATC
TTCACGATGGTCACGACCAAGGGGGTATACGCGCCTACCAAAGTTCCTCA
GGGAGTGCTAAATACGACTAATTATTTCTAGATGTCGCGCGACAAGGCGG
AATGGCTGGATAAACATTTCAAAAAGCTGGCACAGGCAGGCATGGTGTTC
GCAAATCCCCAGGCATGGTTCGGCAGCGTGGCGATGGCAGTACCCAAGAA
GGACACCTATCGAATGGTGGCCGACTACCGCGCAGTAAACAGCCTGGTCG
CGCCCTCGGCGATGCCGATGCCAAACTTGGAGGAGATCAGGCGAGGCATG
GCGGGAGCTAGCGTGTTCTGCATTCTGGATCTGCTGCAGGGCTACTGGCG
GATGGCCCTCGACCCTCAAGCGCGAGAGATCTTCACGATGGTCACGACCA
AGGGGGTATACGCGCCTACCAAAGTTCCTCAGGGAGTGCTAAATACGACT
AATTATTTCTAG
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