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Homology
BLAST of mRNA_H-paniculata_contig24631.6680.1 vs. uniprot
Match: D7FS06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS06_ECTSI) HSP 1 Score: 259 bits (663), Expect = 8.470e-73 Identity = 141/232 (60.78%), Postives = 170/232 (73.28%), Query Frame = 1
Query: 1 LQRPRSVVEFKEHKCKCHLLWETPTRLLVGWGDTVMVLQLLVREPEYYRAAAVASXXXXXXXXXXXXXXXXXXSAALAAGNRRTSVPLTSP--GGLPMAVIGTPTAVAPALPEAPERYSQIVTIWQADCLVCGLSPFDPDTLVLLGYPVDEMIDDXXXXXXXXXXXXDGDDVEKGGAKFQPEVQLVTRSTGEVISADTLPLKGWETAAAGDLLLRSTCFSASYYRQDKESAT 690
+ +PRS+V+FKEH+C+CH+LWETPTRLLVGWGDTVMVLQ+LVREP+Y R +++ + + NRRTSVPLT+P GGLPMAVIG PTA AP EAPERY+QIV +WQ+DCL+CGLSPFD DT+VLLG+PV+E XXXXXXX G+ V G FQPEVQLV R +GEVISADT+PL+GWE A AG LLLRSTC+S S Y+ D+E AT
Sbjct: 222 VDKPRSLVDFKEHECRCHMLWETPTRLLVGWGDTVMVLQILVREPKYQRGGSLSPMKQPHLSPQGG-------NGSAGDSNRRTSVPLTNPIGGGLPMAVIGAPTAAAPVALEAPERYTQIVAVWQSDCLICGLSPFDSDTVVLLGFPVEEXX-------XXXXXXXXGEGVVAKGV-FQPEVQLVKRQSGEVISADTVPLRGWEHAGAGQLLLRSTCWSISSYKPDREGAT 438
BLAST of mRNA_H-paniculata_contig24631.6680.1 vs. uniprot
Match: A0A6H5KF08_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF08_9PHAE) HSP 1 Score: 199 bits (507), Expect = 1.500e-55 Identity = 113/192 (58.85%), Postives = 136/192 (70.83%), Query Frame = 1
Query: 1 LQRPRSVVEFKEHKCKCHLLWETPTRLLVGWGDTVMVLQLLVREPEYYRAAAVASXXXXXXXXXXXXXXXXXXSAALAAGNRRTSVPLTSP--GGLPMAVIGTPTAVAPALPEAPERYSQIVTIWQADCLVCGLSPFDPDTLVLLGYPVDEMIDDXXXXXXXXXXXXDGDDVEKGGAKFQPEVQLVTRSTGE 570
+ +PRS+V+FKEH+C+CH+LWETPTRLLVGWGDTVMVLQ+LVREP+Y R +++ + + NRRTSVPLT+P GGLP+AVIG PTA AP EAPERY+QIV +WQ+DCL+CGLSPFD DT+VLLGYPV+ XXXXXXXX V KG FQPEVQLV R +GE
Sbjct: 144 VDKPRSLVDFKEHECRCHMLWETPTRLLVGWGDTVMVLQILVREPKYQRGGSLSPMRQPHHSPPGG-------NGSAGDNNRRTSVPLTNPIGGGLPIAVIGAPTAAAPVALEAPERYTQIVAVWQSDCLICGLSPFDSDTVVLLGYPVEXXXXXXXXXXXXXV-------VVKG--VFQPEVQLVKRQSGE 319
BLAST of mRNA_H-paniculata_contig24631.6680.1 vs. uniprot
Match: A0A836CBT2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBT2_9STRA) HSP 1 Score: 102 bits (254), Expect = 7.160e-19 Identity = 79/249 (31.73%), Postives = 109/249 (43.78%), Query Frame = 1
Query: 4 QRPRSVVEFKEHKCKCHLLWETPTRLLVGWGDTVMVLQLLVREPEYYRAAAVASXXXXXXXXXXXXXXXXXXSAALAAGNRRTSVPLTSPGGLPMAVIGTPTAVAPALPEAPERYSQIVTIWQADCLVCGLSPFDPDTLVLLGYPVDEMIDDXXXXXXXXXXXXDGDDVEKGGAKFQPEVQLVTRSTGE---------------------VISADTLPLKGWETAAAGDLLLRSTCFSASYYRQDKESA 687
+ P S V+ K + L WE+ + LL+ WGDT ++LQ+ +RE +AA RTS TS + GT A AP+R ++I +WQ+DCL+CG+SPFD DTLVLLGYPV + + + + A PEVQLV R+TGE V++ADTLPL GW+ AG + ST +S R + A
Sbjct: 371 EEPVSAVD----KPRGALHWESDSCLLMAWGDTFLILQVGIREGS---------------------------TAAGLLERVRTSSEGTS-------LAGTLEGGVVAARMAPKRVAEITALWQSDCLICGVSPFDADTLVLLGYPVPQSLAE----------------AREAAAAAGPEVQLVRRATGENPGRRVVGHAELVHQLEELRSVLAADTLPLNGWQNNLAGHYCMASTSWSPGAIRWPRGKA 565
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 192.6 |
| Seed ortholog evalue | 1.8e-46 |
| Seed eggNOG ortholog | 2880.D7FS06 |
| Preferred name | VPS41 |
| KEGG ko | ko:K20184 |
| KEGG Pathway | ko04138,map04138 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005798,GO:0005829,GO:0005856,GO:0006403,GO:0006508,GO:0006605,GO:0006623,GO:0006624,GO:0006725,GO:0006726,GO:0006727,GO:0006807,GO:0006810,GO:0006886,GO:0006887,GO:0006892,GO:0006895,GO:0006897,GO:0006903,GO:0006906,GO:0006914,GO:0006950,GO:0006996,GO:0007033,GO:0007034,GO:0007041,GO:0007154,GO:0007220,GO:0007275,GO:0007568,GO:0008017,GO:0008055,GO:0008092,GO:0008104,GO:0008150,GO:0008152,GO:0008270,GO:0008333,GO:0008340,GO:0008593,GO:0009056,GO:0009058,GO:0009267,GO:0009605,GO:0009606,GO:0009628,GO:0009629,GO:0009630,GO:0009966,GO:0009968,GO:0009987,GO:0009991,GO:0010008,GO:0010259,GO:0010467,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0015031,GO:0015630,GO:0015631,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016236,GO:0016237,GO:0016482,GO:0016485,GO:0017016,GO:0017137,GO:0018130,GO:0019438,GO:0019538,GO:0019748,GO:0019899,GO:0022406,GO:0022411,GO:0023051,GO:0023057,GO:0030135,GO:0030136,GO:0030897,GO:0031090,GO:0031267,GO:0031338,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031902,GO:0031982,GO:0032258,GO:0032501,GO:0032502,GO:0032879,GO:0032889,GO:0032940,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033060,GO:0033227,GO:0033263,GO:0033365,GO:0033554,GO:0034058,GO:0034613,GO:0034727,GO:0035542,GO:0042144,GO:0042440,GO:0042441,GO:0042594,GO:0042802,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043254,GO:0043324,GO:0043473,GO:0043474,GO:0043621,GO:0043933,GO:0044087,GO:0044088,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044550,GO:0044804,GO:0045055,GO:0045184,GO:0045324,GO:0045746,GO:0046148,GO:0046152,GO:0046158,GO:0046483,GO:0046872,GO:0046903,GO:0046907,GO:0046914,GO:0048066,GO:0048069,GO:0048193,GO:0048278,GO:0048284,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051236,GO:0051604,GO:0051640,GO:0051641,GO:0051648,GO:0051649,GO:0051650,GO:0051656,GO:0051716,GO:0060548,GO:0060627,GO:0061024,GO:0061025,GO:0061919,GO:0065007,GO:0070727,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072594,GO:0072665,GO:0072666,GO:0090174,GO:0097352,GO:0097576,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098805,GO:0098852,GO:0099022,GO:0099023,GO:0140056,GO:1901360,GO:1901362,GO:1901564,GO:1901576,GO:1902500,GO:1902774 |
| EggNOG free text desc. | regulation of SNARE complex assembly |
| EggNOG OGs | KOG2066@1,KOG2066@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko04131 |
| Exons | 5 |
| Model size | 1748 |
| Cds size | 606 |
| Stop | 1 |
| Start | 1 |
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig24631.6680.1 >prot_H-paniculata_contig24631.6680.1 ID=prot_H-paniculata_contig24631.6680.1|Name=mRNA_H-paniculata_contig24631.6680.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp
MVLQLLVREPEYYRAAAVASSSSSPFNNGNGNGNGNGNSAALAAGNRRTS
VPLTSPGGLPMAVIGTPTAVAPALPEAPERYSQIVTIWQADCLVCGLSPF
DPDTLVLLGYPVDEMIDDDDDDDDDDDDNGDGDDVEKGGAKFQPEVQLVT
RSTGEVISADTLPLKGWETAAAGDLLLRSTCFSASYYRQDKESATMGEFE
T* back to topmRNA from alignment at H-paniculata_contig24631:578..3700+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig24631.6680.1 ID=mRNA_H-paniculata_contig24631.6680.1|Name=mRNA_H-paniculata_contig24631.6680.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3123bp|location=Sequence derived from alignment at H-paniculata_contig24631:578..3700+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTCAAAGGCCCCGATCAGTGGTGGAGTTTAAGGAACATAAATGTAAATG
CCACCTCCTCTGGGAAACCCCGACGGTGAGATGAGGCGTGGTGCACTCTG
CTGTGCTACACTACCAGTCGTTCCTCAGCTTCATTTTGATAGACGATAGT
CTTTTTCGGCGATTAAGCGTCACTTGGTATGGTTTTAAAGACGTGGGACA
ATTGAACACAGCGCCCACCGAGCGCGCCGTTTCGGTAGCGTGTATGCCGC
TGAGTGATGAAGCGAGGAAATCCGACGGAAAAGCACACGGTGATCGAAAC
TTGTTTTTTTTTTGGTTGTGGATCATGGGATCCGAACTTACTGTCTGTCT
TGCTCTCTACAAGTATCCAACCCCCTCCCCTCGCCCCCCCCTTTCCCCCC
GGTCGACCTTGCCACTAGTTCTCTCTATCGGGCATGATAAAAAAGACATT
CTCCCTCATAGTATTTTTGTTCGTCTTGTCTTTCATCTTTCTTGGACTAA
TCCAACCATGACATCACACACAGCGCCTCCTGGTGGGCTGGGGCGATACG
GTTATGGTCCTGCAATTATTGGTCCGAGAACCTGAATACTATCGGGCAGC
AGCAGTGGCATCATCGTCATCATCACCATTCAATAACGGTAACGGCAATG
GCAACGGCAACGGAAATTCGGTCATGAAAACCCCGCCCTCCGCCGCCTCT
GCCATCGCACAGGCCGCGCTAGCGGCCGGCAATCGGCGCACCTCCGTACC
GCTCACGAGCCCGGGGGGATTGCCGATGGCTGTGATCGGCACGCCGACGG
CCGTCGCTCCCGCGTTGCCAGAGGCGCCCGAGAGGTACTCGCAGATCGTG
ACCATATGGCAGGCGGATTGCCTCGTGTGCGGGCTGTCGCCTTTCGACCC
CGACACGCTGGTGCTACTGGGGTACCCCGTGGACGAGATGATCGACGACG
ATGATGACGATGATGATGATGATGATGATAATGGTGATGGTGATGACGTT
GAGAAAGGAGGAGGTAATGACGACAGCGAGGGCGAAGGGAGAGGGGGAGG
GCGCCGAGGAGGAGATGAGGAGGCTGGGGTTTTTGTGTTTGGCGGGGAAG
GGAGTGGAGGTGGGCGGGCGGGGCTAGGGTTGGAGAGCGATAGTGGGAGG
GGTGTGGGAGCAAAGTTTCAGCCGGAGGTGCAGTTGGTGACGAGAAGCAC
TGGCGAGGTGGGGATCGCGAGGAGAGGGGGGGGGAGGGGGTATCACTTCC
ATGTGCACTGTAGGTAAAGCATGAAACAGGCCTCGTAGGAACGACTCACG
CCATGGGGATTTTGTTCTTAAACAACGTCTCATTTCACTAAGTGAAATTG
TTCTTATTGTAGCAAATGAAGCTCATATGATAGCTGCGATCACTTGTACT
CATGTTGAGGTTATGCTGGTGACTTTTAGTCTGCGATTTTTATACACTGG
TCAGCAAAATGTACTTTAAAAATGAGAGTGGGGTTTACTTGGCAAATATA
AATACCTTAGTTACAAGTTAACCAACTTGCCACAGCCAGTAGGTCTATAG
CGCTCATATAATATCTCCCATCATATCCACGTGTTGAGGCTCTGCAGCTG
GCCTTCAAGTTTCAGTTATGTGGTACACTTGACAGCATTTTTTTTAATTA
ATAAGGGGTGGAGGTTGTTCTTGTTTCACACGCCGTAGTTATTTAGACCG
CGTACCACGCGTTCTCCGGACGATGGAGCGGGGGAGGAAAGAGGGGGGTG
GGTGGGGGGGTATCTTGAGAACGGAATACGTAGTACTAGGTATCCGACTT
GGTCTATTTGCGAGTAGGTTTGTAGCATGTTATGGTTAAACGTTTTTTTC
ACTTGATGAATGTACAGGATTGGTCCTGAAGGGAGAGTCCGAAATTAGTG
GTGCGGCAGGGAGTAACATATCGTGGATTTTTTTTTTTTTTTCAGGTGAT
TTCGGCGGATACGTTGCCTCTCAAGGGCTGGGAGACGGCCGCGGCGGGTG
ACTTGCTCCTTCGCTCGACGTGTTTTTCGGCTTCCTATTACAGGCAGGAT
AAGGAGAGTGCGACGATGGGTGAGTTTGAGACATAGCAGGTAGACAGGCA
GATGGACAGACGCATGGGTAGATACGTAGATGGACAATTAGGCAGATATA
CTAAAAGACAGATGGACTGACAGATAGATGGATTGATAGGCAGATAATCC
GACAGGAAAATAAATAGATGGATGCTTAGGCCAACAGATAGATAGATGGA
GGGACAGATAGACAGACAGATAGTTAGACTGACAGACAGACAAAAATCAG
CCTGATAGTTTGTCTCATCTTAGTATTTGACTGTGCACAGCATTTGGTTT
GCCGTTGCCATTGTTGTTGTTGTTGTTGTTCATTTTCCGTGCGTGTGTCT
GTATTTGTGTTTGTGTGTGCTGATAAGACGAATGACTAAAATTATCGCAC
TTCCTCTTGTTTCCAAACCCGTCTGGCCTTGAACGCTGTAAATTGAGTAA
CTTTTAAGGTGCGTTTTCTTTTTCGTGTTGGTTTCCCTGATGCTGATAGT
GTTCCGAGTATCTTACAAAGCCTAATTATACGTATATATATATATATATA
CATATTGATTGTTGTTGTTTTGTTAACGTCGGGGTCCGCTAGGGTTACCG
TTGTCGTCCCACTCCCCGTTTGATGGAGGGATTGCGAACAGAAGGCCCTA
ACGGTTGTTGGAACACATAAAAAAAATGTTTGAATAGGCGAGCGTTGAGG
TAGGTAGAGTAGGCGGAAAAAATGGCTACGTTTGATAACAACGTAGAAAA
GAGCGATTGGTCATTATCCATCGGTAATCGATCTGATGAAGAGAAAGCTC
CGTCCTCCCTAAGACGTGTGGTCAATAGTCTAACGATTACGTCATGTGAA
ACATGAAGGCGCCTCCCCCCCCTAATTGGTTTAGTTTTGGTGATGAGTGT
ATTAGTATGTAACTGAAGATTGAAGAGCAGCTGCATAACCTCAACGTGGG
TACAGGGGAGTTATGATGATGAGCTTGAGAGCTATAGTCCGACTAACTGT
GGCAGGATTGACTTACGAATGAGAATTTCAGTTAGCAAGATGAAAGGTTT
ATAAATATTTTCAGTGTCTGCCG back to topCoding sequence (CDS) from alignment at H-paniculata_contig24631:578..3700+ >mRNA_H-paniculata_contig24631.6680.1 ID=mRNA_H-paniculata_contig24631.6680.1|Name=mRNA_H-paniculata_contig24631.6680.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig24631:578..3700+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCCTGCAATTATTGGTCCGAGAACCTGAATACTATCGGGCAGCAGC
AGTGGCATCATCGTCATCATCACCATTCAATAACGGTAACGGCAATGGCA
ACGGCAACGGAAATTCGATGGTCCTGCAATTATTGGTCCGAGAACCTGAA
TACTATCGGGCAGCAGCAGTGGCATCATCGTCATCATCACCATTCAATAA
CGGTAACGGCAATGGCAACGGCAACGGAAATTCGGCCGCGCTAGCGGCCG
GCAATCGGCGCACCTCCGTACCGCTCACGAGCCCGGGGGGATTGCCGATG
GCTGTGATCGGCACGCCGACGGCCGTCGCTCCCGCGTTGCCAGAGGCGCC
CGAGAGGTACTCGCAGATCGTGACCATATGGCAGGCGGATTGCCTCGTGT
GCGGGCTGTCGCCTTTCGACCCCGACACGCTGGTGCTACTGGGGTACCCC
GTGGACGAGATGATCGACGACGATGATGACGATGATGATGATGATGATGA
TAATGGTGATGGTGATGACGTTGAGAAAGGAGGAGGCCGCGCTAGCGGCC
GGCAATCGGCGCACCTCCGTACCGCTCACGAGCCCGGGGGGATTGCCGAT
GGCTGTGATCGGCACGCCGACGGCCGTCGCTCCCGCGTTGCCAGAGGCGC
CCGAGAGGTACTCGCAGATCGTGACCATATGGCAGGCGGATTGCCTCGTG
TGCGGGCTGTCGCCTTTCGACCCCGACACGCTGGTGCTACTGGGGTACCC
CGTGGACGAGATGATCGACGACGATGATGACGATGATGATGATGATGATG
ATAATGGTGATGGTGATGACGTTGAGAAAGGAGGAGCAAAGTTTCAGCCG
GAGGTGCAGTTGGTGACGAGAAGCACTGGCGAGCAAAGTTTCAGCCGGAG
GTGCAGTTGGTGACGAGAAGCACTGGCGAGGTGATTTCGGCGGATACGTT
GCCTCTCAAGGGCTGGGAGACGGCCGCGGCGGGTGACTTGCTCCTTCGCT
CGACGTGTTTTTCGGCTTCCTATTACAGGCAGGATAAGGAGAGTGCGACG
ATGGGTGAGTTTGAGACATAGGTGATTTCGGCGGATACGTTGCCTCTCAA
GGGCTGGGAGACGGCCGCGGCGGGTGACTTGCTCCTTCGCTCGACGTGTT
TTTCGGCTTCCTATTACAGGCAGGATAAGGAGAGTGCGACGATGGGTGAG
TTTGAGACATAG back to top
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