mRNA_H-paniculata_contig2116.5540.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig2116.5540.1
Unique NamemRNA_H-paniculata_contig2116.5540.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig2116.5540.1 vs. uniprot
Match: A0A6H5K5M7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5M7_9PHAE)

HSP 1 Score: 88.6 bits (218), Expect = 1.760e-17
Identity = 53/125 (42.40%), Postives = 69/125 (55.20%), Query Frame = 1 
Query:   55 MTVHFPPPPMSLLALFNRDLHGYDAAAPD-DDKWAELPFVVVESWGGVEVEELQPSAERDLQSDAPMSLISPPSKSNADEYRRFKRIASGNFPE----------TPCKMDVETAANGIASFNTNS 396
            M +HFPPPP SLL +F+RDLHG+D+AA D DD+W ELPF+V+ESWGG   E   P  +   Q  AP+S +        DEYR F+ IAS +             +P      TA+ G+   N  S
Sbjct:  347 MLMHFPPPPQSLLPVFDRDLHGFDSAARDLDDRWGELPFLVLESWGGSGEE---PKTDPAPQEPAPLSPMQ-----GGDEYRLFQEIASNSLHRKKPPAAAAGSSPLVNGKATASGGVGGANDTS 463
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BLAST of mRNA_H-paniculata_contig2116.5540.1 vs. uniprot
Match: D8LJW1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJW1_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 3.300e-17
Identity = 47/92 (51.09%), Postives = 60/92 (65.22%), Query Frame = 1 
Query:   55 MTVHFPPPPMSLLALFNRDLHGYDAAAPD-DDKWAELPFVVVESWGGVEVEELQPSAERDLQSDAPMSLISPPSKSNADEYRRFKRIASGNF 327
            M +HFPPPP SLL +F+RDLHG+D+AA D DD+W ELPF+VVESWGG   E   P  +   Q  AP+S +        DE+R F+ IAS + 
Sbjct:  640 MFMHFPPPPQSLLPVFDRDLHGFDSAARDLDDRWGELPFLVVESWGGSGEE---PKTDLPPQEPAPLSPMQ-----GGDEFRLFQEIASNSL 723
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig2116.5540.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5M7_9PHAE1.760e-1742.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJW1_ECTSI3.300e-1751.09Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig2116contigH-paniculata_contig2116:18677..19544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.3
Seed ortholog evalue4.4e-16
Seed eggNOG ortholog2880.D8LJW1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.carboxylic ester hydrolase activity
EggNOG OGsKOG2205@1,KOG2205@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size473
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929562.5777376-CDS-H-paniculata_contig2116:18676..189051622929562.5777376-CDS-H-paniculata_contig2116:18676..18905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2116 18677..18905 +
1691480915.1795251-CDS-H-paniculata_contig2116:18676..189051691480915.1795251-CDS-H-paniculata_contig2116:18676..18905Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2116 18677..18905 +
1622929562.5922127-CDS-H-paniculata_contig2116:19301..195431622929562.5922127-CDS-H-paniculata_contig2116:19301..19543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2116 19302..19543 +
1691480915.1885815-CDS-H-paniculata_contig2116:19301..195431691480915.1885815-CDS-H-paniculata_contig2116:19301..19543Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig2116 19302..19543 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig2116.5540.1prot_H-paniculata_contig2116.5540.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig2116 18677..19543 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig2116.5540.1

>prot_H-paniculata_contig2116.5540.1 ID=prot_H-paniculata_contig2116.5540.1|Name=mRNA_H-paniculata_contig2116.5540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=157bp
ASAGEERASGALEYSLAAMTVHFPPPPMSLLALFNRDLHGYDAAAPDDDK
WAELPFVVVESWGGVEVEELQPSAERDLQSDAPMSLISPPSKSNADEYRR
FKRIASGNFPETPCKMDVETAANGIASFNTNSNKHHSMRTVAGRHTNDKM
INDIVAL
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mRNA from alignment at H-paniculata_contig2116:18677..19544+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig2116.5540.1 ID=mRNA_H-paniculata_contig2116.5540.1|Name=mRNA_H-paniculata_contig2116.5540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=868bp|location=Sequence derived from alignment at H-paniculata_contig2116:18677..19544+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTCGGCGGGCGAGGAGCGGGCATCGGGGGCCCTAGAGTACTCCCTGGC
GGCGATGACAGTGCACTTCCCACCACCACCCATGAGCTTGCTGGCGCTGT
TCAATCGAGATCTTCACGGGTATGATGCTGCGGCTCCGGACGACGACAAG
TGGGCGGAGTTGCCCTTCGTGGTGGTGGAGTCTTGGGGCGGCGTGGAGGT
CGAGGAATTGCAACCATCTGCCGAGAGAGGTGAGACCTCGGTATTTATTT
TGTTGACGATTCTTGTGCAGTAGGTTCGATTGCCTGTGGGAGTAGTCGGT
CGAGGGGGCGAGACTGCTTGCAATCTCGGTCTCCTTGTTGGTAGCGGACA
GCGAACATAGTTTTGCTTGGTCAAGATTATATAAGAAAACGTGGCGTTCC
AGCCCAGTACTACAGTTGCCCCGTCGTTTTTTTTCCATATAGATCCCGTT
TCGAGGTTTTGGTGATGCTGCCGAGCCAAGTGCCTCAACGCTGTCTGGAG
CACGCGTGATCGTGCCGCTACGTGGTAATTTTTCAAGTTCTGTTTCTGTC
GGTCGTCTTTTCTCCATAGCCGCCGTCTCCCCGATCGCGCGTTCTTGTTC
TCGGTTACTGCACACGCTGTCTCAGACCTCCAGTCCGACGCACCTATGTC
GCTGATTTCCCCCCCGTCAAAATCAAACGCCGACGAGTACCGCCGGTTCA
AGCGGATAGCAAGCGGCAATTTCCCCGAAACTCCTTGCAAGATGGATGTT
GAAACGGCGGCGAATGGCATTGCCTCCTTCAATACCAACAGCAATAAACA
CCACAGCATGCGCACCGTCGCTGGCCGCCACACGAACGACAAAATGATCA
ATGATATCGTTGCGCTTA
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Coding sequence (CDS) from alignment at H-paniculata_contig2116:18677..19544+

>mRNA_H-paniculata_contig2116.5540.1 ID=mRNA_H-paniculata_contig2116.5540.1|Name=mRNA_H-paniculata_contig2116.5540.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=942bp|location=Sequence derived from alignment at H-paniculata_contig2116:18677..19544+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCGTCGGCGGGCGAGGAGCGGGCATCGGGGGCCCTAGAGTACTCCCTGGC
GGCGATGACAGTGCACTTCCCACCACCACCCATGAGCTTGCTGGCGCTGT
TCAATCGAGATCTTCACGGGTATGATGCTGCGGCTCCGGACGACGACAAG
TGGGCGGAGTTGCCCTTCGTGGTGGTGGAGTCTTGGGGCGGCGTGGAGGT
CGAGGAATTGCAACCATCTGCCGAGAGAGGCGTCGGCGGGCGAGGAGCGG
GCATCGGGGGCCCTAGAGTACTCCCTGGCGGCGATGACAGTGCACTTCCC
ACCACCACCCATGAGCTTGCTGGCGCTGTTCAATCGAGATCTTCACGGGT
ATGATGCTGCGGCTCCGGACGACGACAAGTGGGCGGAGTTGCCCTTCGTG
GTGGTGGAGTCTTGGGGCGGCGTGGAGGTCGAGGAATTGCAACCATCTGC
CGAGAGAGACCTCCAGTCCGACGCACCTATGTCGCTGATTTCCCCCCCGT
CAAAATCAAACGCCGACGAGTACCGCCGGTTCAAGCGGATAGCAAGCGGC
AATTTCCCCGAAACTCCTTGCAAGATGGATGTTGAAACGGCGGCGAATGG
CATTGCCTCCTTCAATACCAACAGCAATAAACACCACAGCATGCGCACCG
TCGCTGGCCGCCACACGAACGACAAAATGATCAATGATATCGTTGCGCTT
ACCTCCAGTCCGACGCACCTATGTCGCTGATTTCCCCCCCGTCAAAATCA
AACGCCGACGAGTACCGCCGGTTCAAGCGGATAGCAAGCGGCAATTTCCC
CGAAACTCCTTGCAAGATGGATGTTGAAACGGCGGCGAATGGCATTGCCT
CCTTCAATACCAACAGCAATAAACACCACAGCATGCGCACCGTCGCTGGC
CGCCACACGAACGACAAAATGATCAATGATATCGTTGCGCTT
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