mRNA_H-paniculata_contig210.5481.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig210.5481.1 vs. uniprot
Match: A0A6H5L5T5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5T5_9PHAE) HSP 1 Score: 161 bits (407), Expect = 5.980e-36 Identity = 165/501 (32.93%), Postives = 200/501 (39.92%), Query Frame = 3
Query: 2562 WTAGDVVVLRARVGKGTNKRGGVAQVVSVFDNGDYNVKLLIGHSRVQCVSPDLLSPYIIDDEQRISXXXXXXXXXXXXXXXTRGVRSCRSPTSAATSASGRRGDGANTTRRPDPSTGWLTPSPXXXXXXXXXXXXXAVSSSAVDFVPPRVHGRRVSSSELIYEGSXXXXXXXXXXTEEGLRPGVHL----------------------------------------GDRARVLYDDIDWWMGTVVAVDDASGSNGGGSAVEVAFTVRYDDGTSEEVKLCTGEVEVCADDDLEPVTQQVPAIPSSSRCVGGGVSKQCRPSSKNGSNSNNKNVQRAVGPQRCVLRKHEAKILTEHRARALLDTVPEKLVGLTYQELHRAHGGWWETKVTEI----LYDKGGVGVATVGVTGXXXXXXXXXXXXXXXXSQADTDMDPRWPSTIVVEQKDPKGESTGT---------------------FSTRRKVRVLLQKLKAWDKQRLEMWQ 3869
W+ GD+VVL+AR KG NK GGVA+V+ VF++G Y VKL +G + V DLL Y E RG R ++AS RR R DPS GW+ SP + S GR VS XXXXXXXXXX LR GV GDRARVLYD+ DW+M TVV V S + TVR+DDG+ V L G+ E+CADD L P + P + GS K V RA+G VL + E K LTE RA+ALLDT P+KLVGL YQE HR +GGWWET VTE+ + D GG G D + WP ++VV Q D GE F RK R LL +L+ WDK R W+
Sbjct: 583 WSKGDLVVLKARTSKGMNKLGGVARVLEVFEDGTYFVKLSLGGKPTR-VGSDLLFSYTPSPEPAF-----------------RGRRR--------STASRRRDTAEGGPREVDPSNGWVPSSPSSCSSSPSPKRTRSKDGS----------GRSVSXXXXXXXXXXXXXXXXXXXRRSLLRRGVKKNSGDGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARPGDRARVLYDNTDWYMATVVGVHRGS-----------SVTVRFDDGSKARVTLSPGDAEICADDALAPAASE-PXXXXXXXXXXXXXXXXXXXXXRPGSGVAVKGV-RALGAGGRVLGEGEGKALTEERAKALLDTAPQKLVGLVYQEHHRGYGGWWETVVTEVSEERMGDSGGAG------------------------RDKDGGGNAMWPESVVVGQMDRSGEKVKAKAGSAXXXXXXXXXXXXXEPDFVYTRKTRSLLSRLRTWDKHREAEWE 1010
BLAST of mRNA_H-paniculata_contig210.5481.1 vs. uniprot
Match: D8LSY7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSY7_ECTSI) HSP 1 Score: 152 bits (383), Expect = 5.850e-33 Identity = 166/510 (32.55%), Postives = 203/510 (39.80%), Query Frame = 3
Query: 2562 WTAGDVVVLRARVGKGTNKRGGVAQVVSVFDNGDYNVKLLIGHSRVQCVSPDLLSPYIIDDEQRISXXXXXXXXXXXXXXXTRGVRSCRSPTSAATSASGRRGDGANTTRRPDPSTGWLTPSPXXXXXXXXXXXXXAVSSSAVDFVPPRVHGRRVSSS------------------------------------------------ELIYEGSXXXXXXXXXXTEEGLRPGVHLGDRARVLYDDIDWWMGTVVAVDDASGSNGGGSAVEVAFTVRYDDGTSEEVKLCTGEVEVCADDDLEPVTQQVPAIPSSSRCVGGGVSKQCRPSSKNGSNSNNKNVQRAVGPQRCVLRKHEAKILTEHRARALLDTVPEKLVGLTYQELHRAHGGWWETKVTEI----LYDKGGVGVATVGVTGXXXXXXXXXXXXXXXXSQADTDMDPRWPSTIVVEQKDPKGESTGT----------------------FSTRRKVRVLLQKLKAWDKQRLEMWQ 3869
W+ GD+VVL+AR KG NK GGVA+V+ VF++G Y VKL +G + V DLL Y E RG R C + T G G+ DP G + SP XXXXX + S PR G VSSS XXXXXX T+ RPG DRARVLYD+ DW+M TVV V S + TVR+DDG+ + L G+ E+CADD L P + PA R + G K V RA+G +L + E K LTE RA+ALLDT PEKLVGL YQE HR +GGWWET VTE+ + D GG G D + WP ++VV Q D GE T F RK R LL +L+ WDK R W+
Sbjct: 547 WSKGDLVVLKARTSKGMNKLGGVARVLEVFEDGTYFVKLSLGGKPTR-VGSDLLFSYTPSPEPAF-----------------RGRRKCTASRRRDTPEGGGGGER-------DPHNGGVPSSPSACSSPPSXXXXXKRTKSK----NPR--GPSVSSSGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAAMTKAAARPG----DRARVLYDNTDWYMATVVGVHRGS-----------SVTVRFDDGSEARLALSPGDAEICADDALAPAASEPPAXXXXXXXXXXXXXXXXR--RRPGRGVVAKGV-RALGAGGRILGEGEGKALTEERAKALLDTAPEKLVGLVYQEHHRGYGGWWETVVTEVSEERMGDSGGAG------------------------RDRDGRGNAMWPESVVVGQIDRSGEKVKTKAGSXXXXXXXXXXXXXXXEPDFVYTRKTRWLLSRLRMWDKHREAEWE 983
BLAST of mRNA_H-paniculata_contig210.5481.1 vs. uniprot
Match: A0A6H5LPM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LPM1_9PHAE) HSP 1 Score: 118 bits (296), Expect = 1.670e-25 Identity = 99/285 (34.74%), Postives = 131/285 (45.96%), Query Frame = 3
Query: 4680 LTGAVEAHPHCWQPLNWGRFEGSLQTLTTESAVEVINAHAAAVSITLDCVEMYRRGVVAKTTLEAGSAKANNNSETFVAXXXXXXXXXXXXXXXXXXVLSASMIAPLFIGAGGSNKDGREAVKKCARWAARAWVRRAGGPSSTPLSH-------VETKACLLLARALGESLEAFTLAAVASSGSCSTNSVDTEGCNLVAVELESHGGELTPAVAGGKQRAXXXXXXXXXXXARSRCGLLRTLGGRPFCPRLAGMLLERLPPLQSGGGKELATGMKELRALLGRQA 5513
+T ++EA P CWQPLNW RF+ +LQ L + A AA + I LD +E +RR XXXXX PL +GAGG ++DGR A+K+CA+WAAR W R G ++ V T+ C+ +RAL E+LEAF +AA + EGC L AV LES GGK+ A R GL+R+L GR FC LA +LLE +P Q +++L+ALL RQA
Sbjct: 1 MTSSLEAFPRCWQPLNWSRFDEALQDLVVGKDPLELGARAAYLGIVLDSLETFRR------------------------------QRQGAVGXXXXXXXXXXXXXPLLLGAGG-DRDGRTALKQCAKWAARVWAHRHAGVAAGAAGGRKYDEEIVNTRVCMTASRALAEALEAFRMAAG-----------ELEGCRLAAVILESESESN-----GGKEAA------------RGLAGLMRSLSGRTFCSALARVLLENMPE-QXXXXXXXVVEVEKLKALLRRQA 225 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig210.5481.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig210.5481.1 >prot_H-paniculata_contig210.5481.1 ID=prot_H-paniculata_contig210.5481.1|Name=mRNA_H-paniculata_contig210.5481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=1836bp MKRKSRQAGGISPDIWTFFSTSSLPFAGANKLKTITGCAVASTPSTACRTback to top mRNA from alignment at H-paniculata_contig210:18665..30086+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig210.5481.1 ID=mRNA_H-paniculata_contig210.5481.1|Name=mRNA_H-paniculata_contig210.5481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11422bp|location=Sequence derived from alignment at H-paniculata_contig210:18665..30086+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig210:18665..30086+ >mRNA_H-paniculata_contig210.5481.1 ID=mRNA_H-paniculata_contig210.5481.1|Name=mRNA_H-paniculata_contig210.5481.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=11016bp|location=Sequence derived from alignment at H-paniculata_contig210:18665..30086+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |