mRNA_H-paniculata_contig2152.5670.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2152.5670.1
Unique NamemRNA_H-paniculata_contig2152.5670.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2152.5670.1 vs. uniprot
Match: A0A6H5KY59_9PHAE (DRBM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KY59_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 1.670e-22
Identity = 50/74 (67.57%), Postives = 63/74 (85.14%), Query Frame = 1 
Query:    1 QYVHRYVEEREDHSVLSKSCTVKGRRRLSVMRRAMMEGLAYLSGGNVIVVDIPVPPTLPSEVPDLGLLTRPPPE 222
            +YVHR VEE  + +VLSKS TV+GRRRLSVMR+AMMEG+A++SG +VIVVD+P PPT P++V DL  +TRPPPE
Sbjct:  492 KYVHRMVEELNNPAVLSKSATVRGRRRLSVMRKAMMEGMAFMSGDSVIVVDLPPPPTSPADVGDLASITRPPPE 565
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2152.5670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KY59_9PHAE1.670e-2267.57DRBM domain-containing protein n=1 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2152contigH-paniculata_contig2152:676..1595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929581.5439155-CDS-H-paniculata_contig2152:675..8711622929581.5439155-CDS-H-paniculata_contig2152:675..871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2152 676..871 +
1691480923.005861-CDS-H-paniculata_contig2152:675..8711691480923.005861-CDS-H-paniculata_contig2152:675..871Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2152 676..871 +
1622929581.5601087-CDS-H-paniculata_contig2152:1569..15951622929581.5601087-CDS-H-paniculata_contig2152:1569..1595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2152 1570..1595 +
1691480923.0135834-CDS-H-paniculata_contig2152:1569..15951691480923.0135834-CDS-H-paniculata_contig2152:1569..1595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2152 1570..1595 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2152.5670.1prot_H-paniculata_contig2152.5670.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2152 676..1595 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2152.5670.1

>prot_H-paniculata_contig2152.5670.1 ID=prot_H-paniculata_contig2152.5670.1|Name=mRNA_H-paniculata_contig2152.5670.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=74bp
QYVHRYVEEREDHSVLSKSCTVKGRRRLSVMRRAMMEGLAYLSGGNVIVV
DIPVPPTLPSEVPDLGLLTRPPPE
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mRNA from alignment at H-paniculata_contig2152:676..1595+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2152.5670.1 ID=mRNA_H-paniculata_contig2152.5670.1|Name=mRNA_H-paniculata_contig2152.5670.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=920bp|location=Sequence derived from alignment at H-paniculata_contig2152:676..1595+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTACGTGCACAGGTACGTGGAGGAGAGGGAAGACCACTCGGTTCTATC
CAAGTCTTGTACTGTCAAAGGGCGGCGGCGGCTGAGTGTTATGCGCAGAG
CAATGATGGAGGGGCTGGCTTACCTCAGTGGAGGCAATGTCATTGTCGTC
GATATTCCCGTCCCGCCTACTCTGCCTTCGGAGGTACCGGACCTAGGTGA
GTTCTAGCGAAGAGGGCGGATCTTGCTTAGCCCGGGTTGATGTTTGAATC
CTTGCAGTGGTCAAGCCCTTGTGGCATCAAATCTGGTTTTGTAACACCTC
TGAACAAGTAACTTCGGTGCTCAGGCCCGTGTGATGATTGAGCTGGTTCG
TTCTTTGACCCGGTTCTGCTCCTGTAGGGTATTGGATGTTTGGAAATGCT
GCGTGTCTAAATTTTGTGTTGCTTTGTGTGCATTTTCAAGCATTATTTTA
TATAGTGCTCTTGACGAAAAGTAGCTTTTAGACGCGTCGATTGTCGGGTG
CGTCGATCGCTAGGTGCCGTTGTAGGCATTGACGGCGGGGAATATCGTGC
CCTCCCTTTCCTGCTGGGCGGGTAAGGGTTGCGGCAGATTGGATAGGAAG
ACATTTTGAGTTTTTCGCAGAAAAGGAGGGAATAATTGACCACCGTTATT
ATTATGAGGCCATATTACTTACTGACACCGATTTATTTTTCCGTTTGTAG
TCTGCCCAAATTTTTCAAGTGAATCAGGTACGAAGGAAGCAGCAGGGTGG
ACTTTTCATCTACATAGTTAGTTGTCTTGTGTGTGACAATTCAACAACAA
AATCGAGGTTATCGACCAACCAGGGCGATCGCTGAGCCTAGCAATCCCCC
TACCACTCCCCACGTCGTCTTCCCTCCGTCATTCCCACCCTAAGGACTAC
TGACGAGGCCGCCTCCAGAA
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Coding sequence (CDS) from alignment at H-paniculata_contig2152:676..1595+

>mRNA_H-paniculata_contig2152.5670.1 ID=mRNA_H-paniculata_contig2152.5670.1|Name=mRNA_H-paniculata_contig2152.5670.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at H-paniculata_contig2152:676..1595+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGTACGTGCACAGGTACGTGGAGGAGAGGGAAGACCACTCGGTTCTATC
CAAGTCTTGTACTGTCAAAGGGCGGCGGCGGCTGAGTGTTATGCGCAGAG
CAATGATGGAGGGGCTGGCTTACCTCAGTGGAGGCAATGTCATTGTCGTC
GATATTCCCGTCCCGCCTACTCTGCCTTCGGAGGTACCGGACCTAGCAGT
ACGTGCACAGGTACGTGGAGGAGAGGGAAGACCACTCGGTTCTATCCAAG
TCTTGTACTGTCAAAGGGCGGCGGCGGCTGAGTGTTATGCGCAGAGCAAT
GATGGAGGGGCTGGCTTACCTCAGTGGAGGCAATGTCATTGTCGTCGATA
TTCCCGTCCCGCCTACTCTGCCTTCGGAGGTACCGGACCTAGGACTACTG
ACGAGGCCGCCTCCAGAAGACTACTGACGAGGCCGCCTCCAGAA
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