mRNA_H-paniculata_contig21144.5529.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI) HSP 1 Score: 143 bits (361), Expect = 1.550e-37 Identity = 65/108 (60.19%), Postives = 82/108 (75.93%), Query Frame = 1
Query: 1 LAGNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTHQ 324
L GNPW PPW+VI+GGW ++++++ + +SG V KVV +GAV AGKT+LA+GL GK A TL RTRG+DVHIQPW PD + PLEV+IWDFAGH DY+STHQ
Sbjct: 150 LKGNPWETPPWNVIQGGWDQVVSFHEGLSQSGGQVVPSLKVVLVGAVGAGKTTLARGLLDGKIAQTLPP-RTRGIDVHIQPWVPDFDPPLEVLIWDFAGHDDYHSTHQ 256
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: A0A6H5L6I0_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6I0_9PHAE) HSP 1 Score: 131 bits (330), Expect = 2.250e-33 Identity = 62/109 (56.88%), Postives = 79/109 (72.48%), Query Frame = 1
Query: 1 LAGNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTV-HRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTHQ 324
L N W +PPW VI+GGW +I++Y+ + +SG+ V KVVF+GAV AGKT+L +GL GK A L RTRGVDVH+ PW P+ + P+EV+IWDFAGH DYYSTHQ
Sbjct: 39 LELNRWNKPPWQVIQGGWYQVISFYEGLAQSGAVAVVPSLKVVFVGAVHAGKTTLTRGLLDGKLAK-LPPPRTRGVDVHVNPWTPNFDPPVEVVIWDFAGHDDYYSTHQ 146
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI) HSP 1 Score: 124 bits (312), Expect = 6.290e-31 Identity = 60/109 (55.05%), Postives = 75/109 (68.81%), Query Frame = 1
Query: 1 LAGNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTV-HRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTHQ 324
L N W PPW VI+GGW +I++Y+ + +SG V KVV +GAV AGKT+L +GL GK A + RTRGVDVHI PW P+ + +EV+IWDFAGH DYYSTHQ
Sbjct: 144 LELNRWKNPPWQVIQGGWYQVISFYEGLAQSGGVAVVPSLKVVLVGAVHAGKTTLTRGLLDGKLAK-VPPPRTRGVDVHINPWTPNFDPAVEVVIWDFAGHDDYYSTHQ 251
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI) HSP 1 Score: 86.3 bits (212), Expect = 1.980e-17 Identity = 39/105 (37.14%), Postives = 66/105 (62.86%), Query Frame = 1
Query: 10 NPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTHQ 324
NPW PP V+ G++ + +++DV+R G ++ K+V +G AGKT++ + + G+ ++ +RT G+++ W+P PL+V +WDFAG ADYYS+HQ
Sbjct: 248 NPWSRPPSTVLESGFERALGWWEDVKRFGEGKSNKLKMVLVGLAGAGKTTIVRHMT-GR-SVPKRSDRTVGIEITTD-WKPGDEVPLQVSVWDFAGQADYYSSHQ 349
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: A0A7S2IWM0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IWM0_9EUKA) HSP 1 Score: 79.0 bits (193), Expect = 7.300e-15 Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = 1
Query: 1 LAGNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADY 309
++ NP PP V R G I Y++++++SGSTT ++V +GA LAGKTSL +GL G P + +ERT +D+H P +Q + + +WD AG +Y
Sbjct: 977 VSRNPLQRPPLSVARQGIDAIRRYFNELKKSGSTTSRAARLVLIGAGLAGKTSLQRGLRHGAPRPSKLDERTIQLDIHTLPLGSGADQVV-LSMWDLAGQPEY 1078
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: UPI001601530D (malignant fibrous histiocytoma-amplified sequence 1 homolog n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601530D) HSP 1 Score: 78.6 bits (192), Expect = 1.000e-14 Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 1
Query: 1 LAGNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTHQ 324
+ NP + PP D+ G + + Y++D+ S ++ + KVV LG V AGKTSLA L+ G LT E+RT G++V+ L V ++DF GH Y THQ
Sbjct: 767 IDNNPLVSPPIDMFEHGLRGLCKYFEDMHVSSASELPTGKVVLLGEVFAGKTSLANALQLGHSKLTKVEDRTEGINVN----NTRLGAQLLVTVYDFGGHESYRLTHQ 870
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: B7KEE8_GLOC7 (Miro domain protein n=1 Tax=Gloeothece citriformis (strain PCC 7424) TaxID=65393 RepID=B7KEE8_GLOC7) HSP 1 Score: 78.2 bits (191), Expect = 1.350e-14 Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query: 25 PPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTHQ 324
PP ++ + G + I Y+ ++ G T++ K++ LG AGKTSLAK +E + DE+ T+G+DV + D NQ V IWDF G Y+ THQ
Sbjct: 316 PPLEIAQQGIEAIREYFRQKQQEGEDTLYEAKLIILGEAGAGKTSLAKKIENPNYKVPADEDSTQGIDVKEWHFTLDNNQDFRVNIWDFGGQEIYHETHQ 415
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: C3XU23_BRAFL (Roc domain-containing protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3XU23_BRAFL) HSP 1 Score: 77.4 bits (189), Expect = 2.500e-14 Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 1
Query: 1 LAGNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTHQ 324
+ NP I PP D+ G + + Y++D+ S ++ + KVV LG V AGKTSLA L+ G LT E+RT G++V+ L V ++DF GH Y THQ
Sbjct: 272 IDNNPLISPPIDMFEHGLRGLCKYFEDMHVSSASELPTGKVVLLGEVFAGKTSLANALQLGHSKLTKVEDRTEGINVNSTRL----GGQLLVTMYDFGGHESYRLTHQ 375
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: A0A8K0AC65_BRALA (MFHAS1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0AC65_BRALA) HSP 1 Score: 75.9 bits (185), Expect = 8.580e-14 Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 1
Query: 1 LAGNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTHQ 324
+ NP PP D+ G + Y++D+ S ++ + KVV LG V AGKTSLA L+ G LT E+RT G++V+ L V ++DF GH Y THQ
Sbjct: 69 VDNNPLTSPPVDMFEHGLSGLSQYFEDIHVSSASELPTGKVVLLGEVFAGKTSLANALQLGHSKLTKVEDRTEGINVNSTRM----GGQLLVTVYDFGGHESYRLTHQ 172
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: A0A1U8CW62_ALLSI (malignant fibrous histiocytoma-amplified sequence 1 homolog n=5 Tax=Crocodylia TaxID=1294634 RepID=A0A1U8CW62_ALLSI) HSP 1 Score: 75.9 bits (185), Expect = 8.620e-14 Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 1
Query: 7 GNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTH 321
GNP EPP +V GG + I++Y+ ++ + R K +FLGA LAGK+++ K L+Q + E RT G++ I +R Q + WDFAG +YY TH
Sbjct: 183 GNPLREPPGEVCAGGIQQILSYFSQLQTCQAQEDRRVKTMFLGASLAGKSTICKSLQQRRAVPLSKEARTIGIE--ISEFRI---QDFTFLFWDFAGQLEYYMTH 282 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig21144.5529.1 >prot_H-paniculata_contig21144.5529.1 ID=prot_H-paniculata_contig21144.5529.1|Name=mRNA_H-paniculata_contig21144.5529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp LAGNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGback to top mRNA from alignment at H-paniculata_contig21144:764..1087+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig21144.5529.1 ID=mRNA_H-paniculata_contig21144.5529.1|Name=mRNA_H-paniculata_contig21144.5529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=324bp|location=Sequence derived from alignment at H-paniculata_contig21144:764..1087+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig21144:764..1087+ >mRNA_H-paniculata_contig21144.5529.1 ID=mRNA_H-paniculata_contig21144.5529.1|Name=mRNA_H-paniculata_contig21144.5529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig21144:764..1087+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |