mRNA_H-paniculata_contig21440.5644.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21440.5644.1
Unique NamemRNA_H-paniculata_contig21440.5644.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21440.5644.1 vs. uniprot
Match: D8LDA8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA8_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 4.670e-15
Identity = 69/164 (42.07%), Postives = 81/164 (49.39%), Query Frame = 3 
Query: 1239 VLLHVCSGPGSILAVRQVLAEESRKTRVSVFHALNVGEQGGVSDVHRKNCGGXXXXXXXXTENEGIGCRLGG-TTVAALGSLRRHGAYCVVELGFPNTAVDGGDDYGAGGGSNGGKEGEGERSGVGAPGGLGWFVVSIKFGRVDVPRMDGGETAGGERLAVRLT 1727
            +LLH C+GPG++LAVR+ L                  E+GG   V     GG            G+GCR+GG TTVAALGSLR+HGAYCVVEL  P T V  G   G G G  G KE              GW V S+ FGRV+    DG   A  E+LA R T
Sbjct:  368 LLLHACAGPGTLLAVREAL------------------EEGGAEPVGGGGAGGDGDCA------RGVGCRVGGGTTVAALGSLRQHGAYCVVELDMPAT-VPPGPRSGNGSGGVGAKE--------------GWSVASVAFGRVEAA--DGDPEAEREKLAHRAT 490
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BLAST of mRNA_H-paniculata_contig21440.5644.1 vs. uniprot
Match: A0A6H5KN29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KN29_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 3.030e-14
Identity = 68/164 (41.46%), Postives = 80/164 (48.78%), Query Frame = 3 
Query: 1239 VLLHVCSGPGSILAVRQVLAEESRKTRVSVFHALNVGEQGGVSDVHRKNCGGXXXXXXXXTENEGIGCRLGG-TTVAALGSLRRHGAYCVVELGFPNTAVDGGDDYGAGGGSNGGKEGEGERSGVGAPGGLGWFVVSIKFGRVDVPRMDGGETAGGERLAVRLT 1727
            +LLH C+GPG+ LAVR+ L                  E+GG   V     GG         +  G+GCR+GG  TVAALGSLR+HGAYCVVEL  P T V  G   G             E  GVGA    GW V S+ FGRV+    DG   A  E+LA R T
Sbjct:  230 LLLHACAGPGTFLAVREAL------------------EEGGAEPVGGGGAGGDG-------DCAGVGCRVGGGATVAALGSLRQHGAYCVVELDMP-TPVPPGPRSGN------------ESGGVGAK--EGWSVASVAFGRVEAA--DGDPEAEREKLARRAT 351
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21440.5644.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDA8_ECTSI4.670e-1542.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KN29_9PHAE3.030e-1441.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21440contigH-paniculata_contig21440:1399..4282 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-25_001910.1
Exons2
Model size1931
Cds size1683
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21440.5644.1prot_H-paniculata_contig21440.5644.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21440 1461..4096 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929578.160094-UTR-H-paniculata_contig21440:1398..14601622929578.160094-UTR-H-paniculata_contig21440:1398..1460Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21440 1399..1460 +
1691480921.7082207-UTR-H-paniculata_contig21440:1398..14601691480921.7082207-UTR-H-paniculata_contig21440:1398..1460Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21440 1399..1460 +
1622929578.1964827-UTR-H-paniculata_contig21440:4096..42821622929578.1964827-UTR-H-paniculata_contig21440:4096..4282Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21440 4097..4282 +
1691480921.7372112-UTR-H-paniculata_contig21440:4096..42821691480921.7372112-UTR-H-paniculata_contig21440:4096..4282Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig21440 4097..4282 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929578.1731582-CDS-H-paniculata_contig21440:1460..17351622929578.1731582-CDS-H-paniculata_contig21440:1460..1735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21440 1461..1735 +
1691480921.7219527-CDS-H-paniculata_contig21440:1460..17351691480921.7219527-CDS-H-paniculata_contig21440:1460..1735Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21440 1461..1735 +
1622929578.1867223-CDS-H-paniculata_contig21440:2688..40961622929578.1867223-CDS-H-paniculata_contig21440:2688..4096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21440 2689..4096 +
1691480921.7294273-CDS-H-paniculata_contig21440:2688..40961691480921.7294273-CDS-H-paniculata_contig21440:2688..4096Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21440 2689..4096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21440.5644.1

>prot_H-paniculata_contig21440.5644.1 ID=prot_H-paniculata_contig21440.5644.1|Name=mRNA_H-paniculata_contig21440.5644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=561bp
MPSVRLHGSSTDNKDGQTGARQAASSQSNQLKTVKEGRSLRSGSGSRGNK
TERAEALPQGAGDIGKSKGGAATGMGYSGLLQLTPTSKNLHCRDLRLAPG
LSAAGFAEETLTLPSSPRSVSAVVKSVSVSTSTAATPPVYDGGDVSPGPI
DAALQAICRGPKGPAPGSAENGGGDGDGGCRNGSAGAGAASRRLMLPEAV
VLLTRLGGPRCETVVREEVEGGNSRRGGNKTPTPPQQQLRAREGAAVGET
EAGGWKGLFRRDENNATSLEGEEEDNSPPAVRSGEAVETENTWEKNAMEC
PAACPEQDDSLEEHEASAAAVATACRLRRFWNHSTAASAAVAVVASEQNE
SCSGLARGSTGDKPPNSAITSTATTTTTVGGATVAILPRKRTVLLHVCSG
PGSILAVRQVLAEESRKTRVSVFHALNVGEQGGVSDVHRKNCGGGGGSGG
GGTENEGIGCRLGGTTVAALGSLRRHGAYCVVELGFPNTAVDGGDDYGAG
GGSNGGKEGEGERSGVGAPGGLGWFVVSIKFGRVDVPRMDGGETAGGERL
AVRLTAVDSD*
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mRNA from alignment at H-paniculata_contig21440:1399..4282+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21440.5644.1 ID=mRNA_H-paniculata_contig21440.5644.1|Name=mRNA_H-paniculata_contig21440.5644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2884bp|location=Sequence derived from alignment at H-paniculata_contig21440:1399..4282+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TAGCACAATTGGAGAATACCGTGTGCCGTGTGGTCTACGTGCCGGGCCCC
CTAGATCCGGCCATGCCTTCCGTGCGGCTACACGGATCTTCCACCGACAA
CAAGGACGGACAAACGGGAGCGAGACAGGCGGCATCATCACAATCCAACC
AACTAAAAACCGTGAAGGAAGGTCGAAGCCTTCGGAGCGGAAGCGGGAGC
AGAGGAAACAAGACAGAGCGTGCGGAGGCGTTGCCGCAGGGAGCGGGCGA
CATCGGAAAGAGCAAGGGTGGGGCGGCGACGGGCATGGGATATTCGGGAT
TGTTGCAGCTTACGCCGACTTCTAAGAATTTGCATTGGTGAGCCATGGGT
AATGGAATGATGGGGGGGGGGCATGATATCAAACGAATCACGTCCTCACG
GAGCCATGATGCCACAGTCATGAGCATGATAAGCAGTATAGATACATACG
TACTATTCTCGAAGTTTTAATCATTTCTACATGTTTTGTTTTTTTTGTAA
CCCCCGGAAGGAAGGCTAAGGCAAAAACCTTTACCGATGCTTCCATACCG
AAGTACGTCTACATTTCCTTTTACAGAACAGAGTGTTATTTGTTCCTCTG
CGGGGTAGGCGCCACGCCGGTTCGGCTGAACCAGGTAGGCAGTGTGGGGG
GTTGCACCCACTAAAAGACCTCTGCCTAGACTTCCAGTCATGCTCAGTTC
ACGAGCTACCCTTTCTACATGATGTTTTACCCATTTTTGCATCCATGGAG
ACTAGTTGGCAATTAGATTTGAATTGTTGAAACAGAACGAGTCGGCTAGT
GTAAAGGAGACATCATGTGGACAATTTGTCGTGCAGAGGAAAGAAATGTG
CATAATTAGAGTTTAGATATGCCATGGGTGTGGTCGTTTCCCAGCGCTCC
GAGACCGAAAATCTACCCCCTCAAAAAAACATAACCCCCCGCCCCGTGAC
TGCCAGGTGTCTTTCTGTTCCAAAACAGCGTTAGGCGATGAAGGAATCGA
GGGCCCATCGCGATATAAAGCAAAATCTATCTGTTTTCTTGATGTTTCTG
GCAAACACAGTCAAATGCGACTGACCATGTGGATCGTTCGAACACTCCAA
GTAAAGTTCCTCTCGGATTACGCCCCAACATAGCAGCCCTACACCTTCCG
TTGGTTTGTCGATGAGTCATTCAACAATATTGGAATTACTGAGCGCTCCT
CCGGTTACCGTCGTGCCTTCTTTCCGACTTCCCATATCTTGCGTGCTTGC
TCGCGTGCCTCTTCCCTTGCCACTGTTCCGCTGTTGTCAGTCGTGACCTC
CGACTGGCGCCGGGACTATCAGCGGCGGGTTTTGCCGAGGAGACACTGAC
GCTGCCGTCCTCACCCCGTTCTGTTTCCGCTGTCGTCAAAAGTGTGTCTG
TCTCAACTTCCACCGCCGCAACTCCGCCAGTATACGACGGCGGAGATGTT
AGCCCAGGTCCAATTGATGCTGCCTTGCAGGCGATATGTCGAGGTCCCAA
GGGGCCGGCACCGGGAAGCGCAGAAAACGGTGGTGGAGATGGTGATGGCG
GTTGTCGTAATGGGAGTGCTGGTGCTGGTGCAGCTAGCAGGAGGCTAATG
CTGCCTGAAGCGGTTGTCTTATTGACGAGATTGGGGGGACCTCGCTGTGA
GACGGTCGTTAGGGAGGAGGTCGAAGGCGGGAATAGCAGAAGAGGCGGTA
ACAAAACGCCAACGCCACCGCAGCAACAACTAAGAGCACGAGAAGGTGCG
GCAGTCGGGGAGACAGAGGCAGGGGGGTGGAAAGGATTGTTTCGACGCGA
CGAAAATAATGCGACATCGCTGGAGGGAGAGGAAGAAGATAACTCTCCCC
CCGCTGTTCGATCGGGAGAGGCGGTGGAGACTGAAAATACCTGGGAAAAG
AATGCCATGGAATGCCCTGCGGCCTGCCCGGAGCAGGATGATAGCCTTGA
GGAACACGAAGCGTCTGCTGCCGCTGTTGCTACGGCTTGTCGATTGCGGC
GTTTTTGGAACCACTCCACTGCTGCTTCTGCTGCTGTTGCTGTCGTTGCT
TCTGAGCAAAACGAAAGTTGTAGCGGCCTGGCACGAGGAAGCACCGGCGA
CAAACCACCGAACAGTGCCATCACAAGCACTGCTACGACGACCACCACTG
TTGGAGGTGCTACTGTGGCGATACTACCGAGGAAAAGGACGGTCTTGCTT
CACGTTTGTTCCGGACCTGGTTCAATCTTGGCCGTTCGGCAGGTTTTGGC
TGAGGAGAGCAGAAAGACCCGGGTCAGCGTCTTTCACGCTTTGAACGTCG
GAGAACAAGGCGGAGTGAGCGATGTTCACAGGAAAAATTGCGGTGGCGGC
GGCGGCAGCGGCGGTGGTGGTACTGAAAATGAGGGTATAGGGTGTCGGTT
AGGGGGTACCACAGTGGCGGCGTTAGGAAGCCTCCGCAGGCATGGCGCTT
ACTGCGTAGTTGAGCTTGGCTTTCCAAATACTGCTGTTGATGGTGGTGAC
GATTATGGAGCGGGTGGCGGTAGTAACGGTGGGAAGGAGGGAGAGGGTGA
GCGGAGTGGAGTTGGAGCTCCGGGTGGGCTCGGCTGGTTCGTGGTCAGCA
TCAAGTTTGGACGAGTTGATGTGCCCAGGATGGACGGCGGAGAAACGGCT
GGGGGCGAAAGGCTAGCAGTACGATTGACCGCTGTAGATAGTGATTAGAG
GGGGAGAGAACGGTTCCAGAATATTAATGATTGGTGCCAGCAATTTAGTG
ATTGATCGAAAAAAGTGCGAATACAATTGAGATATGACTCATCCACGATC
ATTACATTGTTTCAGGACAGCAGTTTTTTTGGGCTTTTTTTTACCTCCGG
AAGGCTGAGGCAAAAAACCTTTACCAATGCTTCC
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Coding sequence (CDS) from alignment at H-paniculata_contig21440:1399..4282+

>mRNA_H-paniculata_contig21440.5644.1 ID=mRNA_H-paniculata_contig21440.5644.1|Name=mRNA_H-paniculata_contig21440.5644.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=3366bp|location=Sequence derived from alignment at H-paniculata_contig21440:1399..4282+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTTCCGTGCGGCTACACGGATCTTCCACCGACAACAAGGACGGACA
AACGGGAGCGAGACAGGCGGCATCATCACAATCCAACCAACTAAAAACCG
TGAAGGAAGGTCGAAGCCTTCGGAGCGGAAGCGGGAGCAGAGGAAACAAG
ACAGAGCGTGCGGAGGCGTTGCCGCAGGGAGCGGGCGACATCGGAAAGAG
CAAGGGTGGGGCGGCGACGGGCATGGGATATTCGGGATTGTTGCAGCTTA
CGCCGACTTCTAAGAATTTGCATTGATGCCTTCCGTGCGGCTACACGGAT
CTTCCACCGACAACAAGGACGGACAAACGGGAGCGAGACAGGCGGCATCA
TCACAATCCAACCAACTAAAAACCGTGAAGGAAGGTCGAAGCCTTCGGAG
CGGAAGCGGGAGCAGAGGAAACAAGACAGAGCGTGCGGAGGCGTTGCCGC
AGGGAGCGGGCGACATCGGAAAGAGCAAGGGTGGGGCGGCGACGGGCATG
GGATATTCGGGATTGTTGCAGCTTACGCCGACTTCTAAGAATTTGCATTG
TCGTGACCTCCGACTGGCGCCGGGACTATCAGCGGCGGGTTTTGCCGAGG
AGACACTGACGCTGCCGTCCTCACCCCGTTCTGTTTCCGCTGTCGTCAAA
AGTGTGTCTGTCTCAACTTCCACCGCCGCAACTCCGCCAGTATACGACGG
CGGAGATGTTAGCCCAGGTCCAATTGATGCTGCCTTGCAGGCGATATGTC
GAGGTCCCAAGGGGCCGGCACCGGGAAGCGCAGAAAACGGTGGTGGAGAT
GGTGATGGCGGTTGTCGTAATGGGAGTGCTGGTGCTGGTGCAGCTAGCAG
GAGGCTAATGCTGCCTGAAGCGGTTGTCTTATTGACGAGATTGGGGGGAC
CTCGCTGTGAGACGGTCGTTAGGGAGGAGGTCGAAGGCGGGAATAGCAGA
AGAGGCGGTAACAAAACGCCAACGCCACCGCAGCAACAACTAAGAGCACG
AGAAGGTGCGGCAGTCGGGGAGACAGAGGCAGGGGGGTGGAAAGGATTGT
TTCGACGCGACGAAAATAATGCGACATCGCTGGAGGGAGAGGAAGAAGAT
AACTCTCCCCCCGCTGTTCGATCGGGAGAGGCGGTGGAGACTGAAAATAC
CTGGGAAAAGAATGCCATGGAATGCCCTGCGGCCTGCCCGGAGCAGGATG
ATAGCCTTGAGGAACACGAAGCGTCTGCTGCCGCTGTTGCTACGGCTTGT
CGATTGCGGCGTTTTTGGAACCACTCCACTGCTGCTTCTGCTGCTGTTGC
TGTCGTTGCTTCTGAGCAAAACGAAAGTTGTAGCGGCCTGGCACGAGGAA
GCACCGGCGACAAACCACCGAACAGTGCCATCACAAGCACTGCTACGACG
ACCACCACTGTTGGAGGTGCTACTGTGGCGATACTACCGAGGAAAAGGAC
GGTCTTGCTTCACGTTTGTTCCGGACCTGGTTCAATCTTGGCCGTTCGGC
AGGTTTTGGCTGAGGAGAGCAGAAAGACCCGGGTCAGCGTCTTTCACGCT
TTGAACGTCGGAGAACAAGGCGGAGTGAGCGATGTTCACAGGAAAAATTG
CGGTGGCGGCGGCGGCAGCGGCGGTGGTGGTACTGAAAATGAGGGTATAG
GGTGTCGGTTAGGGGGTACCACAGTGGCGGCGTTAGGAAGCCTCCGCAGG
CATGGCGCTTACTGCGTAGTTGAGCTTGGCTTTCCAAATACTGCTGTTGA
TGGTGGTGACGATTATGGAGCGGGTGGCGGTAGTAACGGTGGGAAGGAGG
GAGAGGGTGAGCGGAGTGGAGTTGGAGCTCCGGGTGGGCTCGGCTGGTTC
GTGGTCAGCATCAAGTTTGGACGAGTTGATGTGCCCAGGATGGACGGCGG
AGAAACGGCTGGGGGCGAAAGGCTAGCAGTACGATTGACCGCTGTAGATA
GTGATTAGTCGTGACCTCCGACTGGCGCCGGGACTATCAGCGGCGGGTTT
TGCCGAGGAGACACTGACGCTGCCGTCCTCACCCCGTTCTGTTTCCGCTG
TCGTCAAAAGTGTGTCTGTCTCAACTTCCACCGCCGCAACTCCGCCAGTA
TACGACGGCGGAGATGTTAGCCCAGGTCCAATTGATGCTGCCTTGCAGGC
GATATGTCGAGGTCCCAAGGGGCCGGCACCGGGAAGCGCAGAAAACGGTG
GTGGAGATGGTGATGGCGGTTGTCGTAATGGGAGTGCTGGTGCTGGTGCA
GCTAGCAGGAGGCTAATGCTGCCTGAAGCGGTTGTCTTATTGACGAGATT
GGGGGGACCTCGCTGTGAGACGGTCGTTAGGGAGGAGGTCGAAGGCGGGA
ATAGCAGAAGAGGCGGTAACAAAACGCCAACGCCACCGCAGCAACAACTA
AGAGCACGAGAAGGTGCGGCAGTCGGGGAGACAGAGGCAGGGGGGTGGAA
AGGATTGTTTCGACGCGACGAAAATAATGCGACATCGCTGGAGGGAGAGG
AAGAAGATAACTCTCCCCCCGCTGTTCGATCGGGAGAGGCGGTGGAGACT
GAAAATACCTGGGAAAAGAATGCCATGGAATGCCCTGCGGCCTGCCCGGA
GCAGGATGATAGCCTTGAGGAACACGAAGCGTCTGCTGCCGCTGTTGCTA
CGGCTTGTCGATTGCGGCGTTTTTGGAACCACTCCACTGCTGCTTCTGCT
GCTGTTGCTGTCGTTGCTTCTGAGCAAAACGAAAGTTGTAGCGGCCTGGC
ACGAGGAAGCACCGGCGACAAACCACCGAACAGTGCCATCACAAGCACTG
CTACGACGACCACCACTGTTGGAGGTGCTACTGTGGCGATACTACCGAGG
AAAAGGACGGTCTTGCTTCACGTTTGTTCCGGACCTGGTTCAATCTTGGC
CGTTCGGCAGGTTTTGGCTGAGGAGAGCAGAAAGACCCGGGTCAGCGTCT
TTCACGCTTTGAACGTCGGAGAACAAGGCGGAGTGAGCGATGTTCACAGG
AAAAATTGCGGTGGCGGCGGCGGCAGCGGCGGTGGTGGTACTGAAAATGA
GGGTATAGGGTGTCGGTTAGGGGGTACCACAGTGGCGGCGTTAGGAAGCC
TCCGCAGGCATGGCGCTTACTGCGTAGTTGAGCTTGGCTTTCCAAATACT
GCTGTTGATGGTGGTGACGATTATGGAGCGGGTGGCGGTAGTAACGGTGG
GAAGGAGGGAGAGGGTGAGCGGAGTGGAGTTGGAGCTCCGGGTGGGCTCG
GCTGGTTCGTGGTCAGCATCAAGTTTGGACGAGTTGATGTGCCCAGGATG
GACGGCGGAGAAACGGCTGGGGGCGAAAGGCTAGCAGTACGATTGACCGC
TGTAGATAGTGATTAG
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