mRNA_H-paniculata_contig21280.5583.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21280.5583.1
Unique NamemRNA_H-paniculata_contig21280.5583.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig21280.5583.1 vs. uniprot
Match: D8LCR1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCR1_ECTSI)

HSP 1 Score: 122 bits (305), Expect = 1.670e-28
Identity = 75/141 (53.19%), Postives = 88/141 (62.41%), Query Frame = 1 
Query:  112 AWSAEAEAPLLWWWETDSEARTPWGVARLLGLLLRHMRQPERARSLLHAILLLALRSPSQLLRFPLAFLEAFPTCLEPPTPLPASHTAHASLPAARTPSLTVSRNSDDTSSASSQPPRVGAGMGLLAPGLWRRAVLTALFP 534
            AW AEAEA +LWWWETD EAR PW VARLLGLLLR + QP+R +++LH IL+ +L  P++L RFPLAFLEAFP  L     L +S TA A  PA          N            +V  G G+LAPGLWRRAV   LFP
Sbjct:  302 AWRAEAEATVLWWWETDEEARVPWAVARLLGLLLRRLDQPQRTQAVLHPILVRSLGGPARLRRFPLAFLEAFPGLL-----LRSSPTA-AGAPA----------NGRYWGGQEEDGAKVERGDGVLAPGLWRRAVAAVLFP 426
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BLAST of mRNA_H-paniculata_contig21280.5583.1 vs. uniprot
Match: A0A6H5LB44_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LB44_9PHAE)

HSP 1 Score: 120 bits (300), Expect = 7.600e-28
Identity = 74/148 (50.00%), Postives = 90/148 (60.81%), Query Frame = 1 
Query:   91 GDRGSSQAWSAEAEAPLLWWWETDSEARTPWGVARLLGLLLRHMRQPERARSLLHAILLLALRSPSQLLRFPLAFLEAFPTCLEPPTPLPASHTAHASLPAARTPSLTVSRNSDDTSSASSQPPRVGAGMGLLAPGLWRRAVLTALFP 534
            G+     AW AEAEA +LWWWETD EAR PW VARLLGLLLR + Q +R +++LH IL+ +L  P++L RFPLAFLEAFP  L     L +  TA  +L   R       R   +   A     +V  G G+LAPGLWRRAV   LFP
Sbjct:  675 GEEEGGDAWRAEAEATVLWWWETDEEARVPWAVARLLGLLLRRLDQLQRTQAVLHPILVRSLGGPARLRRFPLAFLEAFPGLL-----LRSPLTAAGALANGR------HREGQEEDGA-----KVDQGDGVLAPGLWRRAVAAVLFP 806
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21280.5583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LCR1_ECTSI1.670e-2853.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LB44_9PHAE7.600e-2850.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21280contigH-paniculata_contig21280:200..2857 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size606
Cds size606
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21280.5583.1prot_H-paniculata_contig21280.5583.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21280 200..2857 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929569.6890311-CDS-H-paniculata_contig21280:199..4141622929569.6890311-CDS-H-paniculata_contig21280:199..414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21280 200..414 +
1691480917.973845-CDS-H-paniculata_contig21280:199..4141691480917.973845-CDS-H-paniculata_contig21280:199..414Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21280 200..414 +
1622929569.702933-CDS-H-paniculata_contig21280:2346..26931622929569.702933-CDS-H-paniculata_contig21280:2346..2693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21280 2347..2693 +
1691480917.9839683-CDS-H-paniculata_contig21280:2346..26931691480917.9839683-CDS-H-paniculata_contig21280:2346..2693Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21280 2347..2693 +
1622929569.7191262-CDS-H-paniculata_contig21280:2813..28571622929569.7191262-CDS-H-paniculata_contig21280:2813..2857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21280 2814..2857 +
1691480917.9932806-CDS-H-paniculata_contig21280:2813..28571691480917.9932806-CDS-H-paniculata_contig21280:2813..2857Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21280 2814..2857 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21280.5583.1

>prot_H-paniculata_contig21280.5583.1 ID=prot_H-paniculata_contig21280.5583.1|Name=mRNA_H-paniculata_contig21280.5583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=202bp
FGNSKKRKAQKAQKAKAAAAQSKDPSSQRQGDRGSSQAWSAEAEAPLLWW
WETDSEARTPWGVARLLGLLLRHMRQPERARSLLHAILLLALRSPSQLLR
FPLAFLEAFPTCLEPPTPLPASHTAHASLPAARTPSLTVSRNSDDTSSAS
SQPPRVGAGMGLLAPGLWRRAVLTALFPAGNIIAGGGGGGEGGGEVGGGR
GG
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mRNA from alignment at H-paniculata_contig21280:200..2857+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21280.5583.1 ID=mRNA_H-paniculata_contig21280.5583.1|Name=mRNA_H-paniculata_contig21280.5583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2658bp|location=Sequence derived from alignment at H-paniculata_contig21280:200..2857+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGGCAACAGCAAAAAAAGAAAGGCTCAAAAGGCGCAGAAGGCCAAAGC
CGCTGCTGCACAGTCCAAAGATCCTTCTTCTCAGAGGCAGGGCGATCGCG
GGTCGTCGCAGGCATGGTCGGCCGAGGCCGAGGCGCCTTTGCTGTGGTGG
TGGGAGACGGACAGCGAGGCTCGGACCCCGTGGGGTGTGGCGAGACTTCT
TGGTCTCCTGTTGAGGTCAGCGGTCACTGTGCAGTAAAGAAGACATTCAT
CGACACCCTTACGATTGCCAGAGAGACAAAGATAGATACGAAATACCTGC
TGCTACAGCAGTCATGGAGCCAGATTGCAGGATTCGGGTAGGTTCGGGGA
CACCACGTCCGAACCAAGTGACCACTCTTTGTTAATTCCTGAAAACCAAC
TGGGCTTAGCTGCACTACAAAGAAGAGCGCACATGGCACAGGGCGGGTGC
ATCACGCGAAACAAATGGCATGCAACAACCTGGGAAAGTATGTTAGCTAC
GGTTCTGACGGAGAGTTCTGACTGAGAACGAAGAGCACGTAAAGATAGAG
AAACAGGATTAACGTCACACACAGGGCAGGACGCACGGTTGACGCCTGCA
GAGAAATATGCCGTCCGTTGCACTCGGGCGCACCACGGCCGACGGACGCT
TGACGGCAAATAAACGCCAGACAGACCAAAAATGAACCTGGCAAGAAACA
AAAGCAAAAATGAACTAAACGGAGAGAAGAGCGAAGTTTCCCGGAAGTAT
TGCTCTCACAGCCGCCCAGAAAATTCAAACGAAGGGATCTGTCCAAAAGC
GTAATTGTAAAAACATTTGATTGCGGCTGGCTGTATGTTGACAGGGGCGT
TTGTCTCCGGCGAACTTGATCCAGAATGGGATGGGGGAAAGATTTTTTTT
TTTTTTTTCCAAATCCAAATCCAAATCCAAATCCACAATTGCTGGTCCTA
AGAAGAGCTTGGAGGCCACAGAACAAACAAACAAGTTTTCAGGGAGAGGG
ATCATTTTTTTTTTTTTCCCATTTTTTTCATTTTTTTCATATTTTTTCCC
CATTTTTTTCATATTTTTTCCCCATTTTTTTCATTCAAAACGATCGAACA
CAATAATGCTTGTATGCTTTATACTTCCGGGTGGACTGTTTTGTTCGTTA
GCGTTAGCATTGGCGTTGGCGTTGGCGTGTTTCATTTTCCGAGTCGAAGT
CTTGCTAGAGGGGTAAAAAAACCAACTGTGGCAACGTTTTTTTTTTTTTT
TCTTGTGGCGTTTGACGTAGTCTGGTAAGAACTGACCTTGAAGAGCGCAT
CGATAGTAATAATGTGTCGACCCCTGAAGGAACTCATGATCACCTGAGTA
GCTGTGTGTGGTGTGTGCTCGCTTACTGTTTGTCATTTGGTTGTAACGAA
AAAAGCGGATGTTTGGCAACAGCCCCCCGGAATGGCGGGAATAAGGTCCC
CCTTTCGTATACATGTGAAATGCGCCGACTACTCAACTGCCTAGAGCCGA
TGATGCACTCCGTCGGTATATGTTCGTCATTATTCGTGATTGGTCATTGG
CAACATCTGTATCTTGATAGTTACGAAGTGCTATTCCTAAAGACCTAAAC
CAACCCACTTGGTCTATTATTAGCAGTGTACATTTTTTTGTCTTTTTTTC
TTTTTTACTTTTTATGCTGCTTGTTGCTTCGCGTTGATCTGACTCGCACG
AAACCAACACCGAGCTCTAACGTGCACGCACCGAACCCTACAATGGAGTA
TAGTGTGCGGTCCTACAGTTCAAACCGGCACCGTTCGCGCCCGCCGTGTG
TGAGGAAAGAGTCTTTGGGGTACACATAATGTACACGTACGTAGGTACGT
AAGGAACGTTCTTCCAAATCGGAATGTTCTTCTAGGTCAGGTCGGTCGGA
ACGGCGATTTTTTTTTTTTTTAAATAAGGGGTCTCGTAAGATGCTGGGGT
TGTGTACGATAGCTAGCCTCAGCCAGAAATTGTTTTTGAACATACTTGTG
GAAGTCTACCGGGAACTAAGTAGCTGACTGACTGACTGACTGGTTAACGA
GCTGCCTGTCTGTCTGGCGGATTCCCTGGTCCATAATCGTCGTTATCATC
ATCATCATCGTCCCCATCCACCCCTCTACAAATTCCGTCCGTCTCAGGCA
CATGCGACAACCGGAACGAGCCAGGTCCCTCCTCCACGCCATCCTGCTGC
TAGCCCTCCGCAGCCCCTCCCAGCTCCTCCGTTTTCCCCTCGCCTTCCTC
GAGGCCTTCCCGACCTGCCTTGAGCCGCCAACACCACTACCCGCTTCTCA
TACAGCGCACGCCTCCCTCCCTGCCGCCAGGACACCATCGTTGACCGTGT
CCAGGAACTCCGATGACACTAGCTCCGCGTCCTCTCAGCCACCGCGAGTA
GGGGCGGGGATGGGGTTGCTGGCTCCTGGGCTGTGGAGGCGCGCCGTGCT
TACCGCACTATTTCCTGCGGGGAATATAATCGCGGGAGGGGGAGGTATGG
CCTTGGTCGCTGGCAGGCTCAAGGCAGTTTGCTCGGGTAGTGTTGGTGCT
GCTGGTGCTGAGTCGGTAAATGGTAAGGCGAGAGAGTCATTTTCCAGAGC
AGGAGGAGGGAGAGGAGGAGGCGAGGGAGGTGGTGAAGTGGGCGGAGGTA
GAGGTGGA
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Coding sequence (CDS) from alignment at H-paniculata_contig21280:200..2857+

>mRNA_H-paniculata_contig21280.5583.1 ID=mRNA_H-paniculata_contig21280.5583.1|Name=mRNA_H-paniculata_contig21280.5583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1212bp|location=Sequence derived from alignment at H-paniculata_contig21280:200..2857+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TTCGGCAACAGCAAAAAAAGAAAGGCTCAAAAGGCGCAGAAGGCCAAAGC
CGCTGCTGCACAGTCCAAAGATCCTTCTTCTCAGAGGCAGGGCGATCGCG
GGTCGTCGCAGGCATGGTCGGCCGAGGCCGAGGCGCCTTTGCTGTGGTGG
TGGGAGACGGACAGCGAGGCTCGGACCCCGTGGGGTGTGGCGAGACTTCT
TGGTCTCCTGTTGAGTTCGGCAACAGCAAAAAAAGAAAGGCTCAAAAGGC
GCAGAAGGCCAAAGCCGCTGCTGCACAGTCCAAAGATCCTTCTTCTCAGA
GGCAGGGCGATCGCGGGTCGTCGCAGGCATGGTCGGCCGAGGCCGAGGCG
CCTTTGCTGTGGTGGTGGGAGACGGACAGCGAGGCTCGGACCCCGTGGGG
TGTGGCGAGACTTCTTGGTCTCCTGTTGAGGCACATGCGACAACCGGAAC
GAGCCAGGTCCCTCCTCCACGCCATCCTGCTGCTAGCCCTCCGCAGCCCC
TCCCAGCTCCTCCGTTTTCCCCTCGCCTTCCTCGAGGCCTTCCCGACCTG
CCTTGAGCCGCCAACACCACTACCCGCTTCTCATACAGCGCACGCCTCCC
TCCCTGCCGCCAGGACACCATCGTTGACCGTGTCCAGGAACTCCGATGAC
ACTAGCTCCGCGTCCTCTCAGCCACCGCGAGTAGGGGCGGGGATGGGGTT
GCTGGCTCCTGGGCTGTGGAGGCGCGCCGTGCTTACCGCACTATTTCCTG
CGGGGAATATAATCGCGGGAGGGGGAGGCACATGCGACAACCGGAACGAG
CCAGGTCCCTCCTCCACGCCATCCTGCTGCTAGCCCTCCGCAGCCCCTCC
CAGCTCCTCCGTTTTCCCCTCGCCTTCCTCGAGGCCTTCCCGACCTGCCT
TGAGCCGCCAACACCACTACCCGCTTCTCATACAGCGCACGCCTCCCTCC
CTGCCGCCAGGACACCATCGTTGACCGTGTCCAGGAACTCCGATGACACT
AGCTCCGCGTCCTCTCAGCCACCGCGAGTAGGGGCGGGGATGGGGTTGCT
GGCTCCTGGGCTGTGGAGGCGCGCCGTGCTTACCGCACTATTTCCTGCGG
GGAATATAATCGCGGGAGGGGGAGGAGGAGGCGAGGGAGGTGGTGAAGTG
GGCGGAGGTAGAGGTGGAGAGGAGGCGAGGGAGGTGGTGAAGTGGGCGGA
GGTAGAGGTGGA
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