mRNA_H-paniculata_contig30773.8335.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig30773.8335.1
Unique NamemRNA_H-paniculata_contig30773.8335.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig30773.8335.1 vs. uniprot
Match: A0A6H5JHG7_9PHAE (ANAPC8 domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JHG7_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 8.440e-13
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 
Query:    1 FFLQHLLLEQHRYKEALSVLDDLHASFPGSSYILAQTAVCRYHMR 135
            FFLQHLL+EQHR K+AL++LDDL  SFP SSY+L+QTAV  YH+R
Sbjct:  330 FFLQHLLVEQHRSKDALAILDDLEPSFPCSSYVLSQTAVAHYHLR 374
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BLAST of mRNA_H-paniculata_contig30773.8335.1 vs. uniprot
Match: F4PLN6_CAVFA (Anaphase promoting complex subunit 8 n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PLN6_CAVFA)

HSP 1 Score: 50.8 bits (120), Expect = 5.230e-6
Identity = 23/49 (46.94%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 FFLQHLLLEQHRYKEALSVLDDLHASFPGSSYILAQTAVCRYHMRGITI 147
            FFL HLLL+ H+  E+L V + L ++FP S+YILAQ A+C ++ R   +
Sbjct:  313 FFLAHLLLQLHQTSESLQVYNRLLSTFPNSTYILAQIAICNFNQRAYDV 361
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig30773.8335.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JHG7_9PHAE8.440e-1371.11ANAPC8 domain-containing protein n=3 Tax=Ectocarpu... [more]
F4PLN6_CAVFA5.230e-646.94Anaphase promoting complex subunit 8 n=1 Tax=Caven... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig30773contigH-paniculata_contig30773:2492..2638 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.0
Seed ortholog evalue2.8e-09
Seed eggNOG ortholog2880.D7FLS8
Preferred nameAPC8
KEGG koko:K03355
KEGG Pathwayko04110,ko04111,ko04113,ko04114,ko04120,ko04914,ko05166,map04110,map04111,map04113,map04114,map04120,map04914,map05166
KEGG ModuleM00389
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0008150,GO:0031347,GO:0048583,GO:0050789,GO:0065007,GO:0080134
EggNOG free text desc.regulation of mitotic metaphase/anaphase transition
EggNOG OGsCOG0013@1,KOG1155@2759
Ec32 ortholog descriptionCdc23
Ec32 orthologEc-00_007980.4
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03036,ko04121
Exons1
Model size147
Cds size147
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929946.1623795-CDS-H-paniculata_contig30773:2491..26381622929946.1623795-CDS-H-paniculata_contig30773:2491..2638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30773 2492..2638 -
1691481081.1562705-CDS-H-paniculata_contig30773:2491..26381691481081.1562705-CDS-H-paniculata_contig30773:2491..2638Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig30773 2492..2638 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig30773.8335.1prot_H-paniculata_contig30773.8335.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig30773 2492..2638 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig30773.8335.1

>prot_H-paniculata_contig30773.8335.1 ID=prot_H-paniculata_contig30773.8335.1|Name=mRNA_H-paniculata_contig30773.8335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=49bp
FFLQHLLLEQHRYKEALSVLDDLHASFPGSSYILAQTAVCRYHMRGITI
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mRNA from alignment at H-paniculata_contig30773:2492..2638-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig30773.8335.1 ID=mRNA_H-paniculata_contig30773.8335.1|Name=mRNA_H-paniculata_contig30773.8335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=147bp|location=Sequence derived from alignment at H-paniculata_contig30773:2492..2638- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTCCTGCAGCACCTGCTGTTGGAGCAGCATCGGTACAAGGAGGCGTT
ATCAGTGCTGGACGATTTACACGCCTCGTTTCCTGGGAGTTCCTACATCC
TGGCCCAGACGGCGGTATGCCGTTATCATATGCGAGGTATTACTATA
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Coding sequence (CDS) from alignment at H-paniculata_contig30773:2492..2638-

>mRNA_H-paniculata_contig30773.8335.1 ID=mRNA_H-paniculata_contig30773.8335.1|Name=mRNA_H-paniculata_contig30773.8335.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=294bp|location=Sequence derived from alignment at H-paniculata_contig30773:2492..2638- (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTTTTCCTGCAGCACCTGCTGTTGGAGCAGCATCGGTACAAGGAGGCGTT
ATCAGTGCTGGACGATTTACACGCCTCGTTTCCTGGGAGTTCCTACATCC
TGGCCCAGACGGCGGTATGCCGTTATCATATGCGAGGTATTACTATATTT
TTCCTGCAGCACCTGCTGTTGGAGCAGCATCGGTACAAGGAGGCGTTATC
AGTGCTGGACGATTTACACGCCTCGTTTCCTGGGAGTTCCTACATCCTGG
CCCAGACGGCGGTATGCCGTTATCATATGCGAGGTATTACTATA
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