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Homology
BLAST of mRNA_H-paniculata_contig2653.7243.1 vs. uniprot
Match: A0A6H5JFE0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFE0_9PHAE) HSP 1 Score: 73.9 bits (180), Expect = 2.240e-10 Identity = 47/93 (50.54%), Postives = 59/93 (63.44%), Query Frame = 3
Query: 9 GGMGRGVVSEGDIKPPPTEPQVRGPLYQYTSRAMTAGHGPSGSIAPVRLPVLG--AWAAQ--------PASQLLPGISNIRHLSAAVAVLSDS 257
GG+G G E +KPPPTEP V GPL+QY+ R+ GHGP+ ++A VRLP L AW++ P LLPGISN R LSAA VL+D+
Sbjct: 593 GGIGDGTNLE--MKPPPTEPSVHGPLHQYSGRS---GHGPASNLAHVRLPGLPGLAWSSPSPLSPPVLPHPPLLPGISNFRRLSAAANVLADN 680
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | EsV-1-7 domain protein |
| Ec32 ortholog | Ec-18_000940.1 |
| Exons | 1 |
| Model size | 1277 |
| Cds size | 804 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2653.7243.1 >prot_H-paniculata_contig2653.7243.1 ID=prot_H-paniculata_contig2653.7243.1|Name=mRNA_H-paniculata_contig2653.7243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=268bp
MGRGVVSEGDIKPPPTEPQVRGPLYQYTSRAMTAGHGPSGSIAPVRLPVL
GAWAAQPASQLLPGISNIRHLSAAVAVLSDSPGGGGGGSSRSPWPGQPYD
SAPPGGVASASSSHQHRGGGGGGGPDQAAAQQGQQARAQQQHAGHGGAGR
QDTTGAASADQQMLAPGWAPAQAGHGFPSWGGLPMDNLGAGSGGRDGGGG
GGGGGHGPRSPHYWLPHGAQPTRPQQHHHQQMMPIPEEHAPPGRLPTSSS
MRLPGGGGGGGGHSQLP* back to topmRNA from alignment at H-paniculata_contig2653:16174..17450+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2653.7243.1 ID=mRNA_H-paniculata_contig2653.7243.1|Name=mRNA_H-paniculata_contig2653.7243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1277bp|location=Sequence derived from alignment at H-paniculata_contig2653:16174..17450+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGGTGATGGTGGCATGGGTCGTGGGGTCGTAAGTGAAGGCGACATCAAG
CCGCCGCCAACAGAGCCACAGGTTCGCGGCCCCCTGTACCAGTACACGAG
CAGGGCCATGACTGCTGGACACGGCCCCTCGGGAAGCATTGCGCCTGTGC
GCTTGCCGGTACTGGGGGCATGGGCGGCTCAGCCTGCCTCTCAGCTGCTC
CCCGGGATATCAAACATCAGGCACCTTTCGGCTGCCGTAGCAGTACTATC
CGACTCCCCTGGCGGCGGCGGCGGCGGTTCTTCTCGATCTCCCTGGCCCG
GCCAGCCGTACGACTCAGCACCTCCAGGCGGCGTAGCGTCAGCTTCTTCA
TCTCATCAGCACCGGGGCGGTGGGGGCGGTGGTGGTCCGGATCAGGCTGC
AGCCCAGCAAGGCCAACAGGCGCGAGCCCAGCAGCAGCATGCAGGACATG
GGGGCGCCGGGCGGCAGGATACAACGGGAGCAGCGTCGGCAGATCAGCAA
ATGTTAGCCCCGGGGTGGGCGCCAGCGCAAGCCGGACACGGTTTCCCGTC
GTGGGGCGGATTACCAATGGACAACCTTGGAGCAGGATCGGGGGGTCGAG
ATGGAGGTGGTGGTGGTGGTGGGGGTGGCCACGGCCCCAGATCTCCGCAT
TATTGGCTTCCTCATGGTGCACAGCCAACCCGGCCGCAACAACACCACCA
CCAACAGATGATGCCTATCCCGGAAGAGCACGCGCCCCCAGGGCGTCTGC
CTACGTCCAGCTCGATGCGTCTGCCTGGTGGTGGGGGCGGCGGGGGGGGT
CACAGTCAGTTACCATAGCCGCTTGCGGCGTGGCCCGACGTGATGGGCTC
CCGCCTCATGGCCATGCGCGGTAGGCAGGGAGAAGGGGGTGGAGTGCTTT
TGTTGCTTTGGTCTATGCCACGTTATCTCTGCAAATGAAATGACTCGCAC
GGTGCTAAGGAGGACCTCGAGACGTTGACCATGCGGTAAGTGCAACCGAG
GTAAACAGAGGATCATCCAATCCGCCTGTCGGTGACAGAGCAGGTGTGCT
ATGGGTGGAGAAAGCGAAGACTTGAGGAAAATTTTATTGTTTTTTCCCCT
GTCTTGTACATGGGCATGGCCCAAGCCAAGGATTCAATCCAGTTTAAGAC
TCCATTTGTGCCCAAAGAGGAGGAAAACAGAACGTGCGCCAATTTCTGGG
TGTAGGATGAGTTGTATAGCTTATTCCGACGAAAGAAATTAACCGAATTT
ATCAGTAGGGGCAAACGAGATGGTGGG back to topCoding sequence (CDS) from alignment at H-paniculata_contig2653:16174..17450+ >mRNA_H-paniculata_contig2653.7243.1 ID=mRNA_H-paniculata_contig2653.7243.1|Name=mRNA_H-paniculata_contig2653.7243.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1608bp|location=Sequence derived from alignment at H-paniculata_contig2653:16174..17450+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGTCGTGGGGTCGTAAGTGAAGGCGACATCAAGCCGCCGCCAACAGA
GCCACAGGTTCGCGGCCCCCTGTACCAGTACACGAGCAGGGCCATGACTG
CTGGACACGGCCCCTCGGGAAGCATTGCGCCTGTGCGCTTGCCGGTACTG
GGGGCATGGGCGGCTCAGCCTGCCTCTCAGCTGCTCCCCGGGATATCAAA
CATCAGGCACCTTTCGGCTGCCGTAGCAGTACTATCCGACTCCCCTGGCG
GCGGCGGCGGCGGTTCTTCTCGATCTCCCTGGCCCGGCCAGCCGTACGAC
TCAGCACCTCCAGGCGGCGTAGCGTCAGCTTCTTCATCTCATCAGCACCG
GGGCGGTGGGGGCGGTGGTGGTCCGGATCAGGCTGCAGCCCAGCAAGGCC
AACAGGCGCGAGCCCAGCAGCAGCATGCAGGACATGGGGGCGCCGGGCGG
CAGGATACAACGGGAGCAGCGTCGGCAGATCAGCAAATGTTAGCCCCGGG
GTGGGCGCCAGCGCAAGCCGGACACGGTTTCCCGTCGTGGGGCGGATTAC
CAATGGACAACCTTGGAGCAGGATCGGGGGGTCGAGATGGAGGTGGTGGT
GGTGGTGGGGGTGGCCACGGCCCCAGATCTCCGCATTATTGGCTTCCTCA
TGGTGCACAGCCAACCCGGCCGCAACAACACCACCACCAACAGATGATGC
CTATCCCGGAAGAGCACGCGCCCCCAGGGCGTCTGCCTACGTCCAGCTCG
ATGCGTCTGCCTGGTGGTGGGGGCGGCGGGGGGGGTCACAGTCAGTTACC
ATAGATGGGTCGTGGGGTCGTAAGTGAAGGCGACATCAAGCCGCCGCCAA
CAGAGCCACAGGTTCGCGGCCCCCTGTACCAGTACACGAGCAGGGCCATG
ACTGCTGGACACGGCCCCTCGGGAAGCATTGCGCCTGTGCGCTTGCCGGT
ACTGGGGGCATGGGCGGCTCAGCCTGCCTCTCAGCTGCTCCCCGGGATAT
CAAACATCAGGCACCTTTCGGCTGCCGTAGCAGTACTATCCGACTCCCCT
GGCGGCGGCGGCGGCGGTTCTTCTCGATCTCCCTGGCCCGGCCAGCCGTA
CGACTCAGCACCTCCAGGCGGCGTAGCGTCAGCTTCTTCATCTCATCAGC
ACCGGGGCGGTGGGGGCGGTGGTGGTCCGGATCAGGCTGCAGCCCAGCAA
GGCCAACAGGCGCGAGCCCAGCAGCAGCATGCAGGACATGGGGGCGCCGG
GCGGCAGGATACAACGGGAGCAGCGTCGGCAGATCAGCAAATGTTAGCCC
CGGGGTGGGCGCCAGCGCAAGCCGGACACGGTTTCCCGTCGTGGGGCGGA
TTACCAATGGACAACCTTGGAGCAGGATCGGGGGGTCGAGATGGAGGTGG
TGGTGGTGGTGGGGGTGGCCACGGCCCCAGATCTCCGCATTATTGGCTTC
CTCATGGTGCACAGCCAACCCGGCCGCAACAACACCACCACCAACAGATG
ATGCCTATCCCGGAAGAGCACGCGCCCCCAGGGCGTCTGCCTACGTCCAG
CTCGATGCGTCTGCCTGGTGGTGGGGGCGGCGGGGGGGGTCACAGTCAGT
TACCATAG back to top
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