mRNA_H-paniculata_contig20999.5475.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20999.5475.1
Unique NamemRNA_H-paniculata_contig20999.5475.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20999.5475.1 vs. uniprot
Match: D8LS73_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS73_ECTSI)

HSP 1 Score: 77.8 bits (190), Expect = 9.660e-16
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 VWDVTTQQCSATLTHHQDKVQGVAWHPVEATVIATMG 111
            VWDVTTQQCSATLTHH DKVQGVAWHPVEATV+AT+G
Sbjct:  185 VWDVTTQQCSATLTHHSDKVQGVAWHPVEATVMATVG 221
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BLAST of mRNA_H-paniculata_contig20999.5475.1 vs. uniprot
Match: A0A6H5JP62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP62_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 1.010e-15
Identity = 34/37 (91.89%), Postives = 36/37 (97.30%), Query Frame = 1 
Query:    1 VWDVTTQQCSATLTHHQDKVQGVAWHPVEATVIATMG 111
            VWDVTTQQCSATLTHH DKVQGVAWHPVEATV+AT+G
Sbjct:  318 VWDVTTQQCSATLTHHSDKVQGVAWHPVEATVMATVG 354
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BLAST of mRNA_H-paniculata_contig20999.5475.1 vs. uniprot
Match: U6KXP6_EIMTE (AT4g18900/F13C5_70, related n=1 Tax=Eimeria tenella TaxID=5802 RepID=U6KXP6_EIMTE)

HSP 1 Score: 51.2 bits (121), Expect = 2.320e-6
Identity = 19/35 (54.29%), Postives = 27/35 (77.14%), Query Frame = 1 
Query:    1 VWDVTTQQCSATLTHHQDKVQGVAWHPVEATVIAT 105
            +WD+TT  C +T  HH +KVQ +AWHP EA+++AT
Sbjct:  290 LWDLTTGSCLSTYKHHSNKVQAIAWHPSEASLLAT 324
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BLAST of mRNA_H-paniculata_contig20999.5475.1 vs. uniprot
Match: A0A0G4IUY3_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IUY3_PLABS)

HSP 1 Score: 50.8 bits (120), Expect = 3.180e-6
Identity = 18/33 (54.55%), Postives = 28/33 (84.85%), Query Frame = 1 
Query:    1 VWDVTTQQCSATLTHHQDKVQGVAWHPVEATVI 99
            +WD+ TQ+C++TL+HH+DKVQ V+W+P E  V+
Sbjct:  260 LWDLPTQRCTSTLSHHKDKVQSVSWNPTEPVVL 292
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BLAST of mRNA_H-paniculata_contig20999.5475.1 vs. uniprot
Match: UPI001E8E0F19 (putative rRNA processing protein Pwp1 n=1 Tax=Talaromyces proteolyticus TaxID=1131652 RepID=UPI001E8E0F19)

HSP 1 Score: 48.1 bits (113), Expect = 2.850e-5
Identity = 17/33 (51.52%), Postives = 27/33 (81.82%), Query Frame = 1 
Query:    1 VWDVTTQQCSATLTHHQDKVQGVAWHPVEATVI 99
            +WD++TQ+C+ + THH+DKV  + WHP E+TV+
Sbjct:  292 LWDLSTQKCAKSYTHHKDKVCALDWHPKESTVL 324
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BLAST of mRNA_H-paniculata_contig20999.5475.1 vs. uniprot
Match: B5YM77_THAPS (Predicted protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B5YM77_THAPS)

HSP 1 Score: 48.1 bits (113), Expect = 2.860e-5
Identity = 24/46 (52.17%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:    1 VWDVTTQ---------QCSATLTHHQDKVQGVAWHPVEATVIATMG 111
            +WDVT           + SATLTHH DKVQ +AWHP E T++AT G
Sbjct:  178 LWDVTHTTRGKGGDYVRPSATLTHHSDKVQSLAWHPSEGTLLATGG 223
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BLAST of mRNA_H-paniculata_contig20999.5475.1 vs. uniprot
Match: A0A7S2KJ73_9STRA (Hypothetical protein (Fragment) n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KJ73_9STRA)

HSP 1 Score: 47.0 bits (110), Expect = 4.360e-5
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   28 SATLTHHQDKVQGVAWHPVEATVIATMG 111
            SATLTHH DKVQ +AWHP E T++AT G
Sbjct:   22 SATLTHHTDKVQSLAWHPSEGTLLATGG 49
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BLAST of mRNA_H-paniculata_contig20999.5475.1 vs. uniprot
Match: A0A0U1LTC1_TALIS (Putative WD repeat-containing protein C17D11,16 n=2 Tax=Talaromyces sect. Islandici TaxID=2752542 RepID=A0A0U1LTC1_TALIS)

HSP 1 Score: 47.4 bits (111), Expect = 5.330e-5
Identity = 17/33 (51.52%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:    1 VWDVTTQQCSATLTHHQDKVQGVAWHPVEATVI 99
            +WD++TQ+C+ + THH DKV  + WHP E+TV+
Sbjct:  300 LWDLSTQKCAKSYTHHTDKVCALDWHPKESTVL 332
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20999.5475.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D8LS73_ECTSI9.660e-1691.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JP62_9PHAE1.010e-1591.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
U6KXP6_EIMTE2.320e-654.29AT4g18900/F13C5_70, related n=1 Tax=Eimeria tenell... [more]
A0A0G4IUY3_PLABS3.180e-654.55Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
UPI001E8E0F192.850e-551.52putative rRNA processing protein Pwp1 n=1 Tax=Tala... [more]
B5YM77_THAPS2.860e-552.17Predicted protein (Fragment) n=1 Tax=Thalassiosira... [more]
A0A7S2KJ73_9STRA4.360e-571.43Hypothetical protein (Fragment) n=1 Tax=Skeletonem... [more]
A0A0U1LTC1_TALIS5.330e-551.52Putative WD repeat-containing protein C17D11,16 n=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20999contigH-paniculata_contig20999:3948..4061 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue7.1e-13
Seed eggNOG ortholog2880.D8LS73
Preferred namePWP1
KEGG koko:K14791
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0001932,GO:0001933,GO:0002064,GO:0002065,GO:0002066,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005794,GO:0006139,GO:0006325,GO:0006351,GO:0006355,GO:0006356,GO:0006359,GO:0006364,GO:0006396,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007293,GO:0007548,GO:0008150,GO:0008152,GO:0008213,GO:0008406,GO:0008584,GO:0009058,GO:0009059,GO:0009653,GO:0009719,GO:0009725,GO:0009888,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010604,GO:0010605,GO:0010628,GO:0010646,GO:0012505,GO:0016043,GO:0016070,GO:0016072,GO:0016569,GO:0016570,GO:0016571,GO:0018022,GO:0018023,GO:0018130,GO:0018193,GO:0018205,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019538,GO:0019827,GO:0019953,GO:0022412,GO:0022414,GO:0022613,GO:0023051,GO:0030154,GO:0030707,GO:0030718,GO:0030723,GO:0030855,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031490,GO:0031974,GO:0031981,GO:0032259,GO:0032268,GO:0032269,GO:0032501,GO:0032502,GO:0032504,GO:0032774,GO:0032868,GO:0032869,GO:0032870,GO:0033135,GO:0033137,GO:0033139,GO:0033140,GO:0034470,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0034770,GO:0034773,GO:0034968,GO:0035064,GO:0036098,GO:0036211,GO:0042221,GO:0042254,GO:0042325,GO:0042326,GO:0042393,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043434,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045478,GO:0045595,GO:0045597,GO:0045893,GO:0045935,GO:0045936,GO:0045943,GO:0045945,GO:0046425,GO:0046483,GO:0046546,GO:0046661,GO:0048468,GO:0048477,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048608,GO:0048609,GO:0048646,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051094,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051276,GO:0051704,GO:0051716,GO:0060255,GO:0060429,GO:0061458,GO:0065007,GO:0070013,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071704,GO:0071840,GO:0080090,GO:0090069,GO:0090070,GO:0090304,GO:0097159,GO:0097659,GO:0098727,GO:0140030,GO:0140034,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1901836,GO:1901838,GO:1902531,GO:1902680,GO:1903506,GO:1903508,GO:1904892,GO:1990889,GO:2000112,GO:2000736,GO:2000738,GO:2001141
EggNOG free text desc.H4K20me3 modified histone binding
EggNOG OGsKOG0270@1,KOG0270@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03009
Exons1
Model size114
Cds size114
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929553.6396227-CDS-H-paniculata_contig20999:3947..40611622929553.6396227-CDS-H-paniculata_contig20999:3947..4061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20999 3948..4061 -
1691480910.9377038-CDS-H-paniculata_contig20999:3947..40611691480910.9377038-CDS-H-paniculata_contig20999:3947..4061Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20999 3948..4061 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20999.5475.1prot_H-paniculata_contig20999.5475.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20999 3948..4061 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20999.5475.1

>prot_H-paniculata_contig20999.5475.1 ID=prot_H-paniculata_contig20999.5475.1|Name=mRNA_H-paniculata_contig20999.5475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=38bp
VWDVTTQQCSATLTHHQDKVQGVAWHPVEATVIATMG*
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mRNA from alignment at H-paniculata_contig20999:3948..4061-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20999.5475.1 ID=mRNA_H-paniculata_contig20999.5475.1|Name=mRNA_H-paniculata_contig20999.5475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=114bp|location=Sequence derived from alignment at H-paniculata_contig20999:3948..4061- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTGGGATGTGACCACGCAGCAGTGCTCGGCAACGCTCACACACCACCA
AGACAAAGTGCAGGGGGTGGCTTGGCACCCCGTTGAGGCTACGGTGATCG
CCACCATGGGGTGA
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Coding sequence (CDS) from alignment at H-paniculata_contig20999:3948..4061-

>mRNA_H-paniculata_contig20999.5475.1 ID=mRNA_H-paniculata_contig20999.5475.1|Name=mRNA_H-paniculata_contig20999.5475.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=228bp|location=Sequence derived from alignment at H-paniculata_contig20999:3948..4061- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTTTGGGATGTGACCACGCAGCAGTGCTCGGCAACGCTCACACACCACCA
AGACAAAGTGCAGGGGGTGGCTTGGCACCCCGTTGAGGCTACGGTGATCG
CCACCATGGGGTGAGTTTGGGATGTGACCACGCAGCAGTGCTCGGCAACG
CTCACACACCACCAAGACAAAGTGCAGGGGGTGGCTTGGCACCCCGTTGA
GGCTACGGTGATCGCCACCATGGGGTGA
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