mRNA_H-paniculata_contig255.6945.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig255.6945.1 vs. uniprot
Match: D8LLD7_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLD7_ECTSI) HSP 1 Score: 278 bits (711), Expect = 2.540e-83 Identity = 208/563 (36.94%), Postives = 288/563 (51.15%), Query Frame = 1
Query: 1 MKVSKDIQLMWLQRWQVMDNDGSNLLDYKEFVGGCGLEDNLWSWRVFNLLDKNCTGTCVAFRMLSRRGASCTPENTVLDENDLRRFVEQRRLLRHYSKAVGMHSWDASRLQTGSRSSPKRAAALPPNVANQRKRKVDETIATTRAALDKMKRFASEPSLGRQYNSPVRHRATIDT---------VNRDQEVYLHFVATVMILYALLVAVIIPEVPRCLPNTALLRGAGTRVSNGTKIGSSRALAALRRSVRLITMSRHMSNL----------------PTTSGRKW-NINAADDDGLGDSETRRHDESSASSEDEDIVEDKNVLATGNEKPAGAANSAMIASGALTRGGKSGPKRGTEDRRWAMTVQFYEHVATAAARLEFNRTDDTGYDFSADFPKLWGMNHLHHENSIEDIRREHRKRKASTAQNVARVDTRFISCWQEA--TSGRSKLAIAFSRWRLHTCCDGLDESSLTHSLTRRSGTDTSTVCTVNGGSTIANPQSQTVAEMWETSGGAS-GDQQDIYCLVIMKEQNDRLLPSELCDKYARDMADRINRRQRTKNIPI 1602
M VS D++L WLQRWQ MD DGSNLLDY EF+ C L DN+WSWR+FNLLDKN VAFRM SRRG++ P+ +VLDE D+R FVE+R L H+ G+ S +RS + P +A++R ET +A D + + L + + R +++ RD E + ATV + A+ + E R P+ R G RV K+G +AL+ALRRS IT +R+ S PT++ + + N AD GD DE S S+ + V AT EKP LT + ++R WA+T +FY ++ TA+ RLE RT + GYDFSADFPKLW ++ +I+ RKR++S ++ A V RFI+ WQ A SGRSKLA AF+RWRL+TC +D+ S + S R GT S ST A ++ EMWE++ A G+ ++ +++ K Q DR LP ELC+ Y R+M +RI+RRQ N+PI
Sbjct: 1 MNVSPDMRLSWLQRWQSMDEDGSNLLDYPEFLQACELRDNMWSWRMFNLLDKNFVE--VAFRMCSRRGSTWDPDKSVLDEKDIRLFVEERIL--HHLYNEGLKDGPTSARARWARSMSPAELSSPVKIASKR-----ETKHLAESARDISQSGGAIRELSARKMADTRDWLKVESEMLTEAAKGAARDLEKFGRLKATVTVAVAVNRMRALAEAARQRPDGETARNTGKRVGEAAKVGGEKALSALRRSFVAITAARYFSEAGPDPARGELRRHDQQRPTSANLEGGDPNVADS---GDGMLLGEDEDSEDSQRAREDFESEVPATAVEKPWDI----------LTDAKAKAEVKMFQERHWAVTEKFYANLVTASERLEEKRTKEKGYDFSADFPKLWCAANMRGSQGEREIQYR-RKRRSSASKKAANVYLRFITLWQVAGDDSGRSKLAKAFNRWRLNTCDAAVDDLSGSLSTLSRGGTAAS-----EESSTYAPRHIPSLKEMWESAAAAGEGEGTHVHAIIMRKAQADRPLPRELCEAYEREMVERIDRRQAENNVPI 535
BLAST of mRNA_H-paniculata_contig255.6945.1 vs. uniprot
Match: A0A6H5JXQ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXQ3_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 9.760e-18 Identity = 45/68 (66.18%), Postives = 51/68 (75.00%), Query Frame = 1
Query: 1 MKVSKDIQLMWLQRWQVMDNDGSNLLDYKEFVGGCGLEDNLWSWRVFNLLDKNCTGTCVAFRMLSRRG 204
MKVS D++L WLQRWQ MD DGSNLLDY EF+ CGL DN+WSWR+FNLLDKN G A+ L RG
Sbjct: 1 MKVSSDMRLSWLQRWQSMDEDGSNLLDYTEFLQACGLRDNIWSWRMFNLLDKNFVGVMEAY--LGARG 66 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig255.6945.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig255.6945.1 >prot_H-paniculata_contig255.6945.1 ID=prot_H-paniculata_contig255.6945.1|Name=mRNA_H-paniculata_contig255.6945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=540bp MKVSKDIQLMWLQRWQVMDNDGSNLLDYKEFVGGCGLEDNLWSWRVFNLLback to top mRNA from alignment at H-paniculata_contig255:5838..10911- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig255.6945.1 ID=mRNA_H-paniculata_contig255.6945.1|Name=mRNA_H-paniculata_contig255.6945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5074bp|location=Sequence derived from alignment at H-paniculata_contig255:5838..10911- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig255:5838..10911- >mRNA_H-paniculata_contig255.6945.1 ID=mRNA_H-paniculata_contig255.6945.1|Name=mRNA_H-paniculata_contig255.6945.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3240bp|location=Sequence derived from alignment at H-paniculata_contig255:5838..10911- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |