mRNA_H-paniculata_contig213.5591.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig213.5591.1 vs. uniprot
Match: D8LMV8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMV8_ECTSI) HSP 1 Score: 913 bits (2360), Expect = 6.820e-292 Identity = 693/1718 (40.34%), Postives = 861/1718 (50.12%), Query Frame = 3
Query: 2076 MACVELALLAA----PAVLNAVSSSRGGASRDDERTK-LIQLDCGAPLVVKYRFNYDTAMPQGDWLGVVPWGEEPTVGACVLKKLFPGTNAGTVRFEEGPSLPGKYAAHAFLRDSGDTVAGSTSLFECCMSFDETRVRQSRQGREFTLYLSTRWDMIMEREVFHVGAAPVLQQILDSRGVTFGCVDVRNDMLVEDLQTSVGLDAVLDGVKRARPYLVCCLGELNDVVLQSDSIDASILKEHPWLKVCLRRPHPPVAFGVAEREKSSI---------SMLTLTDVELLSAFLLPVLQETVQAETGFDRVTG--QPRLSGIPGGVNRHDGILTALGKFRKQASLND---DDGESEEKAGFCP-KSTAVSTGPLVRSPGLVMLDAVRQSRGSLTKYALFYTRAACLRSELHSSQKQEAGNITGVIRCINDSKRRMNQLKQELAASTNYFRQGYEDEAMLLRMFLEDLKRVFDEVYPVHSVPDRTDDASLRPHAFASHLLQRATVKLPSVRYRGFRLEP----------PTSSMPTTASTSQNAAIAVDSFKEESAAAWRFQQRRDFMPFEERIRRIS--------VIRKHSTWTGTMEAAVAAA-------GTITANGDHNNEEVMPADD-----------RGAADTNTRASPAKLFPVVLADYLGDTSTIGMAVVDQPGTGLTTALLSFLEWYCRGETAGGRRGVRVLEVMDSIPQCGRCYLSRSVLIRPRQIVRTLQDGKLSYEAVQRRTLVLRIDCRDPCHPRLDKAHLVHHVACEIIRTFGISCKLPDKPGLSS-----------------GSANGSDGD------------------------------------HRSHQTGSSVGG----------------DSVASAEPRAQGAXXXXXXAG---GLGDSNVCVGGLAVSGGKKGLANWTKVGPDYLWRWFDLLGRYGDLVLLIESPDALISSEERAAAIATAEIHPNPLSWLPPELPEHV--ITTCTQGSFCQQVLLRPGGWGWHTIRRKTGLDAETKGQVIDAVFRQHGVGCMLDWVESVLILKEKTTNMQYLVQVATAICEQGCLRCCTLAPGLL------QRHNKPHS----------STACAPSGGGNGLNGG------MDKTRLLELREATALLMREESALGVARFRIRRVVSMETVRARLLRAAICLVKLSRGGLSPYEIMRALCHLLTHQSQRRPDHHGI--ITRVGPSGAPTTTAIHMASAPITPGRSSPRHHXXXXXXXXXXXXXXXXXXXXKSPSLLGGGSEAEKDQIETAKMERVKSESMRYDTKIDAPTNTNGPTVAAATTSLTLPFKAASPTVSASQQRARGTKTTVKQ-------------------------------------------------------------------EEGREVANAGSDGPSRPAFSGQDWRLLEPELMPFCFKVLGRLVLCGNLIMTAVDHELINTQFYLQVLAESFAKDLPSARRGVEQLGALAGILKLSIQGGVEMPRKAATRQHRENLLNALADVELLRADPQSYLEYMHLAQVFATPSRFVAAVHASFERYYNVVSAEEL---------HATTKRPARAHHPLLYTIDSIRLKPPEAAALLKSRRQQHQQQP--------------------------QPQYISSAQKLTRAGPLRLLKAARLTLERLGETEKAMNLAESALALMF 6461
MA V+L ++A P S+ + GA+ + T ++L CGAP V YRFNY TA+P GDWLGV+ WG+EPT G C++++ F +++GTV FEEGP LPGKYA HAFL +S + VAGST++FEC F R SR GREFTLYLSTRWDM++ER F AAP L+Q+LD+RGVTFG +D R+D+ VEDL T G+DAVLDG++R PY VCCLGELNDV L ++S++ASIL+ +PWLK L P + ++REK + +MLT+TD+E+LS FLLPVLQET+QAE+G G + RL+ +PGG RH I+ AL FR+ S D DG EE AG K A G C + +H G + C S+R K DL R D +YP+H+ PDR D SL PHA A +LL A VKLP VRYRGFR EP P ++ AST+ AWR QQR +F+PFEER++R+S + AAA G+ G + PA+ T A AK VVLADYLGD +TIGM VVDQPGTGLTTALL FLEWYCRG+ AGGR+GV V+E +D IPQ GRC LSR+V+ RPR + R L DG L+ E V+RRTLV+R+DCRDPCH RLDKAHLV++++CEIIRTFG+ K+PDKPGLSS G+ GD + H G V G D A+ +P+ Q A +G G G V GGK+G T++GP+ L RWFD+L +GDLVL+IE+PDAL++ EERAAA + E PNPL+WLPPELP HV ITTC+ GS CQQ+L GWGWH +RRK GLDA+TKGQVIDAV R+HGVGCMLDWVES L+LKEKT N+Q+LV V A+C G L L PGL R P S S +C +G G +G + + LR A A +M EESA+GVAR RIR++VS++ R LLRAA+CLV+LS GLS E+ AL H+L +R HH T V S A + T XXXXXXXXXXXXXXXXXXXX S E E A V + + R +P T P T P AS + + G ++ E G ++ ++ RPAF QDWR LEP+LM FC KVLGR VL + +TAVD E + T+ VLA+SFAKDLP RR EQL ALA I+ LS GGVE PR+A+ R HRE L ALADVELL A S ++FE YYNVVS + + H + A A H LLYT+ LK P AA +QP LTRAG LRLL+AA+L LERLG+ E+ MNLAESA ALMF
Sbjct: 1 MARVDLKIVAGVSPPPTTATTASNLKLGATTSNSPTPGFLRLTCGAPFEVAYRFNYSTAVPTGDWLGVIAWGDEPTAGTCIVRRPFLESSSGTVFFEEGPPLPGKYAVHAFLTESNNAVAGSTAMFECISGFGAEEARCSRNGREFTLYLSTRWDMMLERAAFRDAAAPALKQMLDARGVTFGFIDARSDLDVEDLTTPRGVDAVLDGIRRCCPYFVCCLGELNDVELGAESVNASILQGNPWLKRVLLSDSPALT-NSSDREKKLVRAGRMRAAAAMLTVTDLEVLSGFLLPVLQETIQAESGSCTTAGVTRARLAAVPGGAARHSCIVNALADFRRLVSQQDREGGDGHDEEVAGDGNGKPVAADAGH------------------------------GCSEARIHD------GTRLLLHSCRVPSQRAPPYPKN-------------------------DLSRAIDRLYPMHTAPDRLDYVSLFPHASARNLLNAAVVKLPVVRYRGFRPEPSAVTGGVLASPGLAVSPAASTAXXXXXXXXXXXXXXXXAWRLQQRLEFIPFEERVKRMSGEAQGGGDISXXXXXXXXXXXXXTAAAVRVDLSLGSDGRRGTARSLGTTPAETGXXXXXXXXXXXXXXXXXTPAVAAKRLAVVLADYLGDKTTIGMVVVDQPGTGLTTALLGFLEWYCRGQVAGGRKGVTVVESLDRIPQYGRCNLSRAVISRPRLVSRNLNDGGLADETVERRTLVVRVDCRDPCHGRLDKAHLVNYLSCEIIRTFGMPYKMPDKPGLSSRYRIYNCRLDMFIFNLYGTYQWRRGDATNVGTLELRCRALWVERAAVRERTHWKELKPLALGNGGHHEGKKVHGIVSEQTSDNPREHNHDDDEAAVDPQDQLAADTAAPSGTKSGGGTMAVXXXXXXXKGGKEG--GRTEIGPEVLRRWFDVLRGHGDLVLVIENPDALVTPEERAAA--SPEQVPNPLAWLPPELPPHVKVITTCSTGSSCQQLLCGAEGWGWHMLRRKAGLDADTKGQVIDAVLRKHGVGCMLDWVESDLVLKEKTANIQFLVGVTEALCYSGKLARSGLPPGLHTAASAGSRPASPSSVSSAAACRSNSGSCTSAGKGENCDGXXXXXXXLSDADVASLRGAAASMMHEESAIGVARLRIRQLVSIKGHRGSLLRAALCLVRLSHAGLSVLELSAALRHILERYKSQRHQHHKPPPYTNVTASAAGSGTGXXXXXXXXX---XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSAREPPAREAA----VATPTTRQSPASTSPQATGSPE--------TPPNPGASADTTKDRNNDSGLPDAPRKSVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGKGAAALGEHGLTSSSPRAERTQRPAFGQQDWRALEPDLMQFCHKVLGRFVLRDFVTVTAVDLECLETRDKFVVLADSFAKDLPGVRRAEEQLAALAAIVVLSTHGGVEAPRRAS-RPHREKLFTALADVELLYAMNGS---------------------KSTFEEYYNVVSHKAMGFHGRNHREHYQHQARAAATHDLLYTVHG--LKHPVAA-----------RQPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLTRAGALRLLEAAKLVLERLGDAEETMNLAESAWALMF 1602
BLAST of mRNA_H-paniculata_contig213.5591.1 vs. uniprot
Match: D8LMV9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMV9_ECTSI) HSP 1 Score: 242 bits (617), Expect = 1.610e-67 Identity = 163/340 (47.94%), Postives = 204/340 (60.00%), Query Frame = 1
Query: 538 GNRSGVNLLDRRFDDSMVDYLSAEVLLQQAFLIRANTFGVDHPTTRATAVRLLQVYDAQQGGKREEVAELRTDPKAHLRTVENKIAELDKAIGTFRS--GNATRMSGAC-----------------NTACLFVKKWAKPFKERQENEIRQR-VRTVGA------VRTTAIKWNKHAPRSSTG--SGSGSSSGGLFPEWDPAGEASDGELINTGSVEGDGGRSLADPQSGEEGSWQTTERLGPEG---TELGGPTPELESVEAMRQAANMLQRHDYLLASRSCITSLEKDVRNPVALRVLQESCRQLSAFPQQKDFRAVAEVSLGPATKGVLGERFTVRYS 1464
G++SG+NLLDR FDDSMVDYLSAEVLLQQAF IR+ TFGVDHP RA+ + LLQVYDAQ GG+++E ELR DP AHLRTV +IAEL++AI TF++ G A A LF +KWA ER IR+R +T A V+ A + H ++ G + G SGG G SD E+ N + G + P W TT R+ PEG T L S EA+R+A + L+R DY LA+RSC+ SLE+DVRNPVA++VLQES RQ+S+FP+++DFRA EV+LGPA GVLGERFTVRYS
Sbjct: 2 GSKSGINLLDR-FDDSMVDYLSAEVLLQQAFSIRSATFGVDHPKARASGMLLLQVYDAQNGGRQDEAKELRADPHAHLRTVNLRIAELERAIETFKTEGGGAFXXXXXXXXXXXXXXXEDAADVELRLANLFKEKWALAAAERARQRIRKREFQTFAALEEDKGVKEKATRGGLHTDMNAYGVQAEEGYLSGG------GPGMVSDWEMTNAATAMTAGSEA---PHV-----WHTTARIDPEGLSATLLSASNTGFNSEEAVRRATDSLKRQDYFLAARSCMGSLEQDVRNPVAIQVLQESFRQISSFPKKEDFRADVEVALGPAASGVLGERFTVRYS 326
BLAST of mRNA_H-paniculata_contig213.5591.1 vs. uniprot
Match: D8LMV7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMV7_ECTSI) HSP 1 Score: 238 bits (606), Expect = 4.290e-65 Identity = 161/345 (46.67%), Postives = 199/345 (57.68%), Query Frame = 3
Query: 6543 RLLAGIYVSLGSDMHLLLFHEDAQSGPPGEVTPHREVVDGADIEDMPRAAAPTPTLSHAHTNSLIGSKVGTVRSTISRVPSRI----------LDFPGSQGMSGTRQHSSQSGSAASGRSLRASSHTTPPFSNHASSESSRTTETSIGKTGRFATAGRVREFKMTLQAAAAHASKMKIAHAKRELNLEGLVRGYDVDAGVLNKSTNPGTQSKQQIGRVARAREAADKMLKRWPIIIERMGLCTEQAIKIRKLVRTKSTLP--GIGGSN----------SACQCDTRSSEELRVTREHARXXXXXXXILALSLRFERLALHIQRKQEDRELLRQAALGLGPPGITV 7511
R+LAG+YVS G DMHLLLFHE AQ+ + + A G+ RS + + + L G+ GM G R + + SG +R + ++ + SS RT T GKTGRFATAGR+REF+ L+ AAAHASKMK AHA REL++EG VRG+DVDA VLNKSTNPG Q+KQQIGRVARAREA D ML RWP++IERMG+CTEQAIKIR LV+T T P G+ N S+ DTR+ E R +EHAR IL LS RFER+A IQR+QE+RE R AALGL PPG+++
Sbjct: 32 RILAGVYVSRGFDMHLLLFHEAAQTESRSDDSSSYS----AGXXXXXXXXXXXXXXXXXXXXXXXXXXXGSTRSGNAGQENGVGGAGTQSKTELGVSGTTGM-GQRHSMAVEATGVSGLKVRCDASSSSLDGSGGSSR--RTAATVTGKTGRFATAGRLREFRAMLKGAAAHASKMKTAHANRELSIEGAVRGHDVDAAVLNKSTNPGRQTKQQIGRVARAREAVDGMLTRWPLVIERMGICTEQAIKIRNLVKTAGTFPTGGLAAENTEPAAATAAGSSSTNDTRACERRRAAKEHARVVEQHAEILTLSQRFERVASAIQRRQEEREYHRLAALGLVPPGVSI 369 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig213.5591.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig213.5591.1 >prot_H-paniculata_contig213.5591.1 ID=prot_H-paniculata_contig213.5591.1|Name=mRNA_H-paniculata_contig213.5591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1812bp MACVELALLAAPAVLNAVSSSRGGASRDDERTKLIQLDCGAPLVVKYRFNback to top mRNA from alignment at H-paniculata_contig213:15713..44584+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig213.5591.1 ID=mRNA_H-paniculata_contig213.5591.1|Name=mRNA_H-paniculata_contig213.5591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=28872bp|location=Sequence derived from alignment at H-paniculata_contig213:15713..44584+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig213:15713..44584+ >mRNA_H-paniculata_contig213.5591.1 ID=mRNA_H-paniculata_contig213.5591.1|Name=mRNA_H-paniculata_contig213.5591.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=10872bp|location=Sequence derived from alignment at H-paniculata_contig213:15713..44584+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |