mRNA_H-paniculata_contig25364.6905.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25364.6905.1
Unique NamemRNA_H-paniculata_contig25364.6905.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig25364.6905.1 vs. uniprot
Match: D8LNT5_ECTSI (Tryptophan--tRNA ligase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNT5_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 1.180e-19
Identity = 46/51 (90.20%), Postives = 48/51 (94.12%), Query Frame = 1 
Query:    1 EEYAAGRMLTGEVKKILIEILTEMTKTHQDARAAVTAEDVRSFMAVRPING 153
            EEYAAGRMLTGEVKKILIEILT+MTK HQDARAAVT E VRSFMAVRPI+G
Sbjct:  545 EEYAAGRMLTGEVKKILIEILTKMTKDHQDARAAVTDEMVRSFMAVRPIDG 595
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BLAST of mRNA_H-paniculata_contig25364.6905.1 vs. uniprot
Match: A0A822XKC0_NELNU (Uncharacterized protein n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A822XKC0_NELNU)

HSP 1 Score: 70.9 bits (172), Expect = 1.450e-14
Identity = 35/52 (67.31%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 EEYAAGRMLTGEVKKILIEILTEMTKTHQDARAAVTAEDVRSFMAVRPINGL 156
            +EYA GRMLTGEVKK LIE+LTE+ + H+ ARAAVT E V +FMAVRP+ G+
Sbjct:   60 KEYATGRMLTGEVKKRLIEVLTELVERHRRARAAVTDEMVDAFMAVRPLPGM 111
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BLAST of mRNA_H-paniculata_contig25364.6905.1 vs. uniprot
Match: A0A2G5DTR4_AQUCA (Tryptophan--tRNA ligase n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5DTR4_AQUCA)

HSP 1 Score: 71.6 bits (174), Expect = 1.840e-13
Identity = 34/52 (65.38%), Postives = 43/52 (82.69%), Query Frame = 1 
Query:    1 EEYAAGRMLTGEVKKILIEILTEMTKTHQDARAAVTAEDVRSFMAVRPINGL 156
            +EY AGRMLTGEVK +LIE+LTEM   H++AR+AVT E V +FMAVRP+ G+
Sbjct:  265 KEYGAGRMLTGEVKSLLIEVLTEMVMRHREARSAVTDEMVDAFMAVRPLPGM 316
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BLAST of mRNA_H-paniculata_contig25364.6905.1 vs. uniprot
Match: A0A2G5FC76_AQUCA (Tryptophan--tRNA ligase n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5FC76_AQUCA)

HSP 1 Score: 69.7 bits (169), Expect = 5.180e-13
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 EEYAAGRMLTGEVKKILIEILTEMTKTHQDARAAVTAEDVRSFMAVRPINGL 156
            +EY AGRMLTGEVK  LIE+LTEM   H++AR+AVT E V +FMAVRP+ G+
Sbjct:  197 KEYGAGRMLTGEVKSRLIEVLTEMVMRHREARSAVTDEMVDAFMAVRPLPGM 248
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BLAST of mRNA_H-paniculata_contig25364.6905.1 vs. uniprot
Match: A0A2G5FC60_AQUCA (Tryptophan--tRNA ligase n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5FC60_AQUCA)

HSP 1 Score: 69.7 bits (169), Expect = 5.980e-13
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 EEYAAGRMLTGEVKKILIEILTEMTKTHQDARAAVTAEDVRSFMAVRPINGL 156
            +EY AGRMLTGEVK  LIE+LTEM   H++AR+AVT E V +FMAVRP+ G+
Sbjct:  210 KEYGAGRMLTGEVKSRLIEVLTEMVMRHREARSAVTDEMVDAFMAVRPLPGM 261
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BLAST of mRNA_H-paniculata_contig25364.6905.1 vs. uniprot
Match: UPI000C1D8884 (tryptophan--tRNA ligase, cytoplasmic-like n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1D8884)

HSP 1 Score: 67.8 bits (164), Expect = 9.380e-13
Identity = 35/48 (72.92%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    4 EYAAGRMLTGEVKKILIEILTEMTKTHQDARAAVTAEDVRSFMAVRPI 147
            EY AGRMLTGEVKK L EILTEM + H+ ARAAVT E V +FMAVRP+
Sbjct:  125 EYGAGRMLTGEVKKRLTEILTEMVERHRRARAAVTDEMVDAFMAVRPL 172
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BLAST of mRNA_H-paniculata_contig25364.6905.1 vs. uniprot
Match: A0A2G5FC42_AQUCA (Tryptophan--tRNA ligase n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5FC42_AQUCA)

HSP 1 Score: 69.7 bits (169), Expect = 1.060e-12
Identity = 34/52 (65.38%), Postives = 42/52 (80.77%), Query Frame = 1 
Query:    1 EEYAAGRMLTGEVKKILIEILTEMTKTHQDARAAVTAEDVRSFMAVRPINGL 156
            +EY AGRMLTGEVK  LIE+LTEM   H++AR+AVT E V +FMAVRP+ G+
Sbjct:  291 KEYGAGRMLTGEVKSRLIEVLTEMVMRHREARSAVTDEMVDAFMAVRPLPGM 342
[Close]
BLAST of mRNA_H-paniculata_contig25364.6905.1 vs. uniprot
Match: A0A2G5DFW3_AQUCA (Tryptophan--tRNA ligase n=1 Tax=Aquilegia coerulea TaxID=218851 RepID=A0A2G5DFW3_AQUCA)

HSP 1 Score: 69.3 bits (168), Expect = 1.790e-12
Identity = 34/52 (65.38%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:    1 EEYAAGRMLTGEVKKILIEILTEMTKTHQDARAAVTAEDVRSFMAVRPINGL 156
            +EY AGRMLTGEVK  LIE+LTEM   H++AR+AVT E V  FMAVRP+ G+
Sbjct:  459 KEYGAGRMLTGEVKSRLIEVLTEMVMRHREARSAVTDEMVDEFMAVRPLPGM 510
[Close]
BLAST of mRNA_H-paniculata_contig25364.6905.1 vs. uniprot
Match: A0A078HTL1_BRANA ((rape) hypothetical protein n=4 Tax=Brassica TaxID=3705 RepID=A0A078HTL1_BRANA)

HSP 1 Score: 65.5 bits (158), Expect = 1.820e-12
Identity = 33/49 (67.35%), Postives = 39/49 (79.59%), Query Frame = 1 
Query:    1 EEYAAGRMLTGEVKKILIEILTEMTKTHQDARAAVTAEDVRSFMAVRPI 147
            +EY  GRMLTGEVKK L E+LTEM + H+ ARAAVT E V +FMAVRP+
Sbjct:   58 KEYGEGRMLTGEVKKRLTEVLTEMVERHRMARAAVTDEMVDAFMAVRPL 106
[Close]
BLAST of mRNA_H-paniculata_contig25364.6905.1 vs. uniprot
Match: UPI001C25D9B7 (tryptophan--tRNA ligase, cytoplasmic-like n=1 Tax=Salvia splendens TaxID=180675 RepID=UPI001C25D9B7)

HSP 1 Score: 64.7 bits (156), Expect = 1.890e-12
Identity = 31/48 (64.58%), Postives = 39/48 (81.25%), Query Frame = 1 
Query:    4 EYAAGRMLTGEVKKILIEILTEMTKTHQDARAAVTAEDVRSFMAVRPI 147
            EY +GRMLTGE+KK L E+LTE+ + H+ ARAAVT E V +FMAVRP+
Sbjct:   32 EYGSGRMLTGEIKKRLTEVLTELVERHRRARAAVTDEMVDAFMAVRPL 79
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25364.6905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNT5_ECTSI1.180e-1990.20Tryptophan--tRNA ligase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A822XKC0_NELNU1.450e-1467.31Uncharacterized protein n=1 Tax=Nelumbo nucifera T... [more]
A0A2G5DTR4_AQUCA1.840e-1365.38Tryptophan--tRNA ligase n=1 Tax=Aquilegia coerulea... [more]
A0A2G5FC76_AQUCA5.180e-1365.38Tryptophan--tRNA ligase n=1 Tax=Aquilegia coerulea... [more]
A0A2G5FC60_AQUCA5.980e-1365.38Tryptophan--tRNA ligase n=1 Tax=Aquilegia coerulea... [more]
UPI000C1D88849.380e-1372.92tryptophan--tRNA ligase, cytoplasmic-like n=1 Tax=... [more]
A0A2G5FC42_AQUCA1.060e-1265.38Tryptophan--tRNA ligase n=1 Tax=Aquilegia coerulea... [more]
A0A2G5DFW3_AQUCA1.790e-1265.38Tryptophan--tRNA ligase n=1 Tax=Aquilegia coerulea... [more]
A0A078HTL1_BRANA1.820e-1267.35(rape) hypothetical protein n=4 Tax=Brassica TaxID... [more]
UPI001C25D9B71.890e-1264.58tryptophan--tRNA ligase, cytoplasmic-like n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25364contigH-paniculata_contig25364:3186..3341 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score75.1
Seed ortholog evalue9.4e-12
Seed eggNOG ortholog2880.D8LNT5
KEGG rclassRC00055,RC00523
KEGG koko:K01867
KEGG ReactionR03664
KEGG Pathwayko00970,map00970
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0001932,GO:0001933,GO:0003674,GO:0003824,GO:0004812,GO:0004830,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006082,GO:0006139,GO:0006399,GO:0006412,GO:0006418,GO:0006436,GO:0006469,GO:0006518,GO:0006520,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008285,GO:0009058,GO:0009059,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010835,GO:0016070,GO:0016874,GO:0016875,GO:0019207,GO:0019210,GO:0019220,GO:0019222,GO:0019538,GO:0019752,GO:0019899,GO:0019900,GO:0019901,GO:0019904,GO:0022603,GO:0030234,GO:0031323,GO:0031324,GO:0031334,GO:0031399,GO:0031400,GO:0032268,GO:0032269,GO:0032991,GO:0033673,GO:0034641,GO:0034645,GO:0034660,GO:0042127,GO:0042325,GO:0042326,GO:0042802,GO:0042803,GO:0043038,GO:0043039,GO:0043043,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043436,GO:0043549,GO:0043603,GO:0043604,GO:0044087,GO:0044089,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0045765,GO:0045859,GO:0045936,GO:0046483,GO:0046983,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051239,GO:0051246,GO:0051248,GO:0051338,GO:0051348,GO:0060255,GO:0065007,GO:0065009,GO:0071704,GO:0080090,GO:0090304,GO:0098772,GO:0140098,GO:0140101,GO:1901342,GO:1901360,GO:1901564,GO:1901566,GO:1901576,GO:2000026
EggNOG free text desc.tryptophanyl-tRNA aminoacylation
EggNOG OGsCOG0180@1,KOG2145@2759
EC6.1.1.2
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko03016
Exons1
Model size156
Cds size135
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.6997426-CDS-H-paniculata_contig25364:3185..33201622929747.6997426-CDS-H-paniculata_contig25364:3185..3320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25364 3186..3320 -
1691480994.0422218-CDS-H-paniculata_contig25364:3185..33201691480994.0422218-CDS-H-paniculata_contig25364:3185..3320Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25364 3186..3320 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929747.7155144-UTR-H-paniculata_contig25364:3320..33411622929747.7155144-UTR-H-paniculata_contig25364:3320..3341Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25364 3321..3341 -
1691480994.063745-UTR-H-paniculata_contig25364:3320..33411691480994.063745-UTR-H-paniculata_contig25364:3320..3341Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig25364 3321..3341 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25364.6905.1prot_H-paniculata_contig25364.6905.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25364 3186..3320 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25364.6905.1

>prot_H-paniculata_contig25364.6905.1 ID=prot_H-paniculata_contig25364.6905.1|Name=mRNA_H-paniculata_contig25364.6905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MLTGEVKKILIEILTEMTKTHQDARAAVTAEDVRSFMAVRPINGL
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mRNA from alignment at H-paniculata_contig25364:3186..3341-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25364.6905.1 ID=mRNA_H-paniculata_contig25364.6905.1|Name=mRNA_H-paniculata_contig25364.6905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=156bp|location=Sequence derived from alignment at H-paniculata_contig25364:3186..3341- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAGAGTATGCCGCGGGGAGGATGCTTACTGGCGAAGTGAAGAAAATTCT
GATCGAAATACTGACAGAAATGACCAAAACTCACCAGGATGCACGGGCAG
CTGTAACCGCCGAAGACGTCCGAAGTTTCATGGCGGTACGACCCATAAAC
GGGTTG
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Coding sequence (CDS) from alignment at H-paniculata_contig25364:3186..3341-

>mRNA_H-paniculata_contig25364.6905.1 ID=mRNA_H-paniculata_contig25364.6905.1|Name=mRNA_H-paniculata_contig25364.6905.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig25364:3186..3341- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCTTACTGGCGAAGTGAAGAAAATTCTGATCGAAATACTGACAGAAAT
GACCAAAACTCACCAGGATGCACGGGCAGCTGTAACCGCCGAAGACGTCC
GAAGTTTCATGGCGGTACGACCCATAAACGGGTTGATGCTTACTGGCGAA
GTGAAGAAAATTCTGATCGAAATACTGACAGAAATGACCAAAACTCACCA
GGATGCACGGGCAGCTGTAACCGCCGAAGACGTCCGAAGTTTCATGGCGG
TACGACCCATAAACGGGTTG
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