mRNA_H-paniculata_contig2409.6521.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2409.6521.1
Unique NamemRNA_H-paniculata_contig2409.6521.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2409.6521.1 vs. uniprot
Match: A0A6H5LCY2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCY2_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.710e-9
Identity = 59/169 (34.91%), Postives = 82/169 (48.52%), Query Frame = 3 
Query:  363 YKGSKAGRLSADV-QLSYRVQITPVLVAHKSKAYICHRGGPWTGRATQSETGKKGSRLPEIEEMSAIVSDKYPPPSTCLHPTLAQYCLNRYADPKDPVLVTSGEGDNLADLVLGSGRLHPAHMENSDKLDLVNERVIAACNEAVKKGLFVTVM-MGVPIVIGPSTLPVN 863
            Y    AGR   D  Q  Y  Q   VLVAHK+  +  H  GP               R+ ++E +  I+S K+P  +T L P++A + LNR+    D VLV++ E +NLA LVL SGR   A + +  K   V  +V +A   A+  G F  +   GVP+  G S LP  
Sbjct:  627 YLNKLAGRTPTDSKQRKYTRQTASVLVAHKTGEHTSHASGPQFDPP----------RISQLEAVGIIISQKHPS-ATFLAPSMADHLLNRFTSAGDKVLVSAFEDNNLASLVLTSGRRLFALVGDPAKAVSVGRQVKSALATAMTAGWFKALANAGVPL--GGSVLPAG 782
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2409.6521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5LCY2_9PHAE4.710e-934.91Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2409contigH-paniculata_contig2409:7951..10975 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1980
Cds size372
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2409.6521.1prot_H-paniculata_contig2409.6521.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2409 9011..9545 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929692.7583785-UTR-H-paniculata_contig2409:7950..90101622929692.7583785-UTR-H-paniculata_contig2409:7950..9010Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2409 7951..9010 -
1691480969.6075478-UTR-H-paniculata_contig2409:7950..90101691480969.6075478-UTR-H-paniculata_contig2409:7950..9010Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2409 7951..9010 -
1622929692.7999754-UTR-H-paniculata_contig2409:9545..97511622929692.7999754-UTR-H-paniculata_contig2409:9545..9751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2409 9546..9751 -
1691480969.6380167-UTR-H-paniculata_contig2409:9545..97511691480969.6380167-UTR-H-paniculata_contig2409:9545..9751Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2409 9546..9751 -
1622929692.810825-UTR-H-paniculata_contig2409:10633..109751622929692.810825-UTR-H-paniculata_contig2409:10633..10975Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2409 10634..10975 -
1691480969.648045-UTR-H-paniculata_contig2409:10633..109751691480969.648045-UTR-H-paniculata_contig2409:10633..10975Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2409 10634..10975 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929692.7726326-CDS-H-paniculata_contig2409:9010..93021622929692.7726326-CDS-H-paniculata_contig2409:9010..9302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2409 9011..9302 -
1691480969.6178186-CDS-H-paniculata_contig2409:9010..93021691480969.6178186-CDS-H-paniculata_contig2409:9010..9302Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2409 9011..9302 -
1622929692.7865212-CDS-H-paniculata_contig2409:9465..95451622929692.7865212-CDS-H-paniculata_contig2409:9465..9545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2409 9466..9545 -
1691480969.627454-CDS-H-paniculata_contig2409:9465..95451691480969.627454-CDS-H-paniculata_contig2409:9465..9545Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2409 9466..9545 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2409.6521.1

>prot_H-paniculata_contig2409.6521.1 ID=prot_H-paniculata_contig2409.6521.1|Name=mRNA_H-paniculata_contig2409.6521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=124bp
MSAIVSDKYPPPSTCLHPTLAQYCLNRYADPKDPVLVTSGEGDNLADLVL
GSGRLHPAHMENSDKLDLVNERVIAACNEAVKKGLFVTVMMGVPIVIGPS
TLPVNVQRGGYDRGGARKAGGGA*
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mRNA from alignment at H-paniculata_contig2409:7951..10975-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2409.6521.1 ID=mRNA_H-paniculata_contig2409.6521.1|Name=mRNA_H-paniculata_contig2409.6521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3025bp|location=Sequence derived from alignment at H-paniculata_contig2409:7951..10975- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CCACACGGAACCAACGTTGCCGACATTGAGATGGCTTTCCGAAACTGACT
TACTCACGTCGTGATTTTGCCCCACTTGTCCTCGTAGCCACGAAGCTGAG
CCTCCATCTTCACTTTGCCATCGGTTGGATCGCTCATTACTCGAAAAGCC
TCATGCTTGGTGATGTGTGGGATCGCGAATATGCTGGGACCCACAAGATC
TTGAAAGTTGGCGCAGTTGTTGAGGTGCGTCATCTCGAGCGGGAAAGAGG
ACTTATACGACGCCTTGACGAGTTCTCCGAGGTGAGTACGCGTAAAAGCG
TTACGCGGCCTGAGATGAACGCCAACCTTGGGAAATCACGGGGTGAACAG
GCAAAATGCCGCGAGTACAGTTTCGCATGTTCAGCAACAGCAACGGGTAA
AAGTCAAGCGGTAACGCCTCGGGTGTGCAGCCACGCTTACACCCTCGACC
GCTGCCTGCCTTTTCGGTACAACTATATCATATGCCAAATCCTTATACTA
TTGACGACCATTTCATAGGGGAATGGATAGAATAAAGTGGCGTGGGAAAC
GGCAGTCTGCGGCATCAGGTAACTCGCTTTGAAAAAACCTGGTCGATCTC
TGACGGGCATGCTGACAACGACAGCGCGCTCGTCGTACAATCTCCATCGC
AACATCTCGTTAGGTGCGGGCTCGCGTCAATCTATTTTCAGAACCAATCT
TAGTCTTGAAGCTCACGTTCTGATGTGGCGGGGGAGGAAAATTAATCGAT
CCGAATAAGCCGCGAGCACTTGTGGCTCTTGAACAATCGGGAAAAAGTAT
TGGCCAATGATCATCCGCGCGAAATTAATTTTTTCCGTTTAGAAATCTAA
GAATAGAATGAAAGTTTCTGATTGCGCAAGATATTGACCTGTTGGAGCCG
GCATGACTGTACTTTGTGTGATGACGGAAAGTTTCTGCTGCTTTTTGGCC
GGATGGATCAAGGGGGTGATCAATTTTCGGTTAGATTTAAAATGCACGGT
TTGATCGATGTGTTGGCGACGATCGTAGTACAATTGTGCGTCTGTGCACG
TCCTGGCCTTTTCGTGTGGCTTCTAGATGAGACGAGAGTGAACAACATCT
TTTTTGCAAGATTTCTCACGACCATGTCTATTGCCGTGTGGGGCGTGTAC
TCGCCCTCTTCTCTACCGCCCTTCTTGCGCTTTATCTTGAAAGCATGTTC
GAAGGCGCCGACTTGAAGCTTGAGGCGACTCCGATCTATTCTAATACAAG
GGCAGCAAGGCGGGCCGGCTGTCGGCCGATGTCCAGCTTTCCTACCGTGT
TCAAATCACGCCCGTCCTCGTCGCCCACAAGAGTAAAGCCTACATCTGTC
ACAGGGGTGGCCCTTGGACCGGTCGTGCCACGCAATCGGAGACTGGAAAG
AAAGGCTCCAGGCTGCCGGAAATCGAGGAGATGAGCGCTATCGTGTCCGA
CAAGTACCCTCCCCCCTCTACCTGTCTTCATCCCACACTAGCGCAGTACT
GCTTGAATCGGTGAGAGTTATCAGCAGAATGCGAATCGCGGTTGTGATAG
TACTGCCGCTCTCGTTTCTCAATGGCTCATGATCGCTGGTGATGTCCAAT
TCTAAACCACATGCGTCCACACTTCTTTCCTCCCTCATTACGAAGCTAAC
TAATCCCTTTTGTTTCCAACCAGGTATGCGGATCCAAAGGACCCTGTGCT
GGTCACTTCGGGGGAGGGAGACAACCTCGCTGATCTTGTATTGGGAAGCG
GGAGATTGCACCCCGCGCACATGGAGAACAGTGACAAATTGGACCTTGTC
AATGAGCGTGTAATCGCTGCATGCAATGAGGCGGTGAAAAAGGGGCTGTT
CGTGACTGTCATGATGGGTGTGCCTATTGTGATTGGTCCATCTACTCTTC
CAGTCAATGTCCAACGTGGAGGATACGACAGAGGCGGAGCTCGCAAAGCT
GGTGGAGGGGCGTGATGATACTGTTTCGCTGCAGGAACATCAGCGAGCCT
TGGCGAAAAAGACTCCCGCACAGTTTGGTTTCGATGTCAAGGTGTGCCTG
TTCTTATATTATTCGTACGACCTGAAAATTATAGTGATCATGACGGTCAA
GCGGGAAGGCCACTGTGTGCTGGTGGTATAGTTCTCCCAAGTTGCGTGAG
GATCCGCTTGCCCTGCGCGCTCCCACCTGCTCCATCAACACCTCGTGAAT
CATGTATATGCTGCCGTGCGAACCAATGCGGGTATTGCCTCGGCGCAGGA
ATTAGGAACGCATGGATACGGACTTTTCGCTGCGAAGGATCTTGACGCCA
GCTATATTGGCTTGGCGGTGGAGGGATTCTTCCAAGTATTTGACAACGTG
GACCAGGTCCTGAAGAGAGTGAAGCGTAACAGAGTGCCAAGATATGCCGT
TTGCATTACTGATGGGCTGCGTAAAGTCTGTGCCGCTAACGACTCTGTGA
AGGAAGGGGCATCATTATGGCTTAAGCCAGACTCGACCAATCCATGATTC
TACGCCAATTCGTCGTGTCGTTCCCCTACAGGCCAAGAAGACGTGTCAAC
AACCTTCGCACTACTCACAAGTAGGCCGATTTTCGTATCAGCGCAGAGGG
GCTTGAGTTGCTTAGCGTTGCCAGTAACTTTGCGTCGTTCGGCGTAGCCT
CAGACGTGAAGAAGGATCCTGGGCTGTTTGTTTCGTACCCGTTGCCGGGG
AACGACGTCGACCGGAATGAGTGGGATGATGAGAGGAGCGAAGAAGAGTC
GGATGATGCAGAGGAAGATGAACCAACGGCGGATGCTCCAAGATAAGCGG
CGGAAGGATGACTGAGTCATGTCTGAAACAACTTAGACTGGGTACCTTCT
AGATGTTGTCAAGAGCGATGACCGGCGTTGCTGTGGGTGGTGATGATGGT
GTCATTGTTATCTGTCACCGCTCTTGTTTTTGCACAGCACACTTGCATTG
CATTCGCCGCCCGTTGGTTACCTGAGATAGAGGTCGAATATTGCCCTCAT
TAGCTGCTCAACCCATCGACTTCAT
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Coding sequence (CDS) from alignment at H-paniculata_contig2409:7951..10975-

>mRNA_H-paniculata_contig2409.6521.1 ID=mRNA_H-paniculata_contig2409.6521.1|Name=mRNA_H-paniculata_contig2409.6521.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=744bp|location=Sequence derived from alignment at H-paniculata_contig2409:7951..10975- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGCGCTATCGTGTCCGACAAGTACCCTCCCCCCTCTACCTGTCTTCA
TCCCACACTAGCGCAGTACTGCTTGAATCGATGAGCGCTATCGTGTCCGA
CAAGTACCCTCCCCCCTCTACCTGTCTTCATCCCACACTAGCGCAGTACT
GCTTGAATCGGTATGCGGATCCAAAGGACCCTGTGCTGGTCACTTCGGGG
GAGGGAGACAACCTCGCTGATCTTGTATTGGGAAGCGGGAGATTGCACCC
CGCGCACATGGAGAACAGTGACAAATTGGACCTTGTCAATGAGCGTGTAA
TCGCTGCATGCAATGAGGCGGTGAAAAAGGGGCTGTTCGTGACTGTCATG
ATGGGTGTGCCTATTGTGATTGGTCCATCTACTCTTCCAGTCAATGTCCA
ACGTGGAGGATACGACAGAGGCGGAGCTCGCAAAGCTGGTGGAGGGGCGT
GAGTATGCGGATCCAAAGGACCCTGTGCTGGTCACTTCGGGGGAGGGAGA
CAACCTCGCTGATCTTGTATTGGGAAGCGGGAGATTGCACCCCGCGCACA
TGGAGAACAGTGACAAATTGGACCTTGTCAATGAGCGTGTAATCGCTGCA
TGCAATGAGGCGGTGAAAAAGGGGCTGTTCGTGACTGTCATGATGGGTGT
GCCTATTGTGATTGGTCCATCTACTCTTCCAGTCAATGTCCAACGTGGAG
GATACGACAGAGGCGGAGCTCGCAAAGCTGGTGGAGGGGCGTGA
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