mRNA_H-paniculata_contig21144.5529.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig21144.5529.1
Unique NamemRNA_H-paniculata_contig21144.5529.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: D8LLG1_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLG1_ECTSI)

HSP 1 Score: 143 bits (361), Expect = 1.550e-37
Identity = 65/108 (60.19%), Postives = 82/108 (75.93%), Query Frame = 1
Query:    1 LAGNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTHQ 324
            L GNPW  PPW+VI+GGW  ++++++ + +SG   V   KVV +GAV AGKT+LA+GL  GK A TL   RTRG+DVHIQPW PD + PLEV+IWDFAGH DY+STHQ
Sbjct:  150 LKGNPWETPPWNVIQGGWDQVVSFHEGLSQSGGQVVPSLKVVLVGAVGAGKTTLARGLLDGKIAQTLPP-RTRGIDVHIQPWVPDFDPPLEVLIWDFAGHDDYHSTHQ 256          
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: A0A6H5L6I0_9PHAE (Roc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6I0_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 2.250e-33
Identity = 62/109 (56.88%), Postives = 79/109 (72.48%), Query Frame = 1
Query:    1 LAGNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTV-HRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTHQ 324
            L  N W +PPW VI+GGW  +I++Y+ + +SG+  V    KVVF+GAV AGKT+L +GL  GK A  L   RTRGVDVH+ PW P+ + P+EV+IWDFAGH DYYSTHQ
Sbjct:   39 LELNRWNKPPWQVIQGGWYQVISFYEGLAQSGAVAVVPSLKVVFVGAVHAGKTTLTRGLLDGKLAK-LPPPRTRGVDVHVNPWTPNFDPPVEVVIWDFAGHDDYYSTHQ 146          
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: D7FUH6_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH6_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 6.290e-31
Identity = 60/109 (55.05%), Postives = 75/109 (68.81%), Query Frame = 1
Query:    1 LAGNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTV-HRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTHQ 324
            L  N W  PPW VI+GGW  +I++Y+ + +SG   V    KVV +GAV AGKT+L +GL  GK A  +   RTRGVDVHI PW P+ +  +EV+IWDFAGH DYYSTHQ
Sbjct:  144 LELNRWKNPPWQVIQGGWYQVISFYEGLAQSGGVAVVPSLKVVLVGAVHAGKTTLTRGLLDGKLAK-VPPPRTRGVDVHINPWTPNFDPAVEVVIWDFAGHDDYYSTHQ 251          
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: D8LKS5_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKS5_ECTSI)

HSP 1 Score: 86.3 bits (212), Expect = 1.980e-17
Identity = 39/105 (37.14%), Postives = 66/105 (62.86%), Query Frame = 1
Query:   10 NPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTHQ 324
            NPW  PP  V+  G++  + +++DV+R G    ++ K+V +G   AGKT++ + +  G+ ++    +RT G+++    W+P    PL+V +WDFAG ADYYS+HQ
Sbjct:  248 NPWSRPPSTVLESGFERALGWWEDVKRFGEGKSNKLKMVLVGLAGAGKTTIVRHMT-GR-SVPKRSDRTVGIEITTD-WKPGDEVPLQVSVWDFAGQADYYSSHQ 349          
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: A0A7S2IWM0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2IWM0_9EUKA)

HSP 1 Score: 79.0 bits (193), Expect = 7.300e-15
Identity = 40/103 (38.83%), Postives = 61/103 (59.22%), Query Frame = 1
Query:    1 LAGNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADY 309
            ++ NP   PP  V R G   I  Y++++++SGSTT    ++V +GA LAGKTSL +GL  G P  +  +ERT  +D+H  P     +Q + + +WD AG  +Y
Sbjct:  977 VSRNPLQRPPLSVARQGIDAIRRYFNELKKSGSTTSRAARLVLIGAGLAGKTSLQRGLRHGAPRPSKLDERTIQLDIHTLPLGSGADQVV-LSMWDLAGQPEY 1078          
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: UPI001601530D (malignant fibrous histiocytoma-amplified sequence 1 homolog n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=UPI001601530D)

HSP 1 Score: 78.6 bits (192), Expect = 1.000e-14
Identity = 41/108 (37.96%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    1 LAGNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTHQ 324
            +  NP + PP D+   G + +  Y++D+  S ++ +   KVV LG V AGKTSLA  L+ G   LT  E+RT G++V+           L V ++DF GH  Y  THQ
Sbjct:  767 IDNNPLVSPPIDMFEHGLRGLCKYFEDMHVSSASELPTGKVVLLGEVFAGKTSLANALQLGHSKLTKVEDRTEGINVN----NTRLGAQLLVTVYDFGGHESYRLTHQ 870          
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: B7KEE8_GLOC7 (Miro domain protein n=1 Tax=Gloeothece citriformis (strain PCC 7424) TaxID=65393 RepID=B7KEE8_GLOC7)

HSP 1 Score: 78.2 bits (191), Expect = 1.350e-14
Identity = 38/100 (38.00%), Postives = 56/100 (56.00%), Query Frame = 1
Query:   25 PPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTHQ 324
            PP ++ + G + I  Y+   ++ G  T++  K++ LG   AGKTSLAK +E     +  DE+ T+G+DV    +  D NQ   V IWDF G   Y+ THQ
Sbjct:  316 PPLEIAQQGIEAIREYFRQKQQEGEDTLYEAKLIILGEAGAGKTSLAKKIENPNYKVPADEDSTQGIDVKEWHFTLDNNQDFRVNIWDFGGQEIYHETHQ 415          
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: C3XU23_BRAFL (Roc domain-containing protein (Fragment) n=1 Tax=Branchiostoma floridae TaxID=7739 RepID=C3XU23_BRAFL)

HSP 1 Score: 77.4 bits (189), Expect = 2.500e-14
Identity = 42/108 (38.89%), Postives = 59/108 (54.63%), Query Frame = 1
Query:    1 LAGNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTHQ 324
            +  NP I PP D+   G + +  Y++D+  S ++ +   KVV LG V AGKTSLA  L+ G   LT  E+RT G++V+           L V ++DF GH  Y  THQ
Sbjct:  272 IDNNPLISPPIDMFEHGLRGLCKYFEDMHVSSASELPTGKVVLLGEVFAGKTSLANALQLGHSKLTKVEDRTEGINVNSTRL----GGQLLVTMYDFGGHESYRLTHQ 375          
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: A0A8K0AC65_BRALA (MFHAS1 protein n=1 Tax=Branchiostoma lanceolatum TaxID=7740 RepID=A0A8K0AC65_BRALA)

HSP 1 Score: 75.9 bits (185), Expect = 8.580e-14
Identity = 41/108 (37.96%), Postives = 57/108 (52.78%), Query Frame = 1
Query:    1 LAGNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTHQ 324
            +  NP   PP D+   G   +  Y++D+  S ++ +   KVV LG V AGKTSLA  L+ G   LT  E+RT G++V+           L V ++DF GH  Y  THQ
Sbjct:   69 VDNNPLTSPPVDMFEHGLSGLSQYFEDIHVSSASELPTGKVVLLGEVFAGKTSLANALQLGHSKLTKVEDRTEGINVNSTRM----GGQLLVTVYDFGGHESYRLTHQ 172          
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Match: A0A1U8CW62_ALLSI (malignant fibrous histiocytoma-amplified sequence 1 homolog n=5 Tax=Crocodylia TaxID=1294634 RepID=A0A1U8CW62_ALLSI)

HSP 1 Score: 75.9 bits (185), Expect = 8.620e-14
Identity = 40/105 (38.10%), Postives = 59/105 (56.19%), Query Frame = 1
Query:    7 GNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAGKTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGHADYYSTH 321
            GNP  EPP +V  GG + I++Y+  ++   +    R K +FLGA LAGK+++ K L+Q +      E RT G++  I  +R    Q    + WDFAG  +YY TH
Sbjct:  183 GNPLREPPGEVCAGGIQQILSYFSQLQTCQAQEDRRVKTMFLGASLAGKSTICKSLQQRRAVPLSKEARTIGIE--ISEFRI---QDFTFLFWDFAGQLEYYMTH 282          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig21144.5529.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LLG1_ECTSI1.550e-3760.19LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5L6I0_9PHAE2.250e-3356.88Roc domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7FUH6_ECTSI6.290e-3155.05LRR-GTPase of the ROCO family, incomplete sequence... [more]
D8LKS5_ECTSI1.980e-1737.14LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A7S2IWM0_9EUKA7.300e-1538.83Hypothetical protein (Fragment) n=1 Tax=Haptolina ... [more]
UPI001601530D1.000e-1437.96malignant fibrous histiocytoma-amplified sequence ... [more]
B7KEE8_GLOC71.350e-1438.00Miro domain protein n=1 Tax=Gloeothece citriformis... [more]
C3XU23_BRAFL2.500e-1438.89Roc domain-containing protein (Fragment) n=1 Tax=B... [more]
A0A8K0AC65_BRALA8.580e-1437.96MFHAS1 protein n=1 Tax=Branchiostoma lanceolatum T... [more]
A0A1U8CW62_ALLSI8.620e-1438.10malignant fibrous histiocytoma-amplified sequence ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig21144contigH-paniculata_contig21144:764..1087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score143.3
Seed ortholog evalue6.7e-32
Seed eggNOG ortholog2880.D8LLG1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of response to stimulus
EggNOG OGsCOG4886@1,KOG0619@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size324
Cds size324
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929561.6225317-CDS-H-paniculata_contig21144:763..10871622929561.6225317-CDS-H-paniculata_contig21144:763..1087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21144 764..1087 +
1691480914.744814-CDS-H-paniculata_contig21144:763..10871691480914.744814-CDS-H-paniculata_contig21144:763..1087Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig21144 764..1087 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig21144.5529.1prot_H-paniculata_contig21144.5529.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig21144 764..1087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig21144.5529.1

>prot_H-paniculata_contig21144.5529.1 ID=prot_H-paniculata_contig21144.5529.1|Name=mRNA_H-paniculata_contig21144.5529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=108bp
LAGNPWIEPPWDVIRGGWKIIINYYDDVRRSGSTTVHRFKVVFLGAVLAG
KTSLAKGLEQGKPALTLDEERTRGVDVHIQPWRPDPNQPLEVIIWDFAGH
ADYYSTHQ
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mRNA from alignment at H-paniculata_contig21144:764..1087+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig21144.5529.1 ID=mRNA_H-paniculata_contig21144.5529.1|Name=mRNA_H-paniculata_contig21144.5529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=324bp|location=Sequence derived from alignment at H-paniculata_contig21144:764..1087+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGCTGGCAATCCCTGGATCGAACCGCCGTGGGACGTTATTCGCGGTGG CTGGAAGATCATCATCAACTACTACGACGATGTTAGACGCTCAGGATCAA CTACCGTTCACAGATTCAAGGTGGTGTTTCTCGGTGCCGTATTGGCTGGG AAAACAAGTCTGGCAAAAGGACTTGAGCAGGGAAAGCCGGCTCTTACGCT GGATGAGGAGCGTACTCGGGGCGTGGATGTGCACATTCAGCCGTGGCGAC CTGATCCTAATCAGCCGCTGGAGGTCATAATATGGGACTTCGCTGGGCAC GCGGATTACTACTCAACACATCAG
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Coding sequence (CDS) from alignment at H-paniculata_contig21144:764..1087+

>mRNA_H-paniculata_contig21144.5529.1 ID=mRNA_H-paniculata_contig21144.5529.1|Name=mRNA_H-paniculata_contig21144.5529.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=648bp|location=Sequence derived from alignment at H-paniculata_contig21144:764..1087+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTGCTGGCAATCCCTGGATCGAACCGCCGTGGGACGTTATTCGCGGTGG
CTGGAAGATCATCATCAACTACTACGACGATGTTAGACGCTCAGGATCAA
CTACCGTTCACAGATTCAAGGTGGTGTTTCTCGGTGCCGTATTGGCTGGG
AAAACAAGTCTGGCAAAAGGACTTGAGCAGGGAAAGCCGGCTCTTACGCT
GGATGAGGAGCGTACTCGGGGCGTGGATGTGCACATTCAGCCGTGGCGAC
CTGATCCTAATCAGCCGCTGGAGGTCATAATATGGGACTTCGCTGGGCAC
GCGGATTACTACTCAACACATCAGCTTGCTGGCAATCCCTGGATCGAACC
GCCGTGGGACGTTATTCGCGGTGGCTGGAAGATCATCATCAACTACTACG
ACGATGTTAGACGCTCAGGATCAACTACCGTTCACAGATTCAAGGTGGTG
TTTCTCGGTGCCGTATTGGCTGGGAAAACAAGTCTGGCAAAAGGACTTGA
GCAGGGAAAGCCGGCTCTTACGCTGGATGAGGAGCGTACTCGGGGCGTGG
ATGTGCACATTCAGCCGTGGCGACCTGATCCTAATCAGCCGCTGGAGGTC
ATAATATGGGACTTCGCTGGGCACGCGGATTACTACTCAACACATCAG
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