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Homology
BLAST of mRNA_H-paniculata_contig2126.5572.1 vs. uniprot
Match: D7FNX6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FNX6_ECTSI) HSP 1 Score: 183 bits (464), Expect = 9.090e-51 Identity = 105/209 (50.24%), Postives = 132/209 (63.16%), Query Frame = 3
Query: 264 VQARVTEMLELLKARAPNLRPNVTPRPFKHAVSSNLLTLCQTAEHRAAVQAFLVKRLGTEHEDVQLADGGRAGGASSRQ------GEGVRGHIVLDTEVDVSARIFRITGAKLSGEIDAALHDLEWLMELQLKSSREEFEPYVSHFAAANELGSDVAAAPALQEVCGLAYALQVATSHMPGWTGYVGSLQLPIPTDANITELLQELFEP 872
VQ RV E+ LLK +AP+L P+V PRP+KHA ++N++TLC T RA +AFL + + D A G R G +Q EG R H+VL+TE D++ R FRIT AKL G IDA L DL LM+L L + R+E EPYV FAAANEL AA AL C LAYALQVATS + GW G+VGS LP+ D ++T ++ ELF P
Sbjct: 13 VQDRVMEIAALLKKKAPHLAPSVIPRPYKHA-AANIVTLCSTPRQRADAEAFLASKAESATVDDVAAAGERGRGEEGQQIESEDAAEGGRHHVVLETETDIATRTFRITAAKLGGRIDATLSDLNLLMDLHLNAPRQELEPYVERFAAANELDPSTAAL-ALHGACSLAYALQVATSSIAGWNGFVGSHPLPLAGDVDMTVVMNELFRP 219
BLAST of mRNA_H-paniculata_contig2126.5572.1 vs. uniprot
Match: A0A835Z461_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z461_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 6.140e-10 Identity = 49/174 (28.16%), Postives = 82/174 (47.13%), Query Frame = 3
Query: 432 LGTEHEDVQLADGGRAGGASSRQGEGVRG-----HIVLDTEVDVSARIFRITGAKLSGEIDAALHDLEWLMELQLKSSR------------------------EEFEPYVSHFAAANELGSDVAAAPALQEVCGLAYALQVATSHMPGWTGYVGSLQLPIPTDANITELLQELF 866
+G D Q A R G+ R E + IVLDTE+D+ R F++ A+++ +A L ++ ++ELQL+++ + + F + N L + +A A +QEV L YA++VA S++PGW G V LP+P ++ +L +LF
Sbjct: 1 MGLASTDAQKAQAMRFIGSRKRAAETGKQPIADPEIVLDTELDLQKRTFKVVRARVASASEATLASIDSVLELQLEAAAPPLQAVDDAQQAGEPAADPTEAAADRLQALCGTFVSLNSLPAGLAGAAVMQEVYSLGYAVRVAASNIPGWKGTVAGRPLPLPATEDLLAVLGDLF 174
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-10_004730.1 |
| Exons | 4 |
| Model size | 1418 |
| Cds size | 942 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig2126.5572.1 >prot_H-paniculata_contig2126.5572.1 ID=prot_H-paniculata_contig2126.5572.1|Name=mRNA_H-paniculata_contig2126.5572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=314bp
MANAPGASANAVQARVTEMLELLKARAPNLRPNVTPRPFKHAVSSNLLTL
CQTAEHRAAVQAFLVKRLGTEHEDVQLADGGRAGGASSRQGEGVRGHIVL
DTEVDVSARIFRITGAKLSGEIDAALHDLEWLMELQLKSSREEFEPYVSH
FAAANELGSDVAAAPALQEVCGLAYALQVATSHMPGWTGYVGSLQLPIPT
DANITELLQELFEPLLPLIPPSPEQKKQSPGKKGGSGKRPKSKSKDSKKD
DKRKENSAAISPGASGEGLTPATGKKGAGAKMSVGVGSSSSSKQDGVKGE
TSPKSTPKRKKKR* back to topmRNA from alignment at H-paniculata_contig2126:7747..12797+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig2126.5572.1 ID=mRNA_H-paniculata_contig2126.5572.1|Name=mRNA_H-paniculata_contig2126.5572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5051bp|location=Sequence derived from alignment at H-paniculata_contig2126:7747..12797+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TGGCAGCAAACAAGCTGCTTGGCAGTTTTGCAGAACCTACAAGCGTCGTT
CAGGTGATCTGTCCATCTCAAGCAGAAGTGTTGTGTGAACAGTGTCCGCG
GCTGCACCAGCAAGACTACTCGAGATCCAGGAGATCATCTGGCCGTTCAG
TTTATACAGACGGTATATGCGGGCTAATCTGACCTATACCCAACAGATAT
CAGGTACAGTCTATATTGGGGTCTTGAGCGATGGCAAACGCACCAGGAGC
AAGTGCTAACGCCGTTCAAGCACGGGTGACCGAGATGTTAGAATTGCTCA
AAGCACGTGCGCCGAACCTAAGGCCCAACGTAACGCCACGGCCATTCAAG
CACGCGGTGTCCTCCAACCTGTTGACGCTGTGCCAGACGGCGGAGCATCG
AGCGGCGGTGCAAGCATTTCTCGTTAAAAGATTAGGGACAGAGCACGAGG
ACGTTCAGCTCGCGGACGGCGGCAGGGCAGGGGGCGCGAGCAGCAGGCAG
GGGGAAGGGGTTCGTGGTCACATCGTGTTGGACACTGAAGTTGATGTGAG
CGCTAGGATCTTTCGCATCACAGGCGCGAAGGTAGGGGCTACTATGGGTG
ATCATGTCTAAGACATGTTGATTCAGCGTTGACGTTTGAATTTGTTGCTG
CAGTAGCACATGACAAGGTATTTCGCCCCTGCTCCGCCACCTCGGAGTAG
TACAACTAGAACTAGGGCAGTTGCCACCGAGAAAATGTATACCTTGGGTC
TTGCAGTCAATTAAAGGCACCTAGCTGTCTTCTGCTGTCTTGCTCTCATG
CGCTTTGCCAACGCAGTCCGGTCACACGTGCGCTCTGCTAACGCACACTA
GGATCGACAATTTAGGTTAGGGTTAGGGTTAGCGGTTAGGATTGATGGGT
GTGGGGTTGCTGCAAGCCCAATTAGGTATCATGGAACCAGTGTGATAAGT
GGGCGTTTTCCGTTGAACTCGGTTGGACGTCGAATAAAATGGCCTCTCAA
AGGTGATGTCCAATCGCCGGTTTCAACAAACGAGGAAAAGTTACCGGTTG
CCCAGGAAACGTATAGAATCGGTAAGAGCAAGTGACGACCCTAGGACCGG
AAAAACGCAAGCCCAAGCGTTTCGGAAAAGAAAGGGCGTACCTTCAGTTC
TTGTGGTGGTCAATAGATTTGACTTTTCGGTTGAAAGACCTATTAAATGA
GCGAGCACCGGCGATGAAATAGCCCTCGTTACCGCGAGGAAAGGGTGGTG
GGGTATTTATTGTGCAGAGGTCGTAAAGCCCACGTACCACCACCCCGCTC
GCGCAGCGGTCCTATGCGGTGCCTAAAAATGCCCAGGAAGCACCAAGTTG
TACCTTACTTTGGTCATTGGCCTATGTATTAATAGTATGCCATTTTGGTT
TCACCCCTTTTAGTGCCATTTTTAATATGCTGTTTCGGAACAAAAAAAAA
GCACGTGATAAAAACTGTCGAGCGCTGCTGTCGTTGTTTGTAGAAAGAAG
CATGCCAACTCCCTCTCTTTTGGTGTACCTTTCGTCTGAACAGGAATTTC
TGTCTGAACAGCAGCGGTCCCTATCCCCGTGATCATGCCACAAGTGGTGT
TGTTTCCAGTCTTTTCGGGTGGGGATCAATCCCGTGGAGATTAGGCGGCG
CTCGTCGCTATAGGGGTCAAGTTTATTAGAAATACAGACTCTGTGGTCTG
CAAGCCGTGGCGTTGTCGATTTCAGCAATAATAGTTAGATGGATTTGATG
TGTGACGTCCATAGACCGACTGCAAAACTAGTTGCGGTCGTCGGACCAAA
GTATCTCATCGTACAACAGAAAGGAGTAAGTTCGTCGGTGAGCTGAGAAA
GTACGGTAGGTCGAACTACCCGGCGACCAAGCAAATACTGATGCGTTACC
CCGGCCGTATGTATTTTATTGAGAGTGCAAGCGCGTGGTAACTCCATCAC
CTTCACTCGCCCTGGGATCCACTTTCCCACATTTGTTTTTTAGCCACATG
AGCACCATCTATACCATCTTTATTTTCTTATCTTTTGCATGAGCACGTGA
GCTTAACGGTCGGGGGGGTTTTCCTTTTCTTTTGTTAACCCCCGGAAGGC
CAAGGCTAAGGCAAAAACCTCTATCCGATGCTTCCATACCGAAGTACGTC
TACATTTCCTTGAACAGAACAGGTTTATTTGCTCCTCTGCGGGGTAGGCA
CCACCCCGGTTCGGCTGAACCAGGTAGGCAGTGTGGGGGTTGCACCCACT
AACAGACCTCTGACTAGACTTCCAGTCGTGCTCAGTTCACGAGCTATCCT
ACCCGTTCGGGCGTAGGTCCGTGGCGAAAAATGGAGTTCCGGCCTCGCGG
CACAAAACCCGGATCATAACAGTCGTTTGTGCCAATTGTGCGTGTCTCTG
CCAAAACATCAAGCTACAGAAGTCAACAGTGCCTTCGATTAAAGTTGACA
AAAGATTGATAAAAGGCACGAAGCATGGTGTCAACTGTTACTACATGAGT
GAGGGGTCGTATTTCGAGTTACGAGGCTTGCCTGTAATGTATCGCGTTCG
CGTAATAGACGTCCATGTGGTGTGCTTCTTGCTGGTTCGTCGTGGGTGCT
CGGTATGAAACGGCTGATACGTGGTTGCTCCCAGCCATATGCTCCGTTAT
GTACAGTGTCGCTCATGTGCTGCAATAAAGTGTTATGTGTTAGTTGGTAT
AAATTGTACATGTATGTGGTCGTCTGTTGTTCGTCTCTACTTCGGTTGCA
TCGGTAGTTATCAGGGGAGATCGACGCCGCGCTGCACGACCTAGAGTGGT
TGATGGAACTACAGCTAAAGTCTAGCCGAGAGGAGGTGAGACATAAACCG
CAATTTACGCAGATAGCTTACTATCACCTCAGGACTTGCGCGAAAAGTTC
GTTCAGGAGCGGGACTAGCTAGAAAGTTAAAAAAATATAACAGTAATATT
CGGTCAACGTCTGACGAAAGTACATCGTAGTTGCGAAGGGAATCTTGTTG
CAGGTATTTTATTCAATTTGAAAATACTGAAACAAATCCATTTTTCACTA
GTCGGACAACGTCTGCTAAATCAAAATTGGCAGGAAATCGCGACGGTGTT
GTATCTGGTGTTGCAGAAAGTACATTTTTTTGTTGGAGCTCTCATCTCTT
TTGTCGCTTACCCAATTTTGTTTGGTGTGCGTTATCCACATCTGTGCAGA
GAGCTCTGTTTTGATCCGTGATACGCGTGGTTGTCTGATCCGCTTTTCAA
GGGCTCTTATCTACCCCTGTTTTTTGTTGAGTTAAATACGTGGAGACTCC
TGCTAGCCAGCAGAGCAGAGATTTTGGGGGTGGCCATGGGCAAAAGCGTG
TCAGATATTGCCCTGGTTGTTTTCTTTCTCTCTTTTTACCTGTTGTTTTT
AGATTGTGGGGACGGCATACGCGGACACTGTTACAAACAAACTGCTGTCG
ACTATCGGTTTCAAGTCTCTTCCTTTACTAATTTGTCAGACACATGGTTA
CATTATTGCTTAAAGGAACCTGTCGCAGCCTCATGGTGTCGCTCTAGTTA
TCTGCCCACTTACATTCCTGATCCAACTGAACATCACGACCTATGTCGCG
TGGGTATTCCCCTCGTGTCTGTTGCCTTGGTTTGTGATTTCCCGCCTCGC
TAACTCACGCAGTTCGAGCCGTACGTGAGTCACTTTGCTGCTGCCAACGA
ACTGGGTTCGGATGTGGCGGCGGCGCCCGCGCTGCAAGAGGTTTGCGGCC
TTGCTTACGCCCTTCAGGTGGCAACGAGGTAATTACTCTACAGCAGATTG
TTGTTTCAAGTAGGTTCCCGTTCTAACGGTGAGATCTTTTCTGGAAAAGC
TTTAGCTAAAATCCTTGCTTACTCTGTATTGGATGCCGGAATCGAAACGC
GACGAGTTGCAGACCCGTATGCGGCTAAGTAATGCGAGCGGTATAGCCTA
CTGAGGAGTCCATTGGTGCAACTCGTGAGGCATACTCGTATGTTATTATA
TTCTCAAGTGACTTTTTGTCGAAACTCTACAATGGTTATTTAGTGTAAGT
GTAAAACAGTGAATGCTATCCTCTAAACCGAATCTTGAGCGTCGTTCTTG
GTTTTTCCTTAGACTGCAGTATTCGATACCTTTGACTTGCGGATCATTTT
TTTATGTTTAGGAATAGTTATCCATGTCTCGAAACGCCAATTACACGAAA
ACCCTTTCGATTTTACCAATTTCAACACTCACTAGTACTTGTTTATCCCG
CGTAGTTTGGTCGGCTTGTGGATCAGTAATCCAGCAAGTTGAAGAGGTTT
AGTCCTTCTCCCCTCCCCATGCACCTCCGGTACATATCGCACACCCGTCG
CGTTATCATGTTTGTTTCCGAAACGAACCGCCCTTCCAAACGGCGAAAAA
AACAACAGTCATATGCCAGGGTGGACAGGGTACGTCGGGTCGCTACAGCT
ACCGATCCCGACCGACGCAAATATAACGGAGCTCCTGCAAGAACTGTTTG
AGCCGCTGCTCCCACTTATCCCCCCCTCGCCGGAACAAAAGAAGCAATCG
CCAGGCAAGAAAGGGGGCAGCGGCAAGCGACCGAAAAGCAAATCGAAGGA
CTCGAAGAAGGACGACAAGCGGAAAGAAAACAGTGCGGCTATTTCGCCAG
GTGCTAGTGGGGAAGGGTTGACACCCGCGACGGGGAAAAAGGGGGCCGGG
GCAAAGATGTCCGTGGGCGTCGGCAGCAGCAGTAGCAGTAAGCAGGACGG
AGTCAAAGGGGAAACGTCTCCGAAAAGCACTCCCAAGCGAAAGAAGAAGC
GATAGCACCGGCACACATCCATCCATCCCATACATATGCCTTGCTTTGAC
TCTGCAGTATATTCCGTGGTTTTGCCGTTTAATTGGAATATCGAACTCTC
ACTTTGTCTTGGCGGGCATTGTTGATCATGCCTGGGGGACACATGAGACT
CCACGCTAAGGGCACAAGCAAAGAAGCGCTTAGGAGGTGGTGAAAATGCC
CAGTGCGCTGGGCTGTTGTGAATATCGCTTATTCGCGTGGTTTCTAGACG
A back to topCoding sequence (CDS) from alignment at H-paniculata_contig2126:7747..12797+ >mRNA_H-paniculata_contig2126.5572.1 ID=mRNA_H-paniculata_contig2126.5572.1|Name=mRNA_H-paniculata_contig2126.5572.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1884bp|location=Sequence derived from alignment at H-paniculata_contig2126:7747..12797+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGCAAACGCACCAGGAGCAAGTGCTAACGCCGTTCAAGCACGGGTGAC
CGAGATGTTAGAATTGCTCAAAGCACGTGCGCCGAACCTAAGGCCCAACG
TAACGCCACGGCCATTCAAGCACGCGGTGTCCTCCAACCTGTTGACGCTG
TGCCAGACGGCGGAGCATCGAGCGGCGGTGCAAGCATTTCTCGTTAAAAG
ATTAGGGACAGAGCACGAGGACGTTCAGCTCGCGGACGGCGGCAGGGCAG
GGGGCGCGAGCAGCAGGCAGGGGGAAGGGGTTCGTGGTCACATCGTGTTG
GACACTGAAGTTGATGTGAGCGCTAGGATCTTTCGCATCACAGGCGCGAA
GATGGCAAACGCACCAGGAGCAAGTGCTAACGCCGTTCAAGCACGGGTGA
CCGAGATGTTAGAATTGCTCAAAGCACGTGCGCCGAACCTAAGGCCCAAC
GTAACGCCACGGCCATTCAAGCACGCGGTGTCCTCCAACCTGTTGACGCT
GTGCCAGACGGCGGAGCATCGAGCGGCGGTGCAAGCATTTCTCGTTAAAA
GATTAGGGACAGAGCACGAGGACGTTCAGCTCGCGGACGGCGGCAGGGCA
GGGGGCGCGAGCAGCAGGCAGGGGGAAGGGGTTCGTGGTCACATCGTGTT
GGACACTGAAGTTGATGTGAGCGCTAGGATCTTTCGCATCACAGGCGCGA
AGTTATCAGGGGAGATCGACGCCGCGCTGCACGACCTAGAGTGGTTGATG
GAACTACAGCTAAAGTCTAGCCGAGAGGAGTTATCAGGGGAGATCGACGC
CGCGCTGCACGACCTAGAGTGGTTGATGGAACTACAGCTAAAGTCTAGCC
GAGAGGAGTTCGAGCCGTACGTGAGTCACTTTGCTGCTGCCAACGAACTG
GGTTCGGATGTGGCGGCGGCGCCCGCGCTGCAAGAGGTTTGCGGCCTTGC
TTACGCCCTTCAGGTGGCAACGAGTTCGAGCCGTACGTGAGTCACTTTGC
TGCTGCCAACGAACTGGGTTCGGATGTGGCGGCGGCGCCCGCGCTGCAAG
AGGTTTGCGGCCTTGCTTACGCCCTTCAGGTGGCAACGAGTCATATGCCA
GGGTGGACAGGGTACGTCGGGTCGCTACAGCTACCGATCCCGACCGACGC
AAATATAACGGAGCTCCTGCAAGAACTGTTTGAGCCGCTGCTCCCACTTA
TCCCCCCCTCGCCGGAACAAAAGAAGCAATCGCCAGGCAAGAAAGGGGGC
AGCGGCAAGCGACCGAAAAGCAAATCGAAGGACTCGAAGAAGGACGACAA
GCGGAAAGAAAACAGTGCGGCTATTTCGCCAGGTGCTAGTGGGGAAGGGT
TGACACCCGCGACGGGGAAAAAGGGGGCCGGGGCAAAGATGTCCGTGGGC
GTCGGCAGCAGCAGTAGCAGTAAGCAGGACGGAGTCAAAGGGGAAACGTC
TCCGAAAAGCACTCCCAAGCGAAAGAAGAAGCGATAGTCATATGCCAGGG
TGGACAGGGTACGTCGGGTCGCTACAGCTACCGATCCCGACCGACGCAAA
TATAACGGAGCTCCTGCAAGAACTGTTTGAGCCGCTGCTCCCACTTATCC
CCCCCTCGCCGGAACAAAAGAAGCAATCGCCAGGCAAGAAAGGGGGCAGC
GGCAAGCGACCGAAAAGCAAATCGAAGGACTCGAAGAAGGACGACAAGCG
GAAAGAAAACAGTGCGGCTATTTCGCCAGGTGCTAGTGGGGAAGGGTTGA
CACCCGCGACGGGGAAAAAGGGGGCCGGGGCAAAGATGTCCGTGGGCGTC
GGCAGCAGCAGTAGCAGTAAGCAGGACGGAGTCAAAGGGGAAACGTCTCC
GAAAAGCACTCCCAAGCGAAAGAAGAAGCGATAG back to top
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