mRNA_H-paniculata_contig2133.5604.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2133.5604.1
Unique NamemRNA_H-paniculata_contig2133.5604.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig2133.5604.1 vs. uniprot
Match: B8CD91_THAPS (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CD91_THAPS)

HSP 1 Score: 62.4 bits (150), Expect = 6.450e-10
Identity = 44/122 (36.07%), Postives = 58/122 (47.54%), Query Frame = 1
Query:    1 RNSAGKTPLHMVAAQHSLEGLLLLVADGADVNATDSYGRTPLHAACKNVERLVDNPSRRARECVEFLLXXXXXXXXXXXXXXXXXXXXA-KTGMVGAAEALV-LAGSTGTADDAGNTPLHLA 360
            RN+ G +PL + ++Q  L G++LL+  GADVN  D +GRTPLH A + V+      S    ECVE+LL                    A K G V     L+     T   D  GNT LH+A
Sbjct:   21 RNARGLSPLSISSSQCFLNGMMLLIQSGADVNLADVHGRTPLHLAAEKVD------SNEHHECVEYLLVNGARVDIQDCIDKRTPLHIASKRGCVRCINRLLQYKARTDITDSEGNTALHVA 136          
BLAST of mRNA_H-paniculata_contig2133.5604.1 vs. uniprot
Match: A0A7S4A3V7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3V7_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.520e-9
Identity = 42/119 (35.29%), Postives = 55/119 (46.22%), Query Frame = 1
Query:    4 NSAGKTPLHMVAAQHSLEGLLLLVADGADVNATDSYGRTPLHAACKNVERLVDNPSRRARECVEFLLXXXXXXXXXXXXXXXXXXXXAKTGMVGAAEALVLAGSTGTADDAGNTPLHLA 360
            N+ G + LH++AAQ S EGL +L+A GAD N   + GRTPLH          D     A  C   LL                     + G +     L+  G++  ADDAGN+PLHLA
Sbjct:   89 NAQGASSLHLLAAQGSSEGLAVLLAHGADPNLRGARGRTPLHYVADGTNDDDDLDGAYAT-CASQLLDAGATVDARDAAGRTPLAVAVQAGRLSLVRVLLARGASLVADDAGNSPLHLA 206          
BLAST of mRNA_H-paniculata_contig2133.5604.1 vs. uniprot
Match: A0A8J2SKQ2_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SKQ2_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 6.920e-9
Identity = 42/119 (35.29%), Postives = 55/119 (46.22%), Query Frame = 1
Query:    4 NSAGKTPLHMVAAQHSLEGLLLLVADGADVNATDSYGRTPLHAACKNVERLVDNPSRRARECVEFLLXXXXXXXXXXXXXXXXXXXXAKTGMVGAAEALVLAGSTGTADDAGNTPLHLA 360
            N+ G + LH++AAQ S EGL +L+A GAD N   + GRTPLH          D     A  C   LL                     + G +     L+  G++  ADDAGN+PLHLA
Sbjct:   37 NAQGASSLHLLAAQGSSEGLAVLLAHGADPNLRGARGRTPLHYVADGTNDDDDLDGAYAT-CASQLLDAGATVDARDAAGRTPLAVAVQAGRLSLVRVLLARGASLVADDAGNSPLHLA 154          
BLAST of mRNA_H-paniculata_contig2133.5604.1 vs. uniprot
Match: A0A838VT47_9BACT (Ankyrin repeat domain-containing protein n=1 Tax=Candidatus Dependentiae bacterium TaxID=2030827 RepID=A0A838VT47_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 5.690e-5
Identity = 23/44 (52.27%), Postives = 31/44 (70.45%), Query Frame = 1
Query:    4 NSAGKTPLHMVAAQHSLEGLLLLVADGADVNATDSYGRTPLHAA 135
            NS G+TPLH      + + + LL+A+GA+VNA D+YG TPLH A
Sbjct:   57 NSQGQTPLHSAIVSGNKDMIQLLMANGANVNAQDNYGNTPLHQA 100          
BLAST of mRNA_H-paniculata_contig2133.5604.1 vs. uniprot
Match: A0A0A2VT67_BEABA (Protein phosphatase 1 regulatory subunit 12A n=1 Tax=Beauveria bassiana D1-5 TaxID=1245745 RepID=A0A0A2VT67_BEABA)

HSP 1 Score: 50.8 bits (120), Expect = 7.450e-5
Identity = 28/67 (41.79%), Postives = 42/67 (62.69%), Query Frame = 1
Query:    7 SAGKTPLHMVAAQHSLEGLLLLVADGADVNATDSYGRTPLHAAC-----KNVERLVDNPSRRARECV 192
            ++G+T LHM AA+   E + LLV  GADVNA D  GRTPL  A      +NV+ L+ + + ++ +C+
Sbjct:  260 TSGETALHMAAAEQYPEMIRLLVTKGADVNAADVNGRTPLMEAAFWGRLENVQILLHHGADKSLQCI 326          
BLAST of mRNA_H-paniculata_contig2133.5604.1 vs. uniprot
Match: A0A6J0V742_9SAUR (neurogenic locus notch homolog protein 4-like n=1 Tax=Pogona vitticeps TaxID=103695 RepID=A0A6J0V742_9SAUR)

HSP 1 Score: 50.8 bits (120), Expect = 7.770e-5
Identity = 23/44 (52.27%), Postives = 30/44 (68.18%), Query Frame = 1
Query:    4 NSAGKTPLHMVAAQHSLEGLLLLVADGADVNATDSYGRTPLHAA 135
            +S G+TPLH+ A     +    L+A GADVNA D +GRTPLH+A
Sbjct:  687 DSPGETPLHLAARYSRADAARRLLASGADVNALDQWGRTPLHSA 730          
BLAST of mRNA_H-paniculata_contig2133.5604.1 vs. uniprot
Match: T0PV87_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0PV87_SAPDV)

HSP 1 Score: 50.4 bits (119), Expect = 9.710e-5
Identity = 25/46 (54.35%), Postives = 32/46 (69.57%), Query Frame = 1
Query:    4 NSAGKTPLHMVAAQHSLEGLLLLVADGADVNATDSYGRTPLHAACK 141
            ++A KTPLH+ AA  SL  + LL+  GA+VNA D  G TPLHAA +
Sbjct:   66 SNAKKTPLHLAAAARSLASVRLLLQFGANVNARDDNGCTPLHAAAR 111          
BLAST of mRNA_H-paniculata_contig2133.5604.1 vs. uniprot
Match: A0A803TS46_ANOCA (Uncharacterized protein n=1 Tax=Anolis carolinensis TaxID=28377 RepID=A0A803TS46_ANOCA)

HSP 1 Score: 49.7 bits (117), Expect = 9.860e-5
Identity = 22/44 (50.00%), Postives = 31/44 (70.45%), Query Frame = 1
Query:    4 NSAGKTPLHMVAAQHSLEGLLLLVADGADVNATDSYGRTPLHAA 135
            +++G+TPLH+ A     +    L+A GADVNA D +GRTPLH+A
Sbjct:   55 HNSGETPLHLAARFSRADAARRLLASGADVNARDQWGRTPLHSA 98          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2133.5604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
B8CD91_THAPS6.450e-1036.07Uncharacterized protein (Fragment) n=1 Tax=Thalass... [more]
A0A7S4A3V7_9STRA3.520e-935.29Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A8J2SKQ2_9STRA6.920e-935.29Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A838VT47_9BACT5.690e-552.27Ankyrin repeat domain-containing protein n=1 Tax=C... [more]
A0A0A2VT67_BEABA7.450e-541.79Protein phosphatase 1 regulatory subunit 12A n=1 T... [more]
A0A6J0V742_9SAUR7.770e-552.27neurogenic locus notch homolog protein 4-like n=1 ... [more]
T0PV87_SAPDV9.710e-554.35Uncharacterized protein n=2 Tax=Saprolegnia diclin... [more]
A0A803TS46_ANOCA9.860e-550.00Uncharacterized protein n=1 Tax=Anolis carolinensi... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2133contigH-paniculata_contig2133:7882..8241 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.7
Seed ortholog evalue9.3e-13
Seed eggNOG ortholog2880.D7FV96
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG0504@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-02_001780.1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size360
Cds size330
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.5243819-UTR-H-paniculata_contig2133:7881..79111622929572.5243819-UTR-H-paniculata_contig2133:7881..7911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2133 7882..7911 +
1691480919.2871544-UTR-H-paniculata_contig2133:7881..79111691480919.2871544-UTR-H-paniculata_contig2133:7881..7911Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig2133 7882..7911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929572.5483243-CDS-H-paniculata_contig2133:7911..82411622929572.5483243-CDS-H-paniculata_contig2133:7911..8241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2133 7912..8241 +
1691480919.2972603-CDS-H-paniculata_contig2133:7911..82411691480919.2972603-CDS-H-paniculata_contig2133:7911..8241Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2133 7912..8241 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2133.5604.1prot_H-paniculata_contig2133.5604.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2133 7912..8241 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2133.5604.1

>prot_H-paniculata_contig2133.5604.1 ID=prot_H-paniculata_contig2133.5604.1|Name=mRNA_H-paniculata_contig2133.5604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp
MVAAQHSLEGLLLLVADGADVNATDSYGRTPLHAACKNVERLVDNPSRRA
RECVEFLLSSGALKDARDTAGQTALHVAAKTGMVGAAEALVLAGSTGTAD
DAGNTPLHLA
back to top

mRNA from alignment at H-paniculata_contig2133:7882..8241+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2133.5604.1 ID=mRNA_H-paniculata_contig2133.5604.1|Name=mRNA_H-paniculata_contig2133.5604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=360bp|location=Sequence derived from alignment at H-paniculata_contig2133:7882..8241+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAAATTCGGCAGGAAAAACACCTTTGCATATGGTCGCCGCCCAGCACTC TCTAGAGGGCCTGTTGCTACTTGTGGCGGATGGGGCTGACGTTAATGCAA CCGACAGTTACGGACGAACCCCGCTGCACGCCGCTTGTAAAAATGTGGAA CGTCTTGTCGATAACCCCAGCCGTCGAGCGCGAGAGTGCGTGGAGTTCCT CTTGTCATCTGGAGCTCTGAAAGATGCTCGTGACACGGCAGGTCAGACGG CTTTGCACGTTGCAGCGAAGACTGGTATGGTGGGCGCAGCTGAAGCACTG GTGCTCGCTGGTTCAACTGGAACAGCTGATGATGCCGGAAATACTCCTTT ACATTTAGCT
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig2133:7882..8241+

>mRNA_H-paniculata_contig2133.5604.1 ID=mRNA_H-paniculata_contig2133.5604.1|Name=mRNA_H-paniculata_contig2133.5604.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig2133:7882..8241+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTCGCCGCCCAGCACTCTCTAGAGGGCCTGTTGCTACTTGTGGCGGA
TGGGGCTGACGTTAATGCAACCGACAGTTACGGACGAACCCCGCTGCACG
CCGCTTGTAAAAATGTGGAACGTCTTGTCGATAACCCCAGCCGTCGAGCG
CGAGAGTGCGTGGAGTTCCTCTTGTCATCTGGAGCTCTGAAAGATGCTCG
TGACACGGCAGGTCAGACGGCTTTGCACGTTGCAGCGAAGACTGGTATGG
TGGGCGCAGCTGAAGCACTGGTGCTCGCTGGTTCAACTGGAACAGCTGAT
GATGCCGGAAATACTCCTTTACATTTAGCTATGGTCGCCGCCCAGCACTC
TCTAGAGGGCCTGTTGCTACTTGTGGCGGATGGGGCTGACGTTAATGCAA
CCGACAGTTACGGACGAACCCCGCTGCACGCCGCTTGTAAAAATGTGGAA
CGTCTTGTCGATAACCCCAGCCGTCGAGCGCGAGAGTGCGTGGAGTTCCT
CTTGTCATCTGGAGCTCTGAAAGATGCTCGTGACACGGCAGGTCAGACGG
CTTTGCACGTTGCAGCGAAGACTGGTATGGTGGGCGCAGCTGAAGCACTG
GTGCTCGCTGGTTCAACTGGAACAGCTGATGATGCCGGAAATACTCCTTT
ACATTTAGCT
back to top