mRNA_H-paniculata_contig27254.7458.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig27254.7458.1
Unique NamemRNA_H-paniculata_contig27254.7458.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig27254.7458.1 vs. uniprot
Match: D7FH38_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FH38_ECTSI)

HSP 1 Score: 134 bits (337), Expect = 7.630e-33
Identity = 62/70 (88.57%), Postives = 64/70 (91.43%), Query Frame = 1 
Query:    1 RLLEAGVNGPYDRPRDPRMRRHTLLHVASACGNTEPGEKGYTPLHRAALGGHGEVARKLIKAGADKDART 210
            RLLEAGVNGPYDRPRDPR RRHTLLH++SACGNTEP EK YTPLHRA LGGH EVAR LIKAGADKDART
Sbjct:   84 RLLEAGVNGPYDRPRDPRFRRHTLLHLSSACGNTEPSEKAYTPLHRAVLGGHSEVARVLIKAGADKDART 153
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig27254.7458.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FH38_ECTSI7.630e-3388.57Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=28... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig27254contigH-paniculata_contig27254:612..3266 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score135.2
Seed ortholog evalue3.4e-29
Seed eggNOG ortholog2880.D7FH38
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons5
Model size600
Cds size600
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig27254.7458.1prot_H-paniculata_contig27254.7458.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig27254 612..3266 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929821.6987321-CDS-H-paniculata_contig27254:611..7461622929821.6987321-CDS-H-paniculata_contig27254:611..746Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27254 612..746 -
1691481026.4135704-CDS-H-paniculata_contig27254:611..7461691481026.4135704-CDS-H-paniculata_contig27254:611..746Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27254 612..746 -
1622929821.7184856-CDS-H-paniculata_contig27254:957..10801622929821.7184856-CDS-H-paniculata_contig27254:957..1080Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27254 958..1080 -
1691481026.4239073-CDS-H-paniculata_contig27254:957..10801691481026.4239073-CDS-H-paniculata_contig27254:957..1080Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27254 958..1080 -
1622929821.7367435-CDS-H-paniculata_contig27254:1476..15661622929821.7367435-CDS-H-paniculata_contig27254:1476..1566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27254 1477..1566 -
1691481026.4330544-CDS-H-paniculata_contig27254:1476..15661691481026.4330544-CDS-H-paniculata_contig27254:1476..1566Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27254 1477..1566 -
1622929821.7577448-CDS-H-paniculata_contig27254:2486..26331622929821.7577448-CDS-H-paniculata_contig27254:2486..2633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27254 2487..2633 -
1691481026.4413385-CDS-H-paniculata_contig27254:2486..26331691481026.4413385-CDS-H-paniculata_contig27254:2486..2633Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27254 2487..2633 -
1622929821.7738652-CDS-H-paniculata_contig27254:3161..32661622929821.7738652-CDS-H-paniculata_contig27254:3161..3266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27254 3162..3266 -
1691481026.4498608-CDS-H-paniculata_contig27254:3161..32661691481026.4498608-CDS-H-paniculata_contig27254:3161..3266Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig27254 3162..3266 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig27254.7458.1

>prot_H-paniculata_contig27254.7458.1 ID=prot_H-paniculata_contig27254.7458.1|Name=mRNA_H-paniculata_contig27254.7458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=200bp
RLLEAGVNGPYDRPRDPRMRRHTLLHVASACGNTEPGEKGYTPLHRAALG
GHGEVARKLIKAGADKDARTGGSGATPMHLAARKGHEACVRTLLLTGADR
DARRNLDGATPLHQASFFGQVGAVRALLHGVANPNAQDAEGCSPIFLAAQ
EGHEEVVVDLLANGASPDLSREDGWTPLHAAARFGHASTALSLLNEGVL*
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mRNA from alignment at H-paniculata_contig27254:612..3266-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig27254.7458.1 ID=mRNA_H-paniculata_contig27254.7458.1|Name=mRNA_H-paniculata_contig27254.7458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2655bp|location=Sequence derived from alignment at H-paniculata_contig27254:612..3266- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTACTGGAGGCCGGCGTGAACGGTCCGTACGATCGACCCCGAGACCC
ACGGATGCGTCGTCACACGTTGTTGCATGTGGCCTCCGCCTGCGGAAACA
CCGAGGTATGTATGTAACACTGTATTATTGTGCTATACATATGTGGAGAG
CACGTTCCTGGGGTTCCTGGGGTTTACGAACCCCGACCCCCTACACAACG
ACCAATGGCATTTTTGTCCCTTTCTCGGAACAGCTTTCTAGCTGTGTCCG
ACTCACGATGGTCACTCCATCTCCCTACTACATCCCAAGACGTAGAACCG
ATCCGCATGGAGCAGGCGGTGTCCCCTCGAGAGCCAGTATCTCCCGGGAG
CATCGTGTTCTCATATATATATATATATATATGTATATATATCACCATTG
TAGTATAACCCCCCCTCCCCCTCCCGCCGCCGTCACCTTGAAACGTCAAA
GCAGAAAGGAAAGAAGGATTGTTTATATATATATATATTTTTTAATTTGA
TGATTCTATTTTGTTTGTTGGTCTATTCGTTCCTGTAATGAACAAACCCT
GACGGTGGAAAAAATACACAACGCGATAGGTGGTCAGCATGCTCTTGCGC
TGGGGCTCTCATGCCGACGTTTGCACACGCGAGCCCGGGGAAAAAGGGTA
CACCCCGTTGCATCGGGCTGCGCTTGGGGGCCATGGGGAGGTGGCACGGA
AGCTGATAAAGGCCGGGGCGGACAAGGATGCGAGGACCGGGGGGAGCGGC
GCGACTCCCATGCATTTGGCCGCTCGCAAGGTGTGTAGGTGTAGGTATAT
ATATAGGTGAAGGCATGGGTATGTGCACGTGTGTGTAGGCGTGTGTAGGC
ATAGGTACAGGTTTAGGTGTTTTGAATGAATGTTTCAACCCTCTAGAGAG
CACATCTATGAAGTAGTACCTATATGTGCAGGACTTTTGGTCGTGGCCAG
CTGAGCCCCGTGTCTGTTTTGTCGTTCCCGCCGCTCCGCAGAGCGACCGT
GTTCATCTTGGCAAGACAGTGCGACCTGAGATTTGTTTCAATCAGCTACC
CAAAGCTTGCTAATCATCTGTATTCTGTATATTCGGTCATTATTCATTCA
CTGCCGTTTGAGCGCTATTAGCACTGGAGATATGAGGCAAGGCAAGAACC
CGAGGCTTTACACTTGCCAGCTTCGGACCGGGGGATAGGGACCCAACGCC
GCAGCTGCCGTTCAGGCGGAAAGTTTGCTACAGATAGTACATGCAGTACA
AACAAATGATTGGTATGGTTTTTTGCCCACAATGCCTACCGCAGCGCTCG
ATATTTGTTGCCAGAGAGGTCTCTCCCCCCCCCCCCCTGCCCCTTGTTGA
AGCTGCATCCATCCGAGGGGGAAGAGAAGGGTCAACGAAGATGCCTTGTG
GGAGTCGGAGGGTGTATGGGCCTTTTTTCTTTTTTTTTTCCAGTTTATCT
ATGCGTTTTCGTTGTTGTCGTGCCGTTCCTTGTGATGGCAACGGGGTGCG
AACGATTTCATATGTTCATGTATATGTATATGTACACCTAACATATATGT
GTGCGTTTGTTAGTTTCTGGTAATTCGGATTTTTATCCCCCAAGATGCAA
CAAACAAAAAAAGCTCTCAGAAAGAGATATCTTTCACACGTATGTGACCG
GGTGGATTGATTGTTCACATGGATATTGGCCCCTCGTGGTACGCTCACAG
GGCCATGAAGCTTGCGTAAGGACGCTATTGCTCACAGGCGCCGATAGAGA
TGCGAGGCGAAATTTGGATGGGGCTACTCCCCTTCATCAGGTGATTTTTT
TTCCTCGTCGGCGTCGGGGCTGGGGGTGGGGGTAGGAGGGGAGGGAACGG
GGATGAACCACTACCCTAGGAAATTTCCGTTCGTAAGTCAGTCCTGCCGT
AGGCAGTTGGGCTCTAGTTCTGAAGCTCACGTAATAACTGCACTATATCC
ATGTTGAGTTTTTGCAACAAATGACGTACAATTACCGTTTGTATAGGTGG
AAAATCATCATAGTACCTGCAATGATCGAATAATGACGGTCTTTCAAGTA
TGTATGACGTGCCTGATGCCTGGTACACAAGAATGGTGAAAGCTTTTTCT
CCTTTTAAATTGCAATACAATGACGTTGTGCATGAAGAATTTCGCGTTTT
CCCTTTCGATTTTCTCTTGTTGCTTGTCGTTGGCAGGCCTCTTTCTTTGG
ACAAGTTGGGGCCGTGCGCGCGCTGCTGCATGGCGTCGCGAATCCCAACG
CTCAGGATGCAGAAGGATGCTCGCCCATTTTTCTGGCCGCTCAAGAGGGC
CACGAAGAGGTATGGCCACGACACTGTGCTGTGTCGTGCCGTTTCTTGTG
AAGGTGGTTTTGGTGACCGTTCGTTTCTTGGCTCTGTAGCTCGATTGATG
TATCCCAATCGAAGAAAATTAACAAGTAGACGCGCATAAGGAGTAAATAT
GGCGTGATAAATCAAATAGTGGAGAATCGTATTCATGATCCAGGCTGGTG
CTGCTGGCTGTACTTGGCAGGTTGTGGTGGATTTACTTGCGAACGGAGCG
TCGCCGGACTTGAGCAGGGAGGATGGTTGGACCCCTCTCCACGCCGCGGC
ACGTTTCGGACACGCGTCCACTGCTTTGTCACTCCTCAATGAAGGTGTGT
TGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig27254:612..3266-

>mRNA_H-paniculata_contig27254.7458.1 ID=mRNA_H-paniculata_contig27254.7458.1|Name=mRNA_H-paniculata_contig27254.7458.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1200bp|location=Sequence derived from alignment at H-paniculata_contig27254:612..3266- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGTTACTGGAGGCCGGCGTGAACGGTCCGTACGATCGACCCCGAGACCC
ACGGATGCGTCGTCACACGTTGTTGCATGTGGCCTCCGCCTGCGGAAACA
CCGAGAGGTTACTGGAGGCCGGCGTGAACGGTCCGTACGATCGACCCCGA
GACCCACGGATGCGTCGTCACACGTTGTTGCATGTGGCCTCCGCCTGCGG
AAACACCGAGCCCGGGGAAAAAGGGTACACCCCGTTGCATCGGGCTGCGC
TTGGGGGCCATGGGGAGGTGGCACGGAAGCTGATAAAGGCCGGGGCGGAC
AAGGATGCGAGGACCGGGGGGAGCGGCGCGACTCCCATGCATTTGGCCGC
TCGCAAGCCCGGGGAAAAAGGGTACACCCCGTTGCATCGGGCTGCGCTTG
GGGGCCATGGGGAGGTGGCACGGAAGCTGATAAAGGCCGGGGCGGACAAG
GATGCGAGGACCGGGGGGAGCGGCGCGACTCCCATGCATTTGGCCGCTCG
CAAGGGCCATGAAGCTTGCGTAAGGACGCTATTGCTCACAGGCGCCGATA
GAGATGCGAGGCGAAATTTGGATGGGGCTACTCCCCTTCATCAGGGCCAT
GAAGCTTGCGTAAGGACGCTATTGCTCACAGGCGCCGATAGAGATGCGAG
GCGAAATTTGGATGGGGCTACTCCCCTTCATCAGGCCTCTTTCTTTGGAC
AAGTTGGGGCCGTGCGCGCGCTGCTGCATGGCGTCGCGAATCCCAACGCT
CAGGATGCAGAAGGATGCTCGCCCATTTTTCTGGCCGCTCAAGAGGGCCA
CGAAGAGGCCTCTTTCTTTGGACAAGTTGGGGCCGTGCGCGCGCTGCTGC
ATGGCGTCGCGAATCCCAACGCTCAGGATGCAGAAGGATGCTCGCCCATT
TTTCTGGCCGCTCAAGAGGGCCACGAAGAGGTTGTGGTGGATTTACTTGC
GAACGGAGCGTCGCCGGACTTGAGCAGGGAGGATGGTTGGACCCCTCTCC
ACGCCGCGGCACGTTTCGGACACGCGTCCACTGCTTTGTCACTCCTCAAT
GAAGGTGTGTTGTAGGTTGTGGTGGATTTACTTGCGAACGGAGCGTCGCC
GGACTTGAGCAGGGAGGATGGTTGGACCCCTCTCCACGCCGCGGCACGTT
TCGGACACGCGTCCACTGCTTTGTCACTCCTCAATGAAGGTGTGTTGTAG
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