mRNA_H-paniculata_contig31587.8520.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig31587.8520.1
Unique NamemRNA_H-paniculata_contig31587.8520.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig31587.8520.1 vs. uniprot
Match: D7FMY4_ECTSI (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMY4_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 3.750e-32
Identity = 57/64 (89.06%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 EAVLHKAKGMFLKCPPRELVLQAPAYIKNTLGAGGVTALAFPPPWFTGTSLPDWILLEQSREKE 192
            EAVL KAKGMFLKCPPRELV  APAYIK TL AGGVTAL FPPPWFTGT+LPDWILLEQSREKE
Sbjct:  102 EAVLQKAKGMFLKCPPRELVTHAPAYIKETLDAGGVTALEFPPPWFTGTTLPDWILLEQSREKE 165
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BLAST of mRNA_H-paniculata_contig31587.8520.1 vs. uniprot
Match: A0A6H5JQF1_9PHAE (Rab-GAP TBC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQF1_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 2.070e-30
Identity = 57/64 (89.06%), Postives = 58/64 (90.62%), Query Frame = 1 
Query:    1 EAVLHKAKGMFLKCPPRELVLQAPAYIKNTLGAGGVTALAFPPPWFTGTSLPDWILLEQSREKE 192
            EAVL KAKGMFLKCPPRELV  APAYIK TL AGGVTAL FPPPWFTGT+LPDWILLEQSREKE
Sbjct:  376 EAVLQKAKGMFLKCPPRELVTHAPAYIKETLDAGGVTALEFPPPWFTGTTLPDWILLEQSREKE 439
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig31587.8520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FMY4_ECTSI3.750e-3289.06Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
A0A6H5JQF1_9PHAE2.070e-3089.06Rab-GAP TBC domain-containing protein n=1 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig31587contigH-paniculata_contig31587:2047..2644 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score108.2
Seed ortholog evalue1.5e-21
Seed eggNOG ortholog2880.D7FMY4
Preferred nameTBC1D20
KEGG koko:K02332,ko:K20372
KEGG Pathwayko01100,ko04139,map01100,map04139
KEGG ModuleM00294
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000902,GO:0000904,GO:0000920,GO:0001654,GO:0001675,GO:0002064,GO:0002088,GO:0002089,GO:0003006,GO:0003674,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005783,GO:0005789,GO:0005793,GO:0005794,GO:0006810,GO:0006888,GO:0006900,GO:0006901,GO:0006903,GO:0006996,GO:0007030,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007423,GO:0007548,GO:0008047,GO:0008150,GO:0008406,GO:0008584,GO:0009653,GO:0009887,GO:0009888,GO:0009966,GO:0009987,GO:0010256,GO:0010646,GO:0010927,GO:0012505,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0017016,GO:0017137,GO:0019058,GO:0019068,GO:0019899,GO:0019953,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0030154,GO:0030173,GO:0030234,GO:0030695,GO:0030855,GO:0031090,GO:0031224,GO:0031228,GO:0031267,GO:0031300,GO:0031301,GO:0031965,GO:0031967,GO:0031975,GO:0031984,GO:0032386,GO:0032388,GO:0032501,GO:0032502,GO:0032504,GO:0032879,GO:0032989,GO:0033116,GO:0033363,GO:0034389,GO:0034622,GO:0035023,GO:0035295,GO:0035459,GO:0035821,GO:0042175,GO:0042592,GO:0043010,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043547,GO:0043900,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044093,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044428,GO:0044431,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0044788,GO:0044794,GO:0044827,GO:0044829,GO:0045069,GO:0045070,GO:0045137,GO:0046546,GO:0046578,GO:0046661,GO:0046719,GO:0046726,GO:0046907,GO:0048193,GO:0048194,GO:0048199,GO:0048207,GO:0048208,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048524,GO:0048583,GO:0048592,GO:0048593,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050790,GO:0050792,GO:0050794,GO:0051020,GO:0051049,GO:0051050,GO:0051056,GO:0051179,GO:0051234,GO:0051301,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051668,GO:0051702,GO:0051704,GO:0051817,GO:0051851,GO:0060341,GO:0060429,GO:0060589,GO:0060627,GO:0060628,GO:0061024,GO:0061458,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070306,GO:0070307,GO:0070309,GO:0070925,GO:0071840,GO:0072520,GO:0090110,GO:0090114,GO:0090596,GO:0098588,GO:0098772,GO:0098791,GO:0098827,GO:1902531,GO:1902953,GO:1903900,GO:1903902
EggNOG free text desc.positive regulation of ER to Golgi vesicle-mediated transport
EggNOG OGsKOG2595@1,KOG2595@2759
Ec32 ortholog descriptionRab-GTPase-TBC domain
Ec32 orthologEc-25_002780.1
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03029,ko03032,ko04131
Exons2
Model size231
Cds size204
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig31587.8520.1prot_H-paniculata_contig31587.8520.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig31587 2074..2644 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929973.2286825-UTR-H-paniculata_contig31587:2046..20731622929973.2286825-UTR-H-paniculata_contig31587:2046..2073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31587 2047..2073 +
1691481093.2292786-UTR-H-paniculata_contig31587:2046..20731691481093.2292786-UTR-H-paniculata_contig31587:2046..2073Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig31587 2047..2073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929973.2456923-CDS-H-paniculata_contig31587:2073..21501622929973.2456923-CDS-H-paniculata_contig31587:2073..2150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31587 2074..2150 +
1691481093.2482688-CDS-H-paniculata_contig31587:2073..21501691481093.2482688-CDS-H-paniculata_contig31587:2073..2150Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31587 2074..2150 +
1622929973.2694774-CDS-H-paniculata_contig31587:2517..26441622929973.2694774-CDS-H-paniculata_contig31587:2517..2644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31587 2518..2644 +
1691481093.2634664-CDS-H-paniculata_contig31587:2517..26441691481093.2634664-CDS-H-paniculata_contig31587:2517..2644Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig31587 2518..2644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig31587.8520.1

>prot_H-paniculata_contig31587.8520.1 ID=prot_H-paniculata_contig31587.8520.1|Name=mRNA_H-paniculata_contig31587.8520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=68bp
MFLKCPPRELVLQAPAYIKNTLGAGGVTALAFPPPWFTGTSLPDWILLEQ
SREKEVSIHGPTHERVG*
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mRNA from alignment at H-paniculata_contig31587:2047..2644+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig31587.8520.1 ID=mRNA_H-paniculata_contig31587.8520.1|Name=mRNA_H-paniculata_contig31587.8520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=598bp|location=Sequence derived from alignment at H-paniculata_contig31587:2047..2644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGCAGTGCTTCATAAGGCCAAGGGCATGTTTCTCAAGTGTCCGCCCCG
CGAGCTGGTGCTGCAAGCGCCCGCCTACATCAAGAACACCCTGGGCGCCG
GCGGGTGAGAGTAATCATCACTACATGCGTGTGTGATATTCATAAATTGA
ATTAGCAGCAAATACATTGTGTGTGGTCCCGAATCAGTCCTCTTATCGGA
ACCTCTGGTCCGAAGCTGGGAATGTCTTAGCTTCGCTTTGTGCCTTGTAT
GGTCATGCTGTGGGCCGGGGAAGTGTGCCACTCGCTTGTCAAAATGCCCG
CATATGTTGTGAAACGATGCATATAACCACGATTGGATAATGACAAATGC
CTACCTTACATGCCTCCCTTGTGATTGATCAATGCTGGTGCCCGCCCCCC
ACTAAATCCGCGGGCTTTTCGTTGATTGTGCCGATGTTTCTGTGTTTTTG
TATGTTTTGGAATACCATTAGGGTGACAGCGTTAGCGTTTCCGCCGCCGT
GGTTCACCGGCACAAGTCTACCTGACTGGATATTGCTGGAGCAAAGCCGA
GAAAAAGAGGTGAGCATCCACGGACCTACACACGAACGGGTAGGGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig31587:2047..2644+

>mRNA_H-paniculata_contig31587.8520.1 ID=mRNA_H-paniculata_contig31587.8520.1|Name=mRNA_H-paniculata_contig31587.8520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at H-paniculata_contig31587:2047..2644+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTTTCTCAAGTGTCCGCCCCGCGAGCTGGTGCTGCAAGCGCCCGCCTA
CATCAAGAACACCCTGGGCGCCGGCGGATGTTTCTCAAGTGTCCGCCCCG
CGAGCTGGTGCTGCAAGCGCCCGCCTACATCAAGAACACCCTGGGCGCCG
GCGGGGTGACAGCGTTAGCGTTTCCGCCGCCGTGGTTCACCGGCACAAGT
CTACCTGACTGGATATTGCTGGAGCAAAGCCGAGAAAAAGAGGTGAGCAT
CCACGGACCTACACACGAACGGGTAGGGTAGGGTGACAGCGTTAGCGTTT
CCGCCGCCGTGGTTCACCGGCACAAGTCTACCTGACTGGATATTGCTGGA
GCAAAGCCGAGAAAAAGAGGTGAGCATCCACGGACCTACACACGAACGGG
TAGGGTAG
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