mRNA_H-paniculata_contig26452.7219.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig26452.7219.1
Unique NamemRNA_H-paniculata_contig26452.7219.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig26452.7219.1 vs. uniprot
Match: D8LCP8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP8_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 1.690e-6
Identity = 28/68 (41.18%), Postives = 38/68 (55.88%), Query Frame = 1 
Query:    1 VWIGVVLDRGQTHDAVVHRTVSMVWGDICNAETFLLKVTMAYDDGTTLVTKTIPCASASDAETCWVQV 204
            +W GVV+D          R VSM WG++C+ ETF LKV+    +G T   K++PC   S  E C V+V
Sbjct:  218 IWNGVVIDPEPDAGEAFPRGVSMTWGEVCDVETFSLKVSKHTVEGNTSAVKSVPCG-LSGVEVCLVEV 284
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig26452.7219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LCP8_ECTSI1.690e-641.18Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig26452contigH-paniculata_contig26452:777..1779 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size253
Cds size249
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig26452.7219.1prot_H-paniculata_contig26452.7219.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig26452 779..1779 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929791.6404765-CDS-H-paniculata_contig26452:778..8261622929791.6404765-CDS-H-paniculata_contig26452:778..826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26452 779..826 -
1691481012.5110104-CDS-H-paniculata_contig26452:778..8261691481012.5110104-CDS-H-paniculata_contig26452:778..826Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26452 779..826 -
1622929791.656472-CDS-H-paniculata_contig26452:1214..13191622929791.656472-CDS-H-paniculata_contig26452:1214..1319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26452 1215..1319 -
1691481012.5345209-CDS-H-paniculata_contig26452:1214..13191691481012.5345209-CDS-H-paniculata_contig26452:1214..1319Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26452 1215..1319 -
1622929791.6734507-CDS-H-paniculata_contig26452:1683..17791622929791.6734507-CDS-H-paniculata_contig26452:1683..1779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26452 1684..1779 -
1691481012.5464177-CDS-H-paniculata_contig26452:1683..17791691481012.5464177-CDS-H-paniculata_contig26452:1683..1779Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig26452 1684..1779 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig26452.7219.1

>prot_H-paniculata_contig26452.7219.1 ID=prot_H-paniculata_contig26452.7219.1|Name=mRNA_H-paniculata_contig26452.7219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=83bp
VWIGVVLDRGQTHDAVVHRTVSMVWGDICNAETFLLKVTMAYDDGTTLVT
KTIPCASASDAETCWVQVSDTSRESGELLTSDV
back to top

mRNA from alignment at H-paniculata_contig26452:777..1779-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig26452.7219.1 ID=mRNA_H-paniculata_contig26452.7219.1|Name=mRNA_H-paniculata_contig26452.7219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1003bp|location=Sequence derived from alignment at H-paniculata_contig26452:777..1779- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTGGATTGGAGTCGTTCTAGATCGTGGACAAACTCATGATGCAGTCGT
CCATAGGACTGTCAGCATGGTGTGGGGCGACATCTGCAATGCCGAGGTAA
ATGCAGTAACACTGGTCCCGGTATATTATTGATTGAGTATGCTAAGTCTT
CATTCATGGTGTACACTTTTACGAATATGTTCATCAACAGAGTAAAACCA
ACTGACCCCGGGTGATGAATATTCTCGAGATGGGGTCGGTTGAAGAGGAA
CTTCTCACTATAGCTTGCTTTTAAAAATGGCGCGTGTCGCGTGTCCCACG
GTTCGCCTGACATGGGATGTATTGTGTAGTACAATAATACCCAAGAATTC
GCATAGACACTTCTTTGAATGAGGATCCCCGATGGAATGATAGCCAAGCT
AATCCTTGTTCTCGTCGACAACAATATTTGGTGAAATTACTCTTGATCTG
GCACACTAAGACATTTTTGTTGAAGGTGACAATGGCCTACGATGATGGCA
CGACCCTCGTAACCAAGACCATCCCATGTGCCTCGGCTTCGGACGCCGAA
ACCTGCTGGGTTCAGGTACACGTGGAGTGTGCGTGCTCTACATCGATTGT
CCGTAGATAAAGCAGAGAGATTGCGGATACACTCATTTCGAAAGCAGATG
ATGCAGCACCGCTAAGGGCGCAAGCTTCTTGTTCTCCCTTAAAGTAGCGT
AGACGTCTAGGCTTGATACGCATGGCGTTCGGTTCAAGTGTACCTCTTCC
ATGTACGGTGAAGTTACGGTATAGTCTCGCCTCACGTCCGAATTATTTCC
TCTCAAATAGATGTGCTTGTACTTTAGTGTGAACCCGCACGTGGAACGGA
CTGCTGCACAGAGCATCATCACGCACCGAACGCTCACTCGACATCTTCCA
CCACAATCTGGTTTCGACCAATGCGTCTTTCCAACTGCTCCCGAATTTCT
TAGGTATCGGATACATCTCGAGAGAGTGGTGAGTTGCTTACATCAGATGT
AAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig26452:777..1779-

>mRNA_H-paniculata_contig26452.7219.1 ID=mRNA_H-paniculata_contig26452.7219.1|Name=mRNA_H-paniculata_contig26452.7219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=498bp|location=Sequence derived from alignment at H-paniculata_contig26452:777..1779- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGTGGATTGGAGTCGTTCTAGATCGTGGACAAACTCATGATGCAGTCGT
CCATAGGACTGTCAGCATGGTGTGGGGCGACATCTGCAATGCCGAGGTGT
GGATTGGAGTCGTTCTAGATCGTGGACAAACTCATGATGCAGTCGTCCAT
AGGACTGTCAGCATGGTGTGGGGCGACATCTGCAATGCCGAGACATTTTT
GTTGAAGGTGACAATGGCCTACGATGATGGCACGACCCTCGTAACCAAGA
CCATCCCATGTGCCTCGGCTTCGGACGCCGAAACCTGCTGGGTTCAGACA
TTTTTGTTGAAGGTGACAATGGCCTACGATGATGGCACGACCCTCGTAAC
CAAGACCATCCCATGTGCCTCGGCTTCGGACGCCGAAACCTGCTGGGTTC
AGGTATCGGATACATCTCGAGAGAGTGGTGAGTTGCTTACATCAGATGTA
GTATCGGATACATCTCGAGAGAGTGGTGAGTTGCTTACATCAGATGTA
back to top