mRNA_H-paniculata_contig26646.7281.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig26646.7281.1 vs. uniprot
Match: A0A6H5J897_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J897_9PHAE) HSP 1 Score: 150 bits (379), Expect = 8.790e-39 Identity = 81/199 (40.70%), Postives = 120/199 (60.30%), Query Frame = 1
Query: 1 FSVIQAARYMSAPTQQHLVAVKRSFRYLQGHPDVPITYSRCEPKLLRYSDASYC-------TRSTTGTMFFFANGLVHFSSRLQKITATSTTETELIALATCAKQGIYLLGICRELGLQLTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDRIRRHQLIIDHVPSTNQLADILTKYCERVVFAQLRSKILTFG 576
++V+ R M+ PT QH+V KR RYL+G PD+P+ + R + L Y DAS+ RS+TG +F A G+V +S LQK+TA S+ E+IA+AT A++ IYL G+ ELG + + SD+ GA+ A NS + RSK I+ R+ L+ + + +++ V S QLADILTK+ ERV F +LR+ + G
Sbjct: 505 YAVMVLCRGMNKPTNQHMVGAKRVLRYLRGCPDMPLKFRRGQWDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNIPIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 703
BLAST of mRNA_H-paniculata_contig26646.7281.1 vs. uniprot
Match: A0A6H5KC04_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KC04_9PHAE) HSP 1 Score: 134 bits (338), Expect = 2.920e-35 Identity = 71/194 (36.60%), Postives = 115/194 (59.28%), Query Frame = 1
Query: 1 FSVIQAARYMSAPTQQHLVAVKRSFRYLQGHPDVPITYSRCEPKLLRYSDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTETELIALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDRIRRHQLIIDHVPSTNQLADILTKYCERVVFAQLRSKI 564
++V Q R + P Q H+ A K RYL+G PD+PI Y + + +L ++D+S+ RSTTG +FF GL+ + ++ Q + A +T E EL AL+ A++ +Y+ E+G + S + SD+ GAL +A+N+ +SSR+KHI +RF L++ + H++ + H PS LADI TK+ + FA + I
Sbjct: 99 YAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 292
BLAST of mRNA_H-paniculata_contig26646.7281.1 vs. uniprot
Match: A0A6H5JRF1_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF1_9PHAE) HSP 1 Score: 134 bits (338), Expect = 1.240e-33 Identity = 80/198 (40.40%), Postives = 116/198 (58.59%), Query Frame = 1
Query: 7 VIQAARYMSAPTQQHLVAVKRSFRYLQGHPDVPITYSRCEPKLLR-YSDASYC-------TRSTTGTMFFFANGLVHFSSRLQKITATSTTETELIALATCAKQGIYLLGICRELGLQLTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDRIRRHQLIIDHVPSTNQLADILTKYCERVVFAQLRSKILTFG 576
VI AA + Q H+V KR RYLQG PD+ + + R + L+ Y DAS+ RS+TG +F A G+V +S LQK+TA S+ E+IA+AT A++ IYL G+ ELG + + SD+ GA+ A NS + RSK I+ R+ L+ + + +++ V S QLADILTK+ ERV F +LR+ + G
Sbjct: 324 VISAASTLQKXNQ-HMVGAKRVLRYLQGCPDMRLKFRRGQWGDLKCYCDASFAGSSERLQKRSSTGYIFILAGGVVSAASTLQKLTAQSSVHAEIIAMATAAREAIYLQGVLSELGFPCGNILIHSDSTGAMSTAGNSMFRGRSKFISTRYWLLRQNVNKGNIVLKFVRSEEQLADILTKHLERVQFVKLRTLVQEHG 520
BLAST of mRNA_H-paniculata_contig26646.7281.1 vs. uniprot
Match: A0A6H5JF46_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF46_9PHAE) HSP 1 Score: 134 bits (337), Expect = 5.470e-33 Identity = 71/194 (36.60%), Postives = 115/194 (59.28%), Query Frame = 1
Query: 1 FSVIQAARYMSAPTQQHLVAVKRSFRYLQGHPDVPITYSRCEPKLLRYSDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTETELIALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDRIRRHQLIIDHVPSTNQLADILTKYCERVVFAQLRSKI 564
++V Q R + P Q H+ A K RYL+G PD+PI Y + + +L ++D+S+ RSTTG +FF GL+ + ++ Q + A +T E EL AL+ A++ +Y+ E+G + S + SD+ GAL +A+N+ +SSR+KHI +RF L++ + H++ + H PS LADI TK+ + FA + I
Sbjct: 536 YAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGKFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATIMQLI 729
BLAST of mRNA_H-paniculata_contig26646.7281.1 vs. uniprot
Match: A0A6H5JV56_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV56_9PHAE) HSP 1 Score: 134 bits (336), Expect = 8.570e-33 Identity = 76/177 (42.94%), Postives = 114/177 (64.41%), Query Frame = 1
Query: 16 AARYMSAPTQQHLVAVKRSFRYLQGHPDVPITY---SRCEPKLLRYSDASYCT----RSTTGTMFFFANGLVHFSSRLQKITATSTTETELIALATCAKQGIYLLGICRELGL-QLTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDRIRRHQLIIDHVPSTNQLADILTK 522
AAR MS+P + HL +K FRYL+ P++ + Y SR E L YSDASY + +S TG+M F A L++FSSR+Q+I A S++E E + + AK G+Y + ELG QL ++ +D R AL L +N +S+RS+HI++R+ AL+ + ++ +DHVPS++ L+DILTK
Sbjct: 689 AARRMSSPREGHLANIKSIFRYLRKRPNLSLVYRKDSRFE--LPCYSDASYASTKDYKSVTGSMVFLAGDLIYFSSRVQRIVAQSSSEGEFFTINSTAKHGVYFSSLMGELGWSQLLKFKLLTDTRSALSLFSNGTFSNRSRHISVRYEALRGWVSSSRIALDHVPSSHMLSDILTK 863
BLAST of mRNA_H-paniculata_contig26646.7281.1 vs. uniprot
Match: A0A6H5K4S9_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4S9_9PHAE) HSP 1 Score: 134 bits (336), Expect = 8.600e-33 Identity = 70/188 (37.23%), Postives = 113/188 (60.11%), Query Frame = 1
Query: 1 FSVIQAARYMSAPTQQHLVAVKRSFRYLQGHPDVPITYSRCEPKLLRYSDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTETELIALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDRIRRHQLIIDHVPSTNQLADILTKYCERVVFA 546
++V Q R + P Q H+ A K RYL+G PD+PI Y + + +L ++D+S+ RSTTG +FF GL+ + ++ Q + A +T E EL AL+ A++ +Y+ E+G + S + SD+ GAL +A+N+ +SSR+KHI +RF L++ + H++ + H PS LADI TK+ + FA
Sbjct: 695 YAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNGRSTTGYLFFLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFA 882
BLAST of mRNA_H-paniculata_contig26646.7281.1 vs. uniprot
Match: UPI001F4EB49B (Ty1/Copia family ribonuclease HI n=1 Tax=Serratia marcescens TaxID=615 RepID=UPI001F4EB49B) HSP 1 Score: 125 bits (313), Expect = 4.220e-32 Identity = 74/195 (37.95%), Postives = 109/195 (55.90%), Query Frame = 1
Query: 1 FSVIQAARYMSAPTQQHLVAVKRSFRYLQGHPDVPITYSR-CEPKLLRYSDASYC-----TRSTTGTMFFFANGLVHFSSRLQKITATSTTETELIALATCAKQGIYLLGICRELGL-QLTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDRIRRHQLIIDHVPSTNQLADILTKYCERVVFAQLRSKI 564
+SV ARY S P + H+ AVKR RYLQG + YSR P L YSDA + +ST+G FF N LV + S+ Q+ A ST E E IA +C Q +++ + G+ Q ++ DN A++++ N SR+KHI+IR+ LK+++ ++I+D VP+ QLADI TK R + LR+ +
Sbjct: 42 YSVCLVARYQSDPREIHMQAVKRILRYLQGTKSFGLFYSRDTSPLLHAYSDADWAGDSEDRKSTSGGAFFLGNNLVSWHSKKQESVALSTAEAEYIAATSCCTQVVWMREYLKNFGVFQDGPISIKCDNSSAINISKNPVQHSRTKHISIRYHFLKEKVSEKEIILDFVPTKEQLADIFTKPLPREAYEYLRTAL 236
BLAST of mRNA_H-paniculata_contig26646.7281.1 vs. uniprot
Match: A0A6H5K8X2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8X2_9PHAE) HSP 1 Score: 124 bits (311), Expect = 1.840e-31 Identity = 68/190 (35.79%), Postives = 110/190 (57.89%), Query Frame = 1
Query: 1 FSVIQAARYMSAPTQQHLVAVKRSFRYLQGHPDVPITYSRCEPKLLRYSDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTETELIALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDRIRRHQLIIDHVPSTNQLADILTKYCERVVFAQL 552
++V Q R + P Q H+ A K RYL+G PD+PI Y + + +L ++D+S+ RSTTG +F GL+ + ++ Q + A +T E EL AL+ A + +Y+ E+G + S + SD+ GAL +A+N+ +SSR+KHI F L++ + H++ + H PS LADI TK+ + FA +
Sbjct: 78 YAVHQPTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDIGRSTTGYLFCVGGGLIGYGAKAQTLAAQNTVEVELQALSFSACEAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIRFFFFFLRELTKGHRITLHHQPSATMLADIATKHLPKQRFATI 267
BLAST of mRNA_H-paniculata_contig26646.7281.1 vs. uniprot
Match: UPI0019D5A978 (secreted RxLR effector protein 161-like n=2 Tax=Panicum virgatum TaxID=38727 RepID=UPI0019D5A978) HSP 1 Score: 122 bits (307), Expect = 4.220e-31 Identity = 71/196 (36.22%), Postives = 113/196 (57.65%), Query Frame = 1
Query: 1 FSVIQAARYMSAPTQQHLVAVKRSFRYLQGHPDVPITYSRCEPKL--LRYSDASYC-----TRSTTGTMFFFANGLVHFSSRLQKITATSTTETELIALATCAKQGIYLLGICREL-GLQLTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDRIRRHQLIIDHVPSTNQLADILTKYCERVVFAQLRSKI 564
F+V +R+M PT +HL A+KR RY+ G D + Y R + + Y D+ ++ST+GTMFF + LV++ QK+ A S+ E E IA A+ A QG++L + EL G ++ E++ D++ AL L N + RSKHI I++ ++D + + DH+ +T+QLADI+TK + F ++R KI
Sbjct: 50 FAVGYVSRFMERPTVEHLQAIKRVLRYVAGTLDCGLHYKRASDAMRYIGYCDSDLAGDVDTSKSTSGTMFFLGDCLVYWQLTKQKVVALSSYEAEYIAAASAATQGLWLSRLLEELLGSKVDVVELKMDSKSALALTKNPVFHGRSKHIRIKYHFIRDCLEEGSIKADHISTTDQLADIVTKSLGKTKFQEMRKKI 245
BLAST of mRNA_H-paniculata_contig26646.7281.1 vs. uniprot
Match: A0A6H5JN55_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN55_9PHAE) HSP 1 Score: 127 bits (320), Expect = 1.160e-30 Identity = 67/181 (37.02%), Postives = 108/181 (59.67%), Query Frame = 1
Query: 1 FSVIQAARYMSAPTQQHLVAVKRSFRYLQGHPDVPITYSRCEPKLLRYSDASYCT-----RSTTGTMFFFANGLVHFSSRLQKITATSTTETELIALATCAKQGIYLLGICRELGLQ-LTSCEVRSDNRGALHLAANSNYSSRSKHITIRFAALKDRIRRHQLIIDHVPSTNQLADILTKY 525
++V Q R + P Q H+ A K RYL+G PD+PI Y + + +L ++D+S+ RS TG +F GL+ + ++ Q + A +T E EL AL+ A++ +Y+ E+G + S + SD+ GAL +A+N+ +SSR+KHI +RF L + +RH++ + H PS LADI TK+
Sbjct: 613 YAVHQLTRACANPAQVHMAAAKHLLRYLRGTPDLPIVYKKGQFRLSCFTDSSFGANPDNRRSPTGYLFSLGGGLISYGAKAQTLAAQNTVEAELQALSFSAREAVYISNFMTEIGFKTFRSVPINSDSTGALTVASNAMFSSRTKHIALRFFFLGELTKRHRITLHHQPSATMLADIATKH 793 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26646.7281.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig26646.7281.1 >prot_H-paniculata_contig26646.7281.1 ID=prot_H-paniculata_contig26646.7281.1|Name=mRNA_H-paniculata_contig26646.7281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=185bp MSAPTQQHLVAVKRSFRYLQGHPDVPITYSRCEPKLLRYSDASYCTRSTTback to top mRNA from alignment at H-paniculata_contig26646:1560..2141- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig26646.7281.1 ID=mRNA_H-paniculata_contig26646.7281.1|Name=mRNA_H-paniculata_contig26646.7281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=582bp|location=Sequence derived from alignment at H-paniculata_contig26646:1560..2141- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig26646:1560..2141- >mRNA_H-paniculata_contig26646.7281.1 ID=mRNA_H-paniculata_contig26646.7281.1|Name=mRNA_H-paniculata_contig26646.7281.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1110bp|location=Sequence derived from alignment at H-paniculata_contig26646:1560..2141- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |