mRNA_H-paniculata_contig24854.6750.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig24854.6750.1 vs. uniprot
Match: A0A6A3ACL1_HIBSY (Putative cyclic nucleotide-gated ion channel 8 n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A3ACL1_HIBSY) HSP 1 Score: 197 bits (501), Expect = 3.580e-54 Identity = 101/223 (45.29%), Postives = 146/223 (65.47%), Query Frame = 1
Query: 1 DRAGPVD-KSFGGCRFAIIFVDDYSRIRKVYTLRKKSKALWALKKFERDVARANGLRIKRLRSDQRGEYTGKPFRQFCAENGIKQEFSAVYTPQRNGVAERSWRSILEVARASMVTADMGHRYCAEAVRSAVYYLNRAPTRPHNGGTPYEKWNGETPKLDHLRVFGCMVCVMLQLQQRGQLDDKAWTGVFLGYDVDSPSYRIYNPKNKSVQLSRKVRYDEEDF 666
D AGP D S GG R+ + F+DD+SR +Y L++KS+AL L++F+ + +G +K LRSD+ GEYT K F +FC E+GI + +A YTPQ+NGVAER R+IL++AR+ + + + AEAVR AVY LNR PT+ TP E W+G+ P + HL++FGC+ + Q R +LDD+ +F+GYD S +YR+YNP K + +SR V +DE D+
Sbjct: 291 DIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 513
BLAST of mRNA_H-paniculata_contig24854.6750.1 vs. uniprot
Match: A0A2I0WJT9_9ASPA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dendrobium catenatum TaxID=906689 RepID=A0A2I0WJT9_9ASPA) HSP 1 Score: 182 bits (462), Expect = 8.420e-54 Identity = 86/212 (40.57%), Postives = 134/212 (63.21%), Query Frame = 1
Query: 25 SFGGCRFAIIFVDDYSRIRKVYTLRKKSKALWALKKFERDVARANGLRIKRLRSDQRGEYTGKPFRQFCAENGIKQEFSAVYTPQRNGVAERSWRSILEVARASMVTADMGHRYCAEAVRSAVYYLNRAPTRPHNGGTPYEKWNGETPKLDHLRVFGCMVCVMLQLQQRGQLDDKAWTGVFLGYDVDSPSYRIYNPKNKSVQLSRKVRYDEE 660
S ++ I+F+DDY+R+ VY L++KS+ K F+ V +G +IK LRSD+ GE+ F FC E G++ + + YTPQ+NGV ER R+++E+AR+ ++ D+ ++ AEAV +AVY LNR PT+ TP E W+G+ P +DH R+FGC+ V + Q+R +L++K G+FLGY S Y +N K + + SR V++DE+
Sbjct: 5 SLSNYKYFILFIDDYTRMAWVYFLKEKSETFGIFKNFKLLVENQSGQKIKILRSDRGGEFNSCQFEDFCKEEGLEHQLTVAYTPQQNGVTERKNRTVMEMARSMLIAKDIPKKFWAEAVNTAVYVLNRCPTKAVKDITPIEAWSGDKPSVDHFRIFGCLCYVHIPKQKRHKLEEKPDKGIFLGYSSQSKGYIFFNLKTQQLVTSRDVKFDED 216
BLAST of mRNA_H-paniculata_contig24854.6750.1 vs. uniprot
Match: A0A6A2WSU7_HIBSY (Integrase catalytic domain-containing protein n=2 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WSU7_HIBSY) HSP 1 Score: 196 bits (497), Expect = 1.170e-53 Identity = 100/223 (44.84%), Postives = 144/223 (64.57%), Query Frame = 1
Query: 1 DRAGPVD-KSFGGCRFAIIFVDDYSRIRKVYTLRKKSKALWALKKFERDVARANGLRIKRLRSDQRGEYTGKPFRQFCAENGIKQEFSAVYTPQRNGVAERSWRSILEVARASMVTADMGHRYCAEAVRSAVYYLNRAPTRPHNGGTPYEKWNGETPKLDHLRVFGCMVCVMLQLQQRGQLDDKAWTGVFLGYDVDSPSYRIYNPKNKSVQLSRKVRYDEEDF 666
D AGP D S GG R+ + F+DD+SR +Y L++KS+AL LK+F+ + +G +K LRSD+ GEYT K F +FC E+GI + +A YTPQ+NGVAER R+IL++AR+ + + + AEAVR AVY LNR PT+ TP E W+G+ P + H ++FGC+ + R +LDD+ +F+GYD S +YR+YNP K + +SR V +DE D+
Sbjct: 396 DIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLKEFKAMAEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTARYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHFKIFGCIAYAHVPEHTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 618
BLAST of mRNA_H-paniculata_contig24854.6750.1 vs. uniprot
Match: A0A6A2WXP0_HIBSY (Phospholipase D n=1 Tax=Hibiscus syriacus TaxID=106335 RepID=A0A6A2WXP0_HIBSY) HSP 1 Score: 196 bits (497), Expect = 1.250e-53 Identity = 100/223 (44.84%), Postives = 145/223 (65.02%), Query Frame = 1
Query: 1 DRAGPVD-KSFGGCRFAIIFVDDYSRIRKVYTLRKKSKALWALKKFERDVARANGLRIKRLRSDQRGEYTGKPFRQFCAENGIKQEFSAVYTPQRNGVAERSWRSILEVARASMVTADMGHRYCAEAVRSAVYYLNRAPTRPHNGGTPYEKWNGETPKLDHLRVFGCMVCVMLQLQQRGQLDDKAWTGVFLGYDVDSPSYRIYNPKNKSVQLSRKVRYDEEDF 666
D AGP D S GG R+ + F+DD+SR +Y L++KS+AL L++F+ + +G +K LRSD+ GEYT K F +FC E+GI + + YTPQ+NGVAER R+IL++AR+ + + + AEAVR AVY LNR PT+ TP E W+G+ P + HL++FGC+ + Q R +LDD+ +F+GYD S +YR+YNP K + +SR V +DE D+
Sbjct: 1317 DIAGPFDIPSLGGNRYYLTFIDDFSRKCWIYILKEKSEALEKLREFKAMSEKQSGQYLKILRSDRGGEYTSKLFEEFCKEHGIIHQLTGRYTPQQNGVAERKNRTILDMARSMIKGKQLPRNFWAEAVRCAVYLLNRCPTKSVKYMTPNEAWSGQKPGVGHLKIFGCIAYAHVPEQTRKKLDDRGEKCIFIGYDERSKAYRLYNPLTKKIIISRDVEFDEADY 1539
BLAST of mRNA_H-paniculata_contig24854.6750.1 vs. uniprot
Match: A0A2Z7BCE9_9LAMI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7BCE9_9LAMI) HSP 1 Score: 191 bits (485), Expect = 5.140e-53 Identity = 92/222 (41.44%), Postives = 149/222 (67.12%), Query Frame = 1
Query: 1 DRAGPV-DKSFGGCRFAIIFVDDYSRIRKVYTLRKKSKALWALKKFERDVARANGLRIKRLRSDQRGEYTGKPFRQFCAENGIKQEFSAVYTPQRNGVAERSWRSILEVARASMVTADMGHRYCAEAVRSAVYYLNRAPTRPHNGGTPYEKWNGETPKLDHLRVFGCMVCVMLQLQQRGQLDDKAWTGVFLGYDVDSPSYRIYNPKNKSVQLSRKVRYDEED 663
D GP+ ++ GG ++ ++FVDDYSR+ VY L+ KS+A KF+ V + G +K LR+D+ GE+T F Q+C ++GI +E +A YTP++NGVAER R+I+E+AR+ + + + + + AEAV +AVY +N +PT+ TPYE W+G+ P ++HL++FGC+V V++ +R +L++K+ +F+GY S +YR+YNP V +SR ++EED
Sbjct: 355 DLCGPMRTETLGGSKYFLLFVDDYSRMSWVYFLKFKSEAFGQFFKFKALVEKQKGSNLKILRTDRGGEFTSMEFNQYCEKHGIHKELTAPYTPEQNGVAERKNRTIVEMARSMLKSKGLPYNFWAEAVTTAVYLINLSPTKAVMNKTPYEAWSGKRPSVEHLKIFGCIVYVLINANERHKLEEKSIKCIFIGYCSQSKAYRVYNPATGKVIVSRNTVFNEED 576
BLAST of mRNA_H-paniculata_contig24854.6750.1 vs. uniprot
Match: A0A2G2VUS6_CAPBA (Integrase catalytic domain-containing protein n=1 Tax=Capsicum baccatum TaxID=33114 RepID=A0A2G2VUS6_CAPBA) HSP 1 Score: 189 bits (481), Expect = 1.690e-51 Identity = 100/223 (44.84%), Postives = 140/223 (62.78%), Query Frame = 1
Query: 1 DRAGPVD-KSFGGCRFAIIFVDDYSRIRKVYTLRKKSKALWALKKFERDVARANGLRIKRLRSDQRGEYTGKPFRQFCAENGIKQEFSAVYTPQRNGVAERSWRSILEVARASMVTADMGHRYCAEAVRSAVYYLNRAPTRPHNGGTPYEKWNGETPKLDHLRVFGCMVCVMLQLQQRGQLDDKAWTGVFLGYDVDSPSYRIYNPKNKSVQLSRKVRYDEEDF 666
D AGP D S GG R+ + F+DD+SR VY L++KS+ L K+F+ V + +G +K LRSD+ GEYT F F E+GI + + YTPQ+NGVAER R+IL++AR+ + + + AEAVR AVY LNR PT+ TP E W+G+ P + HL++FGC+ + Q R +LDD+ +F+GYD S +YR YNP K V +SR V +DE D+
Sbjct: 849 DLAGPFDIPSLGGNRYYLTFIDDFSRRSWVYILKEKSETLDKFKEFKAMVEKQSGYYVKILRSDRGGEYTANLFEDFVKEHGIIHQLTVRYTPQQNGVAERKNRTILDLARSMVKGKHLPRNFWAEAVRCAVYLLNRCPTKSVRYMTPNEAWSGQKPGVGHLKIFGCIAYSHVPEQLRKKLDDRGEKCIFIGYDERSKAYRFYNPLTKKVIISRDVEFDEADY 1071
BLAST of mRNA_H-paniculata_contig24854.6750.1 vs. uniprot
Match: A0A151TPH7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Cajanus cajan TaxID=3821 RepID=A0A151TPH7_CAJCA) HSP 1 Score: 177 bits (448), Expect = 7.350e-50 Identity = 91/220 (41.36%), Postives = 139/220 (63.18%), Query Frame = 1
Query: 1 DRAGPV-DKSFGGCRFAIIFVDDYSRIRKVYTLRKKSKALWALKKFERDVARANGLRIKRLRSDQRGEYTGKPFRQFCAENGIKQEFSAVYTPQRNGVAERSWRSILEVARASMVTADMGHRYCAEAVRSAVYYLNRAPTRPHNGGTPYEKWNGETPKLDHLRVFGCMVCVMLQLQQRGQLDDKAWTGVFLGYDVDSPSYRIYNPKNKSVQLSRKVRYDE 657
D GP+ S R+ I+F+DD+SR+ VY +++KS+ LKKF+ V + +G +IK LRSD+ EYT F +FC + GI+Q+ + Y+PQ+NGV+ER R+++E+AR+ + + + + AE V +AVY LNR PTR T E W+G+ P HLRVFG + + + ++R +L+DK G+FLGY + S YR+YN + K + +SR V DE
Sbjct: 103 DICGPMRTSSLHNNRYFILFIDDFSRMTWVYFIKEKSEVFGILKKFKTLVEKQSGKQIKVLRSDRGKEYTSHEFDKFCEDEGIEQKLTVSYSPQQNGVSERKNRTVMEMARSMLKEKGLPNTFWAEVVYTAVYILNRCPTRTVQDKTLIEAWSGKKPSTKHLRVFGSICYIHVLEEKRHKLEDKIVRGIFLGYSIQSKGYRVYNLQTKKLIISRDVEVDE 322
BLAST of mRNA_H-paniculata_contig24854.6750.1 vs. uniprot
Match: A0A5N6P097_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6P097_9ASTR) HSP 1 Score: 180 bits (456), Expect = 9.960e-50 Identity = 94/220 (42.73%), Postives = 135/220 (61.36%), Query Frame = 1
Query: 1 DRAGPVDKSF-GGCRFAIIFVDDYSRIRKVYTLRKKSKALWALKKFERDVARANGLRIKRLRSDQRGEYTGKPFRQFCAENGIKQEFSAVYTPQRNGVAERSWRSILEVARASMVTADMGHRYCAEAVRSAVYYLNRAPTRPHNGGTPYEKWNGETPKLDHLRVFGCMVCVMLQLQQRGQLDDKAWTGVFLGYDVDSPSYRIYNPKNKSVQLSRKVRYDE 657
D GP+ S GG +F + VDDYSR VY L+ K +A KKF+ V + N ++ LR+D+ GE+ K F QFC ++GIK++ +A YTPQ+NGV ER R+I+EV R+ + T ++ EAVR AVY LNR TR TPYE W G+ P + HLRVFGC+ V G+L D++ V+LG ++ S +YR+ NP+ + ++R V++DE
Sbjct: 221 DLCGPITPSIMGGNKFFFLLVDDYSRYMWVYLLKSKDEAFLNFKKFKATVEKENEHKVGTLRTDRGGEFGSKEFFQFCEDHGIKRQLTAPYTPQQNGVVERRNRTIMEVTRSFLKTMEVPETLWGEAVRHAVYILNRVSTRSVKDQTPYECWRGKKPVIHHLRVFGCVGYVKKVRVSLGKLSDRSTAMVYLGAEIGSKAYRMLNPRTGRICVTRDVKFDE 440
BLAST of mRNA_H-paniculata_contig24854.6750.1 vs. uniprot
Match: A0A2Z6LTJ1_TRISU (Integrase catalytic domain-containing protein n=2 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6LTJ1_TRISU) HSP 1 Score: 181 bits (460), Expect = 4.920e-49 Identity = 92/220 (41.82%), Postives = 136/220 (61.82%), Query Frame = 1
Query: 1 DRAGPV-DKSFGGCRFAIIFVDDYSRIRKVYTLRKKSKALWALKKFERDVARANGLRIKRLRSDQRGEYTGKPFRQFCAENGIKQEFSAVYTPQRNGVAERSWRSILEVARASMVTADMGHRYCAEAVRSAVYYLNRAPTRPHNGGTPYEKWNGETPKLDHLRVFGCMVCVMLQLQQRGQLDDKAWTGVFLGYDVDSPSYRIYNPKNKSVQLSRKVRYDE 657
D GP+ S R+ I+F+DD+SR+ VY +++KS+ KKF+ V + +G IK LRSD+ EY F +FC + GI+Q+ + Y+PQ+NG++ER R+++E+AR+ M + + + AEAV +AVY LNR PT+ TP E W G+ P HLRVFG + + + Q+R +L+DK G+FLGY S YRIYN + K + +SR V DE
Sbjct: 475 DVCGPMRTPSLNNSRYFILFIDDFSRMTWVYFIKEKSEVFGIFKKFKALVEKQSGKNIKMLRSDRGKEYNSHEFDKFCEDEGIEQQLTVAYSPQQNGMSERKNRTVMEMARSMMKDKGLPNTFWAEAVYTAVYILNRCPTKAVQDKTPIETWCGKKPSAKHLRVFGSICYIHVPKQKRHKLEDKTTKGIFLGYSTQSKGYRIYNLQTKKLDVSRDVEVDE 694
BLAST of mRNA_H-paniculata_contig24854.6750.1 vs. uniprot
Match: A0A061F4C8_THECC (Integrase catalytic domain-containing protein n=1 Tax=Theobroma cacao TaxID=3641 RepID=A0A061F4C8_THECC) HSP 1 Score: 175 bits (444), Expect = 5.580e-49 Identity = 89/221 (40.27%), Postives = 139/221 (62.90%), Query Frame = 1
Query: 1 DRAGPVD-KSFGGCRFAIIFVDDYSRIRKVYTLRKKSKALWALKKFERDVARANGLRIKRLRSDQRGEYTGKPFRQFCAENGIKQEFSAVYTPQRNGVAERSWRSILEVARASMVTADMGHRYCAEAVRSAVYYLNRAPTRPHNGGTPYEKWNGETPKLDHLRVFGCMVCVMLQLQQRGQLDDKAWTGVFLGYDVDSPSYRIYNPKNKSVQLSRKVRYDEE 660
D GP+D +SFGG ++ ++F+DDYS+ V+ L+ K + KKF+ +V +G I L +D+ GE+ F FC E GI++E SA YTP++NG A+R R+I+E+A + +V + +++ AEAV + Y LN PTR TPYE W G P + +LRVFGC+ +++ Q + +LD+K+ +FLGY S +YR+YN KN + +SR V ++E+
Sbjct: 159 DLCGPMDTESFGGSKYFLLFIDDYSQKIWVFFLKFKFETFDNFKKFKTEVENQSGCNINVLSTDRGGEFVSNEFNNFCEEQGIRRELSAPYTPKQNGAAKRKNRTIVEMATSLLVAKGLPNQFRAEAVATTAYLLNVFPTRAVLNCTPYEAWRGMRPWVSYLRVFGCIAYALVKSQTQHKLDEKSEKCIFLGYSSQSKAYRLYNSKNGKIIISRDVIFNED 379 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig24854.6750.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24854.6750.1 >prot_H-paniculata_contig24854.6750.1 ID=prot_H-paniculata_contig24854.6750.1|Name=mRNA_H-paniculata_contig24854.6750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=241bp DRAGPVDKSFGGCRFAIIFVDDYSRIRKVYTLRKKSKALWALKKFERDVAback to top mRNA from alignment at H-paniculata_contig24854:487..1209- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig24854.6750.1 ID=mRNA_H-paniculata_contig24854.6750.1|Name=mRNA_H-paniculata_contig24854.6750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=723bp|location=Sequence derived from alignment at H-paniculata_contig24854:487..1209- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig24854:487..1209- >mRNA_H-paniculata_contig24854.6750.1 ID=mRNA_H-paniculata_contig24854.6750.1|Name=mRNA_H-paniculata_contig24854.6750.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1446bp|location=Sequence derived from alignment at H-paniculata_contig24854:487..1209- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |