mRNA_H-paniculata_contig2637.7200.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2637.7200.1
Unique NamemRNA_H-paniculata_contig2637.7200.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2637.7200.1 vs. uniprot
Match: A0A6H5JK76_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK76_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 2.080e-18
Identity = 55/107 (51.40%), Postives = 68/107 (63.55%), Query Frame = 1 
Query:  154 AEEDTDVLDDKEMASTAAAGIRGDXXXXXXFGG--GDPTELLLELDNSVQFRVPAEKGRLLLVLRNRLHAAFAQHMQTNARPASGPVADTISAVSSLLHEPSVKVAA 468
            A ED + + D +  +T  AG           GG  G   ELL ELD+ VQFR+PA++GR LLVLRNRLH  FA +MQ N RPA+GP ADTI+  ++LLHEPSV   A
Sbjct:  925 AREDEEKMHDTQEVATMGAG--------GPVGGVRGRGMELLFELDDWVQFRLPADQGRNLLVLRNRLHTEFAVYMQANGRPAAGPAADTIAVANALLHEPSVAAGA 1023
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BLAST of mRNA_H-paniculata_contig2637.7200.1 vs. uniprot
Match: A0A835Z8N8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8N8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.470e-6
Identity = 39/98 (39.80%), Postives = 50/98 (51.02%), Query Frame = 1 
Query:  196 STAAAGIRGDXXXXXXFGGGD----PTELLLELDNSVQFRVPAEKGRLLLVLRNRLHAAFAQHMQTNARPASGPVADTISAVSSLLHEPSVKVAAAAS 477
            +  AA   GD       GG D    P EL+L LD+ V    P + G  LLVLR RLH AFA  ++  AR       DT+  V +LLH+P +  +AA S
Sbjct: 1283 NVTAAARGGDEGEGDGEGGDDAQEEPPELVLTLDDCVSLAAPRQLGERLLVLRQRLHRAFATRVRAPARSLGAAYDDTVRVVVALLHDPVIARSAAKS 1380
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2637.7200.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JK76_9PHAE2.080e-1851.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8N8_9STRA1.470e-639.80Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2637contigH-paniculata_contig2637:16670..18664 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size564
Cds size561
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929788.947093-CDS-H-paniculata_contig2637:16669..169721622929788.947093-CDS-H-paniculata_contig2637:16669..16972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2637 16670..16972 +
1691481011.191673-CDS-H-paniculata_contig2637:16669..169721691481011.191673-CDS-H-paniculata_contig2637:16669..16972Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2637 16670..16972 +
1622929788.9668105-CDS-H-paniculata_contig2637:18405..186631622929788.9668105-CDS-H-paniculata_contig2637:18405..18663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2637 18406..18663 +
1691481011.2003036-CDS-H-paniculata_contig2637:18405..186631691481011.2003036-CDS-H-paniculata_contig2637:18405..18663Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2637 18406..18663 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2637.7200.1prot_H-paniculata_contig2637.7200.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2637 16670..18663 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2637.7200.1

>prot_H-paniculata_contig2637.7200.1 ID=prot_H-paniculata_contig2637.7200.1|Name=mRNA_H-paniculata_contig2637.7200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=187bp
AFFCACRRACLSVCEYVFVLGYSDRAGHRLFLLPPQLCIILQLVLDTGEG
DAEEDTDVLDDKEMASTAAAGIRGDGDGDGGFGGGDPTELLLELDNSVQF
RVPAEKGRLLLVLRNRLHAAFAQHMQTNARPASGPVADTISAVSSLLHEP
SVKVAAAASSGHHGNFHGQQRNWAAPGGGGRSGGWRG
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mRNA from alignment at H-paniculata_contig2637:16670..18664+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2637.7200.1 ID=mRNA_H-paniculata_contig2637.7200.1|Name=mRNA_H-paniculata_contig2637.7200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1995bp|location=Sequence derived from alignment at H-paniculata_contig2637:16670..18664+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTTTTTCTGTGCGTGTAGACGTGCTTGCTTGTCTGTGTGCGAGTATGT
TTTTGTCCTGGGGTACTCCGATAGAGCTGGCCACCGCCTCTTTCTATTAC
CACCGCAATTGTGCATCATTCTGCAGCTGGTCCTTGATACTGGAGAAGGA
GACGCCGAAGAAGATACTGATGTACTCGATGATAAAGAAATGGCATCAAC
GGCAGCTGCAGGAATACGTGGTGATGGCGACGGCGACGGTGGATTTGGTG
GTGGAGATCCTACAGAACTTCTCTTGGAGTTGGATAACTCGGTCCAGTTT
CGGGTAAAAAGTGCTGTTTTTCTTTCTGTAAAGTAGGAATTTGATGGCTG
GTACTTCGTGGTGGTTCTGGTCATGGATGTCTTCTAGTTGAAAAGGAGTG
GGTAGACTACGGCGGCAAAATGTCGATCACGAGTCAAACAGCGACAAGGC
TGGCTGTCCGACGCCCCCTTGCCTGCCGAAAAAACAAGGCACTTTATTAC
TGCGAAACGAAATTAATACGGCCGATTGTGGGCGTTAAACCACCCTTTCG
AGACTAAATGGGTGATGTCGACGAACGTCAGTTTCCATGTATGCGCTCGT
ATTTTCATTCAATGTGCTTCTGTAATTGTAGAGAAAATCAGTTATTGATG
AAAGTCTGTGGTGTTTGCTGCGTTTCGTGGTGCGCGTGGTGTTACGGTCA
GTCTCCAGCGCACGTCGATGAGAACGTGGGTTTGTGCGGTGGGATAGGGG
CTTTAAGATTCCCAAAGAATCACTATTGCGTGCATGACTCAGCGAATTTG
AAGTCGTAAACTGATGGCTTTTGGGGGGGGGGAACGTTTGACTGTTTCTC
ACTCATTTGTTTCGCGTTCCACGTGTCTCAGAGGCGTGCCGTGACACACC
TCAGCTGACTGATTTGCGCGAAATAAACAGTGAACAACAAAAAAGGTGAG
AAATATTCCGTTGTATATCGCCTGACGGTACCTGGCCACCCACCGTAGAC
TTGCTGTCATCTCGCTCTGTTTCTCTGTCTCCCTCTCCTCTGCTACCCAA
AGCATCACGGTAGTCACCTTTCTCGAAGGATTAAATGTAAAGTCAAATTT
TATTTCGTATTGGGTAATTATTCGTCAGATCATATTCACAAGGATATGTA
CACTACAGTGGTATAGGTGGTGCGCCCGCGTTGTGTTTGAACTGAGATCG
AAGTGCCTTGCAGTACCTGCCGAATATGCATCATTTCGGTACTTATGACT
GGCAGCTGTTATCGACCTTGTAAAAGCCAGCCTGAACCACCAAAAACCTG
GCATGTCGCTCCCTCTTGGCGTCGTGGGGGTGCGGAGTCGATGGTGTCCG
AATGTGGCATGGGCAATCATACCTACCGTGCAACATGTGGCAATCATAGG
GTAGGTGAAATGTTTTGAGCCACTTTTGGCAACGCAGGAAATAGCGATTG
GCCATCGAAAACTGCTATGATAGGAACAAAGCTCTGCCCTTTTGAGTACG
TGAGGTCAATAATCTAACAACTATGGAATGCAAAACATGTCCCCGGACCG
CCCTTTTCCCACCGGCCGTGTGCATTTCAAGCGAGGTTATGTACCATGTT
CGCTCCGTTTTCGTTTCAGATGCCATTGAGGTCGCCTATTTTGGTGAGAC
CAATGATTCCACCTCCACCGTTGTCTCTCTTAGTATATAGTGCCAAACCC
TCTCCCCCCCTCCCCTCCTCCGGGCCGGGATCACAGGTCCCAGCGGAGAA
AGGACGACTACTGCTGGTCCTTCGCAACCGCCTGCACGCGGCATTCGCAC
AGCACATGCAGACCAACGCACGACCGGCCTCCGGTCCAGTTGCCGACACG
ATATCGGCGGTGAGCAGCCTCTTGCACGAACCATCTGTCAAAGTAGCTGC
GGCAGCTTCCTCCGGTCATCACGGCAACTTTCATGGCCAACAACGCAACT
GGGCCGCCCCCGGCGGTGGAGGCCGATCGGGCGGTTGGCGCGGGG
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Coding sequence (CDS) from alignment at H-paniculata_contig2637:16670..18664+

>mRNA_H-paniculata_contig2637.7200.1 ID=mRNA_H-paniculata_contig2637.7200.1|Name=mRNA_H-paniculata_contig2637.7200.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1122bp|location=Sequence derived from alignment at H-paniculata_contig2637:16670..18664+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCTTTTTTCTGTGCGTGTAGACGTGCTTGCTTGTCTGTGTGCGAGTATGT
TTTTGTCCTGGGGTACTCCGATAGAGCTGGCCACCGCCTCTTTCTATTAC
CACCGCAATTGTGCATCATTCTGCAGCTGGTCCTTGATACTGGAGAAGGA
GACGCCGAAGAAGATACTGATGTACTCGATGATAAAGAAATGGCATCAAC
GGCAGCTGCAGGAATACGTGGTGATGGCGACGGCGACGGTGGATTTGGTG
GTGGAGATCCTACAGAACTTCTCTTGGAGTTGGATAACTCGGTCCAGTTT
CGGGCTTTTTTCTGTGCGTGTAGACGTGCTTGCTTGTCTGTGTGCGAGTA
TGTTTTTGTCCTGGGGTACTCCGATAGAGCTGGCCACCGCCTCTTTCTAT
TACCACCGCAATTGTGCATCATTCTGCAGCTGGTCCTTGATACTGGAGAA
GGAGACGCCGAAGAAGATACTGATGTACTCGATGATAAAGAAATGGCATC
AACGGCAGCTGCAGGAATACGTGGTGATGGCGACGGCGACGGTGGATTTG
GTGGTGGAGATCCTACAGAACTTCTCTTGGAGTTGGATAACTCGGTCCAG
TTTCGGGTCCCAGCGGAGAAAGGACGACTACTGCTGGTCCTTCGCAACCG
CCTGCACGCGGCATTCGCACAGCACATGCAGACCAACGCACGACCGGCCT
CCGGTCCAGTTGCCGACACGATATCGGCGGTGAGCAGCCTCTTGCACGAA
CCATCTGTCAAAGTAGCTGCGGCAGCTTCCTCCGGTCATCACGGCAACTT
TCATGGCCAACAACGCAACTGGGCCGCCCCCGGCGGTGGAGGCCGATCGG
GCGGTTGGCGCGGGGTCCCAGCGGAGAAAGGACGACTACTGCTGGTCCTT
CGCAACCGCCTGCACGCGGCATTCGCACAGCACATGCAGACCAACGCACG
ACCGGCCTCCGGTCCAGTTGCCGACACGATATCGGCGGTGAGCAGCCTCT
TGCACGAACCATCTGTCAAAGTAGCTGCGGCAGCTTCCTCCGGTCATCAC
GGCAACTTTCATGGCCAACAACGCAACTGGGCCGCCCCCGGCGGTGGAGG
CCGATCGGGCGGTTGGCGCGGG
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