mRNA_H-paniculata_contig3140.8486.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig3140.8486.1
Unique NamemRNA_H-paniculata_contig3140.8486.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig3140.8486.1 vs. uniprot
Match: A0A6H5K0D2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0D2_9PHAE)

HSP 1 Score: 87.4 bits (215), Expect = 3.540e-17
Identity = 41/76 (53.95%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:    1 MAFRVTRHVMGALQKERNDVQLALKKTWKAHQHTDGLVTRSISPYQVDLYSSWMKSWPMKLKNRWTETGPECLLAL 228
            MAFR+T  V+GA+ +ERNDVQ AL+K WKA++  DGLV RSISPYQ++L  +++ + P KLK R+ E GPE ++ +
Sbjct:    1 MAFRMTGRVLGAVARERNDVQPALRKVWKAYEPVDGLVIRSISPYQLNLVRNFVTTIPKKLKTRFIEYGPEVMMCV 76
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BLAST of mRNA_H-paniculata_contig3140.8486.1 vs. uniprot
Match: D7G6P4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6P4_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 1.500e-6
Identity = 29/56 (51.79%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:    1 MAFRVTRHVMGALQKERNDVQLALKKTWKAHQHTDGLVTRSISPYQVDLYSSWMKS 168
            MAFR+T  V+GA+ +ERNDVQ AL+K WKAH+  DGLV+R    +    Y    KS
Sbjct:    1 MAFRMTGRVLGAVARERNDVQPALRKVWKAHEPVDGLVSREDDAHPSRKYFHKRKS 56
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BLAST of mRNA_H-paniculata_contig3140.8486.1 vs. uniprot
Match: A0A2R5GU00_9STRA (Cytochrome b-c1 complex subunit 8 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GU00_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 4.370e-6
Identity = 25/66 (37.88%), Postives = 41/66 (62.12%), Query Frame = 1 
Query:   55 DVQLALKKTWKAHQHTDGLVTRSISPYQVDLYSSWMKSWPMKLKNRWTET----GPECLLALLTLG 240
            +V   L K WK ++  +GLVTR++SPYQ D  + W+K+WP K+K++ ++     GP  L+   T+ 
Sbjct:    7 NVHPGLAKLWKKYKPINGLVTRTVSPYQQDFITPWVKTWPEKMKHKISDNLFDVGPGVLVLFGTVA 72
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig3140.8486.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K0D2_9PHAE3.540e-1753.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G6P4_ECTSI1.500e-651.79Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R5GU00_9STRA4.370e-637.88Cytochrome b-c1 complex subunit 8 n=1 Tax=Hondaea ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig3140contigH-paniculata_contig3140:14278..18903 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_000150.1
Exons3
Model size1974
Cds size297
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig3140.8486.1prot_H-paniculata_contig3140.8486.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig3140 14278..17226 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929968.600652-CDS-H-paniculata_contig3140:14277..143881622929968.600652-CDS-H-paniculata_contig3140:14277..14388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3140 14278..14388 +
1691481091.0114467-CDS-H-paniculata_contig3140:14277..143881691481091.0114467-CDS-H-paniculata_contig3140:14277..14388Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3140 14278..14388 +
1622929968.6194685-CDS-H-paniculata_contig3140:16569..166381622929968.6194685-CDS-H-paniculata_contig3140:16569..16638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3140 16570..16638 +
1691481091.0206528-CDS-H-paniculata_contig3140:16569..166381691481091.0206528-CDS-H-paniculata_contig3140:16569..16638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3140 16570..16638 +
1622929968.635474-CDS-H-paniculata_contig3140:17109..172261622929968.635474-CDS-H-paniculata_contig3140:17109..17226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3140 17110..17226 +
1691481091.032678-CDS-H-paniculata_contig3140:17109..172261691481091.032678-CDS-H-paniculata_contig3140:17109..17226Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig3140 17110..17226 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929968.6521962-UTR-H-paniculata_contig3140:17226..189031622929968.6521962-UTR-H-paniculata_contig3140:17226..18903Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3140 17227..18903 +
1691481091.0494614-UTR-H-paniculata_contig3140:17226..189031691481091.0494614-UTR-H-paniculata_contig3140:17226..18903Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig3140 17227..18903 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig3140.8486.1

>prot_H-paniculata_contig3140.8486.1 ID=prot_H-paniculata_contig3140.8486.1|Name=mRNA_H-paniculata_contig3140.8486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=99bp
MAFRVTRHVMGALQKERNDVQLALKKTWKAHQHTDGLVTRSISPYQVDLY
SSWMKSWPMKLKNRWTETGPECLLALLTLGIIPFSKIECDWNDLATRD*
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mRNA from alignment at H-paniculata_contig3140:14278..18903+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig3140.8486.1 ID=mRNA_H-paniculata_contig3140.8486.1|Name=mRNA_H-paniculata_contig3140.8486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4626bp|location=Sequence derived from alignment at H-paniculata_contig3140:14278..18903+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTTCCGTGTGACACGTCATGTTATGGGTGCGCTGCAGAAGGAGAG
AAACGACGTCCAATTGGCTCTAAAGAAGACGTGGAAGGCACACCAGCACA
CGGATGGCCTGGTGAGTTGGCCTTCGACGATATTTGATCCCCCGATGTTG
TTCGCAACAGGTCCCAGTACGCTGCTCTTGGTGCCCCTGTGTTTAGTTGC
GTGAATAGAAAGTGGGTAGGTGAGTTGGGTGACACGTTTTCTTCGAGCGA
AATAGTACTGACTTTATATTTATAGGCGTGCTGGACGGGCTACAGGGTAT
GGAACCGAATTGCCTTGTTCATACGTTCCTCTCATTTCATATTCATTTGG
GACATCTCTTTTCTGTCTTTGTGCCCGTAACAGTACGATATAAAAGCCTC
GCCTGAGCAGGGATGAGAGCAAGCAAGGACGCCTCAGCTTCTTCTGTACC
GTTTTAGATTGAAATGTTCTACCTCGTCGTAGTGGAGGAGTCGTCATTGA
TGCATGGTGACAAATACATGCCCCGGAATGGTATATTCGCCCTCGAAAAT
AAAACAGACGTACCTATTTGTACACATAACAGTGTACAGCGTAGTGCTGA
CTGTATAGTAGTACTGTTTTCAACTCTATTCTATTGTGGGTGTTGTGCCC
TAATGGCTAACGTGGGTTCTCTCGTGTGGTACACGAGGTAACTTGACATG
CATTGAATTAGAGCTCGAGAAGACAAGCGCTCTTGATTGACCGATATTAG
TACAAGTTACATCCACTATCTGTGCCCTCCTCCCGCTTTCATTGGTTCCA
AAATCCTTGATAACCTTTTGTAAAAACTTGACTTGATGAGTACCTAGGGT
ACAGTCAATAGCGAGAGCTTTTTACAGTAATACATTATACTCGTAAATCA
CACCTTTTCCTGCTTTTGAAGACGAGACGACGGCGGCAATTCGGGTTGCT
GACTTGATTTCTACACCATGTGGCTGTGGGTACGTGCATTCTGTGTACAC
TATGTGCACCGCGCCTAATGAAACCTTTTCGGCGCTAATCACTCAACACT
CACTGGTGATTAATGTCGCCGATCTGGTTTGGAGTATGAAGAGTATCGTG
CGGTGCGGTCACTGATTAGAATGAGGGTGTTTGGCCGGTTTTTGGGACTA
CAGATCATTACAGGGTCGAAGTCTTGGCCTAATCAGTGTGATGATGAAAT
TTCGGCCAGACTTAAACTTTGTGAACACGACAATGGATCACAAATGGCTC
TCTGGTTTTCGGTATCGAAGATGGCTGTATATCAGGACCCTTGTCTTTAT
CCGCTGAATATGCCTGTGATGGTCATGCTTCAATAGCTTACAGCATCACT
TGTAAGACGTGACACAGCACATCACACGGAGCAGTGTATCACACACAATT
GCTCTCGCACGCTCATGGCATGGTGTCTGGCATGCTCTCTTCTCCTTCTC
TTTCCTGGTAGTCTCACGAAATCAACTGTGTTTTTGTATTTTAATCCTGT
TGCCGTTCGAACTTTTCCTTTTCAAAGAATTACTTCGCCAGGTAGAGGTT
AGCGTGTCTTCTGAAATTAGTCCGGATTCTTGATGTTCAAGAGAAAGCGA
AAATGCGCACTTTTTCCGTCACTAGTGAGGCCCCCGTACCAATGGAGGGG
GGGGGGTTGGGGCTCGCGGCTCGAACACTCGCCTATCTCCCACCAACCTA
TTCTACATGCTCCCCGATGACTGATGAACAGTATCACTTTATCCATACTA
TTGACATAACAAATCGGCCTGTCAGGGTTGGTGTCGAGTAAGCTATTGAT
TCTGCTCTAACAGTACGAGATACTCGATAAGATTTGATCCACGCGTACAT
TGTACATACACTACTTCTCCGGTCAACTCAAGAGCTTCAGAAATACAATG
ACACATGACTCAAATTGAGCTTCACGAGGTACCTGTTGCCAACTTTCCCC
TCCTCTCGGAGATCTCCAACTAGAGGCAATTCTCGACGCTGCTATGCATG
GTGTGATTTTTAACTGACTCCACTTTCTGTTCTTTCCCTTCATCAACGCA
ACGAGGTACTGCCGTGACCTAGTATCCGACACGTACATGAGCAGGGCACG
TGCACAGACTGATCCATTCTCGGACCGGGTTCCACCACACCAGTAATTTT
TTACGCGCGCATCCAGTTTCGCTATGTACAGTCCAGTACACACCGAGTTG
TCGCAACCATGGCTGGCTCACACCGTCCCATGTTATATCCTATCCCTTGT
TCGTTACCACTTGCTGATTGTTGTTTTACTCGTATCGCATAGGTGACGCG
CTCGATTTCGCCGTACCAGGTGGACCTTTACAGCAGCTGGATGAAGTCGT
GGCCCATGAAGGTTTGTTTCTTCCTTATTTCACTGTGGTGATGCCTCAGC
TTTATGGTGGGAATGGCTGGATTGTTTTACTTCACAGATTTGATCCGGAT
ACGAGCCAACCGTTAGTACAAACCCGAGATCATAACCTGCGCCCTTGAGA
TCTTACTTGAGGTAATGCCGTGACTTGTCCCGATTCATAACTACTCCCCT
CATGAAGAGTGAACTTATGTGGGAAAGGCAACAAGCTCATGGCAATTCCA
AGTTAATCGCCCAAGCCCTCGATCCTTTTTGCTGCCGTTGTCTTTCACAA
GTTGATGTTCTACGGCAGAGAAAACGAATTTCTGCTCATCGAACCATTTT
GTTCTCACCGATCTCCCTACCTCCCTGCCCTTTCTCATGCCTGTGCTCGT
CACCATCCACGCATGTGGTTGTCGTGTCTTGTCCTCACATGTGCGCCATT
TGTGTCTGTTCTGGGGTATGCTTTTCCTGCAGCTTAAGAACCGGTGGACA
GAGACCGGGCCAGAATGCCTGTTGGCCCTCTTGACCCTTGGCATCATACC
ATTCTCCAAAATTGAGTGCGACTGGAATGATTTGGCGACCCGTGACTGAT
GTAGCTTTGTTATGGAGGAAGTCTAGTATTATGAACATGGGGCGCAGCGG
AGGCCTTTGCTATGAAGATCATCATTAATAGTGTTGAGTCTGTCTACGTG
GGGATTGAGGAAGGAGGTCCATTGCTGTTGTGTAACGTATTCGTCCCGGG
TGGGGTGTTATGGAGATTTTGTCGGACACAGGGGAGTGGGACTTGAGACG
GGCAGGAAAGTTTCGAACCTTAACGCAGCGTCTGTCGACCAGGAACTGGG
GCGCGTTTGCCTTTAGTGAAGCGAAATACTTAACTTGTGTCTAGACTGGT
ATGCGCTGTAAGTGCATGCTGATGTCTTGAGGACGGTTGTTATGAAAAGA
CGAGCGCATGATTTTTGTTTAAAAGAAAGGTGGCCGTAGTCTATTGCAGA
TGGTTGTCTTGATAACATTCTGAAATGAGTTAGCGTGACGAATCTGACAC
AATATAGGATCATTTTGAAACATGGGCCCACCTCCATTAGATTTCATGCC
CCATCTCGAGTGCTCGAGCACATGAAGTTCCACTTTCTCGGGATTAATTT
CATTAATGTCTGAACTTGTTCAATACTGTGGATCGTACTAGTGAAAATGT
GGATCAACATACCGTCAACAAAAAATCATCTGTAACATGTGGTGAGGGAT
AATTAGCCCTCGGCGACTCCTCCTTGTTGTTGCTATTGCGGACGAGAGGT
GTAACTTCATACGCCACGGGCTGGTGAAAGAAATGATGTGTTTTGATACA
CCAATACATTATGCAGTGACAGTTGAGGACATATTAACACATCGTGATTC
GTACCGGGTGGAGAGAGTGCAATATCGTACCTGTTTAGTGAAGTAGTACT
GCTGTGAGGTTTGTTTCTTCTTTTCTTCCCCTTTTATTTTTCCTCAATTG
TTTCGGAACTTCCAACAACCAAGGGCTATTTCTAATCACTGTTATGCCTA
ATCCTATTCTATGTTCTAAATTTTGATATTCCAAGATCTTAGCGTGTAAT
GGGAAGATGATTTACAATGAAAGGCGATGAAAAGAAAAATGCCAATGACT
TTTGCATCATTCGGAAAATATTGTGCTGTCTTGTGTCGAATATGCAGACG
ATTCTAGACGATGATGTCACGCAAAATTGTAAACCGTCTCGCACCATTTT
ATGACATATCACTCCATCGGTTCGATGATCAGTGAATCACACGATGAAAT
ATATGACGTCTGTCCCTCATGCCTGGTCTATCGACCACACACCGTATACC
TATTCAGGAAAGTGTCCGATGTTAAATCGGGTAGTTGCGTTGGATATCGT
GACATATTTTTCGTCAACCAAAATGTTCTGAAACATGTTCCGAAAATTGT
CCCTAGAAGAAAGATTGTTCTTTTCTATCTTTTCCGTCATGTTGGACTGC
TTCTTCGGCTCATTTAGAATTGTGTAGCTGTACACTGTTGTTGCGCACTA
CCCTCAACCTCATTCCTTGGTCGCGGAACCTCAGAAACGCCTCCACTCTT
GACTACGAACCGTCGGACTGTCTACAATAGCCCGTCCAAGAGATCCGATG
GCGGGCGCTCCCGTCCGAACGGTTACCGCCTCTACGTGGCGGACGGGATC
AACTCAACCTGGGGTAAACTCCAGGTTGATAGGGGTGAGGCCAAGAGTAA
CCACCGGATCGTCCAAGACCACCGGC
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Coding sequence (CDS) from alignment at H-paniculata_contig3140:14278..18903+

>mRNA_H-paniculata_contig3140.8486.1 ID=mRNA_H-paniculata_contig3140.8486.1|Name=mRNA_H-paniculata_contig3140.8486.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at H-paniculata_contig3140:14278..18903+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCTTTCCGTGTGACACGTCATGTTATGGGTGCGCTGCAGAAGGAGAG
AAACGACGTCCAATTGGCTCTAAAGAAGACGTGGAAGGCACACCAGCACA
CGGATGGCCTGATGGCTTTCCGTGTGACACGTCATGTTATGGGTGCGCTG
CAGAAGGAGAGAAACGACGTCCAATTGGCTCTAAAGAAGACGTGGAAGGC
ACACCAGCACACGGATGGCCTGGTGACGCGCTCGATTTCGCCGTACCAGG
TGGACCTTTACAGCAGCTGGATGAAGTCGTGGCCCATGAAGGTGACGCGC
TCGATTTCGCCGTACCAGGTGGACCTTTACAGCAGCTGGATGAAGTCGTG
GCCCATGAAGCTTAAGAACCGGTGGACAGAGACCGGGCCAGAATGCCTGT
TGGCCCTCTTGACCCTTGGCATCATACCATTCTCCAAAATTGAGTGCGAC
TGGAATGATTTGGCGACCCGTGACTGACTTAAGAACCGGTGGACAGAGAC
CGGGCCAGAATGCCTGTTGGCCCTCTTGACCCTTGGCATCATACCATTCT
CCAAAATTGAGTGCGACTGGAATGATTTGGCGACCCGTGACTGA
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