mRNA_H-paniculata_contig25231.6874.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig25231.6874.1
Unique NamemRNA_H-paniculata_contig25231.6874.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig25231.6874.1 vs. uniprot
Match: D7FH97_ECTSI (Similar to chromosome fragility associated gene 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH97_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 1.350e-9
Identity = 38/71 (53.52%), Postives = 51/71 (71.83%), Query Frame = 1 
Query:  241 MTDEQLLLAVEMFLTKDQRKRKARLIKAQTEQRNAIDAERKLLSDRAQRDAWAQQA--HAPTQAIPHSKRG 447
            MTD+QLL AV+MFLT +QRKRK  + + Q ++R  IDA  KLLSDRAQRD+WA  A   +P + +  ++RG
Sbjct:  689 MTDDQLLSAVDMFLTTEQRKRKEAIKRDQAKKRKDIDAANKLLSDRAQRDSWAHSAASFSPGEEVAWTERG 759
[Close]
BLAST of mRNA_H-paniculata_contig25231.6874.1 vs. uniprot
Match: A0A6H5KGC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGC2_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.420e-9
Identity = 35/56 (62.50%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:  241 MTDEQLLLAVEMFLTKDQRKRKARLIKAQTEQRNAIDAERKLLSDRAQRDAWAQQA 408
            MTD+QLL AV+MFLT DQRKRK  + + Q ++R  IDA  KLL DRAQRD+WA  A
Sbjct:  440 MTDDQLLSAVDMFLTTDQRKRKEAIKRDQAKKRKDIDAANKLLRDRAQRDSWAHSA 495
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig25231.6874.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FH97_ECTSI1.350e-953.52Similar to chromosome fragility associated gene 1 ... [more]
A0A6H5KGC2_9PHAE4.420e-962.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig25231contigH-paniculata_contig25231:814..2731 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.4
Seed ortholog evalue6.7e-09
Seed eggNOG ortholog2880.D7FH97
KEGG koko:K10754
KEGG Pathwayko03030,ko03420,ko03430,map03030,map03420,map03430
KEGG ModuleM00289,M00295
Hectar predicted targeting categoryother localisation
EggNOG free text desc.DNA clamp loader activity
EggNOG OGsCOG5275@1,KOG1968@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03032,ko03400
Exons2
Model size465
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929743.7796829-CDS-H-paniculata_contig25231:814..10041622929743.7796829-CDS-H-paniculata_contig25231:814..1004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25231 815..1004 -
1691480992.2157803-CDS-H-paniculata_contig25231:814..10041691480992.2157803-CDS-H-paniculata_contig25231:814..1004Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25231 815..1004 -
1622929743.7944496-CDS-H-paniculata_contig25231:2459..27311622929743.7944496-CDS-H-paniculata_contig25231:2459..2731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25231 2460..2731 -
1691480992.2289867-CDS-H-paniculata_contig25231:2459..27311691480992.2289867-CDS-H-paniculata_contig25231:2459..2731Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig25231 2460..2731 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig25231.6874.1prot_H-paniculata_contig25231.6874.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig25231 815..2731 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig25231.6874.1

>prot_H-paniculata_contig25231.6874.1 ID=prot_H-paniculata_contig25231.6874.1|Name=mRNA_H-paniculata_contig25231.6874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=154bp
VTEVHDDDDDDVQEMGVVVQHSRPDTVSHSGSGSGDVPNLQGEAVFPITS
GGVSSRKNTPVRVANAVERGGVTPAASDGDMTDEQLLLAVEMFLTKDQRK
RKARLIKAQTEQRNAIDAERKLLSDRAQRDAWAQQAHAPTQAIPHSKRGS
PSDG
back to top

mRNA from alignment at H-paniculata_contig25231:814..2731-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig25231.6874.1 ID=mRNA_H-paniculata_contig25231.6874.1|Name=mRNA_H-paniculata_contig25231.6874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1918bp|location=Sequence derived from alignment at H-paniculata_contig25231:814..2731- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACAGAGGTCCACGATGATGACGATGACGACGTGCAGGAGATGGGTGT
CGTTGTACAACATTCCAGACCCGACACTGTATCTCACTCAGGCAGCGGTA
GCGGCGACGTGCCAAATCTCCAGGGGGAGGCAGTTTTTCCCATCACCAGT
GGTGGTGTAAGCAGTCGGAAAAATACGCCTGTACGCGTGGCAAATGCTGT
TGAGCGTGGAGGCGTTACTCCCGCTGCTTCCGACGGCGATATGACGGATG
AGCAGCTTCTCTTGGCCGTAGAGTGAGTGCTCCGCCCCGATAACATTTGG
TCCTCTACGACGTTATATAGAACCCATAATTTTACGCTCTGTTAATGTAA
AATATGCAACTGAAATCAATAAAGGTACAACAAGACTTGAAATATTTACT
AAAATAAAAATAGTAAATGATAAATTCATTAAAACTAGTAGTAATAAGAC
ATATAAAAACTTATACTTTGCGTAAAAAAACAAATAAAAAAAAAGAATTT
ATTAACACTGTATTTTCTATTTCTACAACTAATAATTAATATCCATAATT
AGCGAATGAAATGTTGTTGTACGATAAAAAAGATGAAATTTTCGCACCCT
GGACGAGTCAGATCGTTCTATACTACTCGTACTGGTATGTAGCAGTATCT
AGTAATAGTACGCCAGCGTCATATGCCTGTGTTGTCTGTGTTTTGTTCTG
GACCCACCGCACAACATGTAAGTCAGTTGTACGGTACTGTATCCATGCAC
CCCATCAAGAAATGGTGAGTAATCGTTAGAGTAAGAAATATCGATATCTG
AAAAAGCATCATCACCCTCGATCCGAATTATACTATTGGTTAGAAAAATT
GATGTATCATTTTTTGTTTTTTGGAGAGCTCATGTATACAGTTTATACAA
TTATTACCAGTACGGAGTTACACCAGCCCCCTCCCCCTGCCTCCCCCCCA
CACACAAACACCGGAGTAGTTTATGACGCACAAAGAGGTTTATATGCCCT
GAACTCGAATGGAATGTCATGCAACGTGTGAGCTCGCCACTACCACCACC
GCCTCCGCCTCTGCCCTCGTGAAAACACTGTTTACATTTTTTTTTTTTTT
AACACCCCCATTTAGTAATTCATATACTTCATCTATGCCTCAAGTAAAGT
CGCTTCAGTTTATTGAGGCGCGTAACTATCTCCGAATTTTCCTTTTTCGG
TTATGATAACTACAAGTTTTTGCGGTTATTCCCCCCCCCCAGAATTTCAC
AGAAATTGCCGAAATCTATCGGATGCGCATCGGCCATAAAAAGAAATGGC
GGCCAAAAAAAGGACACGTTTCTACCTCTTTTGGAATTTCCCAATGGAAA
AAGATGAAAATTGGGGGGAATAACATACCAACGGGACAATGGTCAAAATT
AGCCGAATTTCAAGCGGCCACTAATCCTGATACACGAATCGGAACGCACT
ACGGAATAAGGCATATGAAGCTAGTCAAATTTTAACTCGCCCACGATTCC
AACCGTAGCCTTGGAACAGTCTTAGGTCTCGAGATGTAATCTGCCGAACA
CAGCCGAATTAATTCTCTTACGGCACGGAGGATATGTAATGAGCATTAGA
AACACTCGGTGTCATATTTGGTGTGACGACGGTATTTATGTAAACCCTCC
AGGGTTACACGCCAAAGGATCACATCTTGAGTGCTGTCTTTTTACTGTAT
TCACCACCCAACTTTTGTGTTTTTCAGAATGTTCCTGACTAAGGACCAGC
GGAAGAGAAAAGCCCGGCTTATCAAGGCACAGACTGAACAGCGAAATGCC
ATCGACGCAGAACGAAAACTCCTGAGCGACAGAGCACAGCGAGACGCTTG
GGCCCAGCAAGCACACGCCCCGACCCAAGCTATCCCCCACAGCAAACGGG
GATCACCATCTGATGGGG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig25231:814..2731-

>mRNA_H-paniculata_contig25231.6874.1 ID=mRNA_H-paniculata_contig25231.6874.1|Name=mRNA_H-paniculata_contig25231.6874.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at H-paniculata_contig25231:814..2731- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTGACAGAGGTCCACGATGATGACGATGACGACGTGCAGGAGATGGGTGT
CGTTGTACAACATTCCAGACCCGACACTGTATCTCACTCAGGCAGCGGTA
GCGGCGACGTGCCAAATCTCCAGGGGGAGGCAGTTTTTCCCATCACCAGT
GGTGGTGTAAGCAGTCGGAAAAATACGCCTGTACGCGTGGCAAATGCTGT
TGAGCGTGGAGGCGTTACTCCCGCTGCTTCCGACGGCGATATGACGGATG
AGCAGCTTCTCTTGGCCGTAGAGTGACAGAGGTCCACGATGATGACGATG
ACGACGTGCAGGAGATGGGTGTCGTTGTACAACATTCCAGACCCGACACT
GTATCTCACTCAGGCAGCGGTAGCGGCGACGTGCCAAATCTCCAGGGGGA
GGCAGTTTTTCCCATCACCAGTGGTGGTGTAAGCAGTCGGAAAAATACGC
CTGTACGCGTGGCAAATGCTGTTGAGCGTGGAGGCGTTACTCCCGCTGCT
TCCGACGGCGATATGACGGATGAGCAGCTTCTCTTGGCCGTAGAAATGTT
CCTGACTAAGGACCAGCGGAAGAGAAAAGCCCGGCTTATCAAGGCACAGA
CTGAACAGCGAAATGCCATCGACGCAGAACGAAAACTCCTGAGCGACAGA
GCACAGCGAGACGCTTGGGCCCAGCAAGCACACGCCCCGACCCAAGCTAT
CCCCCACAGCAAACGGGGATCACCATCTGATGGGAATGTTCCTGACTAAG
GACCAGCGGAAGAGAAAAGCCCGGCTTATCAAGGCACAGACTGAACAGCG
AAATGCCATCGACGCAGAACGAAAACTCCTGAGCGACAGAGCACAGCGAG
ACGCTTGGGCCCAGCAAGCACACGCCCCGACCCAAGCTATCCCCCACAGC
AAACGGGGATCACCATCTGATGGG
back to top