mRNA_H-paniculata_contig2401.6498.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig2401.6498.1 vs. uniprot
Match: A0A6H5JGF9_9PHAE (Complex1_LYR_dom domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGF9_9PHAE) HSP 1 Score: 106 bits (265), Expect = 1.640e-24 Identity = 59/88 (67.05%), Postives = 69/88 (78.41%), Query Frame = 1
Query: 217 MSGRASGVQREVTHLYRRVLRAARLKDSESNSTSTSDLVKTEFREQATSVGRTDFRTIEHLIRAGNKKLKLLSMPGMRAAEALTVNHR 480
MS R SGVQREV LYR +LRAAR+KD + ST++LV+ EFR QA SV RTDFRTIEHL+RAGNKKLKLL MPG++AA +TV R
Sbjct: 1 MSARLSGVQREVNKLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVARTDFRTIEHLLRAGNKKLKLLKMPGVKAAAGITVVRR 88
BLAST of mRNA_H-paniculata_contig2401.6498.1 vs. uniprot
Match: D7FX23_ECTSI (Heat shock protein, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX23_ECTSI) HSP 1 Score: 102 bits (255), Expect = 1.560e-22 Identity = 65/120 (54.17%), Postives = 80/120 (66.67%), Query Frame = 1
Query: 142 FKTWTP*RRALNVAAETPQTEPTIDMS---GRASGVQ----REVTHLYRRVLRAARLKDSESNSTSTSDLVKTEFREQATSVGRTDFRTIEHLIRAGNKKLKLLSMPGMRAAEALTVNHR 480
+T T RRA +A T P I+ R+ G+Q REV LYR +LRAAR+KD + ST++LV+ EFR QA SVGRTDFRTIEHL+RAGNKKLKLL MPG++AA +TV R
Sbjct: 15 LETLTSKRRAAERSALTAVLSPYINADRERSRSVGIQSPTKREVNQLYRLLLRAARVKDGGEWAGSTTELVRAEFRAQAESVGRTDFRTIEHLLRAGNKKLKLLKMPGVKAAAGITVARR 134
BLAST of mRNA_H-paniculata_contig2401.6498.1 vs. uniprot
Match: I2CRH0_NANGC (Lyr family of fe s cluster biogenesis protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CRH0_NANGC) HSP 1 Score: 78.6 bits (192), Expect = 2.420e-14 Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1
Query: 226 RASGVQREVTHLYRRVLRAARLKDSESNSTSTSDLVKTEFREQATSVGRTDFRTIEHLIRAGNKKLKLLSMPGMRAAEALT 468
RASG+Q+EV LYRRVLRAAR+KD+ T L +T FRE ATSV R DF+ IE LIR G+K+LK L+MP + ++T
Sbjct: 5 RASGLQKEVLSLYRRVLRAARVKDAGKIDGGTYTLARTRFREDATSVSRMDFQKIEFLIRQGHKQLKYLNMPSVLRGASVT 85
BLAST of mRNA_H-paniculata_contig2401.6498.1 vs. uniprot
Match: A0A7S3Y3W0_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y3W0_HETAK) HSP 1 Score: 72.4 bits (176), Expect = 8.060e-12 Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1
Query: 226 RASGVQREVTHLYRRVLRAARLKD--SESNSTSTSDLVKTEFREQATSVGRTDFRTIEHLIRAGNKKLKLLSMPGMRAAEALT 468
R SG+Q+EV LYR+ LR AR KD S SN S + ++EFREQA+ V ++DF+TIEH+IR G K++KL +MPG + T
Sbjct: 34 RLSGLQQEVLALYRQCLRVARKKDLGSSSNVRSLYEYCRSEFREQASKVKKSDFQTIEHMIRHGKKQMKLAAMPGFQGMTHFT 116
BLAST of mRNA_H-paniculata_contig2401.6498.1 vs. uniprot
Match: A0A7S1ZYE5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZYE5_TRICV) HSP 1 Score: 61.2 bits (147), Expect = 5.750e-8 Identity = 40/99 (40.40%), Postives = 54/99 (54.55%), Query Frame = 1
Query: 226 RASGVQREVTHLYRRVLRAARLKDSESNST-------------------------STSDLVKTEFREQATSVGRTDFRTIEHLIRAGNKKLKLLSMPGM 447
R SG+QR+V LYR VLR A KD + S +T+ ++EFR++A S+ R DFRTIEH+IR G K++KLL MPG+
Sbjct: 6 RLSGLQRQVLALYRSVLREAARKDRSAASNRNDGGEYFLVLLSTDKCPSSPPGDATTTSYARSEFRKKAASIPRNDFRTIEHMIRWGQKQIKLLRMPGV 104
BLAST of mRNA_H-paniculata_contig2401.6498.1 vs. uniprot
Match: A0A5D6XGN7_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XGN7_9STRA) HSP 1 Score: 58.9 bits (141), Expect = 5.270e-7 Identity = 40/100 (40.00%), Postives = 55/100 (55.00%), Query Frame = 1
Query: 232 SGVQREVTHLYRRVLRAARLKDSE------------------SNSTSTSDLVKTEFREQATSVGRTDFRTIEHLIRAGNKKLKLLSMPGMRAAEALTVNH 477
SG+Q++V LYRR L+AAR KD+E +NS +T V+ FR+ A SV R DF IEHL+R G + LK+L M+AA ++H
Sbjct: 28 SGLQKQVLTLYRRALQAARRKDAELAASAPPTTPLDPSTANPTNSNATLAFVRERFRDDAGSVRRMDFNVIEHLLRKGERDLKMLER--MKAANFTRISH 125
BLAST of mRNA_H-paniculata_contig2401.6498.1 vs. uniprot
Match: A0A6U0URI4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A6U0URI4_9STRA) HSP 1 Score: 56.2 bits (134), Expect = 5.350e-6 Identity = 32/67 (47.76%), Postives = 47/67 (70.15%), Query Frame = 1
Query: 232 SGVQREVTHLYRRVLRAARLKDSESNSTSTSDLVKTEFREQATSVGRTDFRTIEHLIRAGNKKLKLL 432
SGVQ EV +LYR++LR A+ K ++ + +V+ +FRE A SV R++ R IEHL+R G KK++LL
Sbjct: 65 SGVQTEVLNLYRQLLRLAKAKGPDTYA-----MVRNKFREDARSVKRSEIRLIEHLVRQGKKKVRLL 126
BLAST of mRNA_H-paniculata_contig2401.6498.1 vs. uniprot
Match: A0A0W0DRB0_CANGB (Succinate dehydrogenase assembly factor 1, mitochondrial n=2 Tax=Candida glabrata TaxID=5478 RepID=A0A0W0DRB0_CANGB) HSP 1 Score: 53.9 bits (128), Expect = 8.480e-6 Identity = 33/78 (42.31%), Postives = 46/78 (58.97%), Query Frame = 1
Query: 217 MSGRASGVQREVTHLYRRVLRAARLKDSESNSTSTSDLVKTEFREQATSVGRTDFRTIEHLIRAGNKKLKLLSMPGMR 450
M+ + SG+QREV HLYR +R A K E N + EF + + R DF TIEHL+R GN++LK+ S P ++
Sbjct: 1 MARKLSGLQREVIHLYRSAVRVAHTKPVE-NQPHFLQFIHAEFSKYR-DLPRKDFTTIEHLLRVGNRRLKMYSQPELK 76
BLAST of mRNA_H-paniculata_contig2401.6498.1 vs. uniprot
Match: A0A1G4KNI3_9SACH (LANO_0H21902g1_1 n=1 Tax=Lachancea nothofagi CBS 11611 TaxID=1266666 RepID=A0A1G4KNI3_9SACH) HSP 1 Score: 52.0 bits (123), Expect = 4.050e-5 Identity = 32/73 (43.84%), Postives = 46/73 (63.01%), Query Frame = 1
Query: 217 MSGRASGVQREVTHLYRRVLRAARLKDSESNSTSTSDLVKTEFREQATSVGRTDFRTIEHLIRAGNKKLKLLS 435
M+ R SG+QREV +YR +RAA K +N + ++TEF + + R DF TIEHL+R GN++LK+ S
Sbjct: 1 MAKRISGLQREVLQVYRHCIRAAHRKPL-TNQPNFVRYIRTEFSKYR-DISRKDFSTIEHLLRVGNRRLKMYS 71
BLAST of mRNA_H-paniculata_contig2401.6498.1 vs. uniprot
Match: K3X5D9_GLOUD (Complex1_LYR_dom domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X5D9_GLOUD) HSP 1 Score: 52.8 bits (125), Expect = 4.650e-5 Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query: 232 SGVQREVTHLYRRVLRAARLKDSE-----SNST---STSDLVKTEFREQATSVGRTDFRTIEHLIRAGNKKLKLL 432
SG+Q +V LY++ LR A+ KD E S +T ST V+ FR+ A SVGR DF IEHLIR G + +K++
Sbjct: 20 SGLQMQVLALYKKALRTAQQKDRELVAASSGATAEVSTLTYVRERFRDDARSVGRMDFNVIEHLIRKGERDIKMM 94 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2401.6498.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2401.6498.1 >prot_H-paniculata_contig2401.6498.1 ID=prot_H-paniculata_contig2401.6498.1|Name=mRNA_H-paniculata_contig2401.6498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=90bp MSGRASGVQREVTHLYRRVLRAARLKDSESNSTSTSDLVKTEFREQATSVback to top mRNA from alignment at H-paniculata_contig2401:3710..6373+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig2401.6498.1 ID=mRNA_H-paniculata_contig2401.6498.1|Name=mRNA_H-paniculata_contig2401.6498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2664bp|location=Sequence derived from alignment at H-paniculata_contig2401:3710..6373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig2401:3710..6373+ >mRNA_H-paniculata_contig2401.6498.1 ID=mRNA_H-paniculata_contig2401.6498.1|Name=mRNA_H-paniculata_contig2401.6498.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=540bp|location=Sequence derived from alignment at H-paniculata_contig2401:3710..6373+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |