mRNA_H-paniculata_contig20846.5420.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig20846.5420.1
Unique NamemRNA_H-paniculata_contig20846.5420.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig20846.5420.1 vs. uniprot
Match: D7FNW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNW6_ECTSI)

HSP 1 Score: 133 bits (334), Expect = 1.540e-38
Identity = 62/82 (75.61%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:   22 AELRSLHPILARADIMSRDNTSSFGALGMLMIKGVLAYVLVRLGRSQEGLQVLEPVAGLLSENPGLLRQVMCWHLSHCVLVS 267
            AEL SL PIL RAD MSRDN+SSFGALG++++KGVLAY+L+RLGRSQ+GL+VLEPV G+L+ENPGLLRQVMCWHLS C+L++
Sbjct:    2 AELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILLA 83
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BLAST of mRNA_H-paniculata_contig20846.5420.1 vs. uniprot
Match: D8LD81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD81_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 5.670e-37
Identity = 67/88 (76.14%), Postives = 79/88 (89.77%), Query Frame = 1 
Query:    1 IYSVQVTAELRSLHPILARADIMSRDNTSSFGALGMLMIKGVLAYVLVRLGRSQEGLQVLEPVAGLLSENPGLLRQVMCWHLSHCVLV 264
            I   QV AEL SL PIL RAD MSRDN+SSFGALG++++KGVLAY+L+RLGRSQ+GL+VLEPV G+L+ENPGLLRQVMCWHLSHC+LV
Sbjct:  297 ISKAQVMAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSHCILV 384
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BLAST of mRNA_H-paniculata_contig20846.5420.1 vs. uniprot
Match: A0A6H5K8W2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8W2_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 1.260e-36
Identity = 64/83 (77.11%), Postives = 77/83 (92.77%), Query Frame = 1 
Query:   16 VTAELRSLHPILARADIMSRDNTSSFGALGMLMIKGVLAYVLVRLGRSQEGLQVLEPVAGLLSENPGLLRQVMCWHLSHCVLV 264
            V AEL SL PIL RAD MS+DN+SSFGALG++++KGVLAY+L+RLGRSQ+GL+VLEPV G+L+ENPGLLRQVMCWHLSHC+LV
Sbjct:  215 VMAELNSLLPILTRADGMSQDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSHCILV 297
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BLAST of mRNA_H-paniculata_contig20846.5420.1 vs. uniprot
Match: A0A6H5K9S8_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9S8_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 3.890e-36
Identity = 63/84 (75.00%), Postives = 77/84 (91.67%), Query Frame = 1 
Query:   16 VTAELRSLHPILARADIMSRDNTSSFGALGMLMIKGVLAYVLVRLGRSQEGLQVLEPVAGLLSENPGLLRQVMCWHLSHCVLVS 267
            V AEL SL PIL RAD MSRDN+SSFG LG++++KGVLAY+L+RLGRSQ+GL+VLEPV G+L+ENPGLLRQVMCWHLSHC+L++
Sbjct:  341 VMAELNSLLPILTRADGMSRDNSSSFGTLGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSHCILLA 424
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BLAST of mRNA_H-paniculata_contig20846.5420.1 vs. uniprot
Match: D8LD86_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD86_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 7.820e-36
Identity = 66/88 (75.00%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:    1 IYSVQVTAELRSLHPILARADIMSRDNTSSFGALGMLMIKGVLAYVLVRLGRSQEGLQVLEPVAGLLSENPGLLRQVMCWHLSHCVLV 264
            I   QV AEL SL PIL RAD MSRDN+SSFGALG++++KGVLAY+L+RLGRSQ+GL+VLEPV G+L+ENPGLLRQVMCWHLS C+LV
Sbjct:  299 ISKAQVMAELNSLLPILTRADGMSRDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEVLEPVVGILAENPGLLRQVMCWHLSRCILV 386
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BLAST of mRNA_H-paniculata_contig20846.5420.1 vs. uniprot
Match: A0A6H5JWQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWQ9_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 4.680e-28
Identity = 57/90 (63.33%), Postives = 68/90 (75.56%), Query Frame = 1 
Query:   22 AELRSLHPILARADIMSRDNTSSFGALGMLMIKGVLAYVLVRLGRS-------QEGLQ---VLEPVAGLLSENPGLLRQVMCWHLSHCVL 261
            AEL SL PIL RAD  SRDN+SSFGALG++++ GVLA +L+RLG S       + GL    VLEPV G+L+E PGLLRQVMCWHLSHC+L
Sbjct:    2 AELNSLLPILTRADGRSRDNSSSFGALGVVLVNGVLASILLRLGLSVSTTSWMRNGLGNVWVLEPVVGILAETPGLLRQVMCWHLSHCIL 91
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BLAST of mRNA_H-paniculata_contig20846.5420.1 vs. uniprot
Match: A0A835Z8X2_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8X2_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.180e-19
Identity = 43/80 (53.75%), Postives = 56/80 (70.00%), Query Frame = 1 
Query:   25 ELRSLHPILARADIMSRDNTSSFGALGMLMIKGVLAYVLVRLGRSQEGLQVLEPVAGLLSENPGLLRQVMCWHLSHCVLV 264
            EL +L P+L  AD +     +SFGALG +++K  LAYVL+RLGR+ E L+ LEPV  LLS +PGL+RQ   WHL HC +V
Sbjct:    3 ELSALVPLLLDADDLCARAAASFGALGTVLVKCALAYVLLRLGRTAECLRALEPVVPLLSLHPGLVRQSAVWHLVHCAMV 82
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BLAST of mRNA_H-paniculata_contig20846.5420.1 vs. uniprot
Match: A0A6H5JUV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUV1_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.830e-16
Identity = 39/54 (72.22%), Postives = 49/54 (90.74%), Query Frame = 1 
Query:   16 VTAELRSLHPILARADIMSRDNTSSFGALGMLMIKGVLAYVLVRLGRSQEGLQV 177
            V AEL SL PIL RAD MS+DN+SSFGALG++++KGVLAY+L+RLGRSQ+GL+V
Sbjct:   90 VMAELNSLLPILTRADGMSQDNSSSFGALGVVLVKGVLAYILLRLGRSQDGLEV 143
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig20846.5420.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FNW6_ECTSI1.540e-3875.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LD81_ECTSI5.670e-3776.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K8W2_9PHAE1.260e-3677.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K9S8_9PHAE3.890e-3675.00Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LD86_ECTSI7.820e-3675.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWQ9_9PHAE4.680e-2863.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8X2_9STRA2.180e-1953.75Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A6H5JUV1_9PHAE1.830e-1672.22Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig20846contigH-paniculata_contig20846:792..3292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_003040.1
Exons2
Model size276
Cds size276
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929545.9626553-CDS-H-paniculata_contig20846:791..9651622929545.9626553-CDS-H-paniculata_contig20846:791..965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20846 792..965 +
1691480907.8387375-CDS-H-paniculata_contig20846:791..9651691480907.8387375-CDS-H-paniculata_contig20846:791..965Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20846 792..965 +
1622929545.9792204-CDS-H-paniculata_contig20846:3190..32921622929545.9792204-CDS-H-paniculata_contig20846:3190..3292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20846 3191..3292 +
1691480907.849195-CDS-H-paniculata_contig20846:3190..32921691480907.849195-CDS-H-paniculata_contig20846:3190..3292Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig20846 3191..3292 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig20846.5420.1prot_H-paniculata_contig20846.5420.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig20846 792..3292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig20846.5420.1

>prot_H-paniculata_contig20846.5420.1 ID=prot_H-paniculata_contig20846.5420.1|Name=mRNA_H-paniculata_contig20846.5420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=92bp
IYSVQVTAELRSLHPILARADIMSRDNTSSFGALGMLMIKGVLAYVLVRL
GRSQEGLQVLEPVAGLLSENPGLLRQVMCWHLSHCVLVSEQ*
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mRNA from alignment at H-paniculata_contig20846:792..3292+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig20846.5420.1 ID=mRNA_H-paniculata_contig20846.5420.1|Name=mRNA_H-paniculata_contig20846.5420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2501bp|location=Sequence derived from alignment at H-paniculata_contig20846:792..3292+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATATTCCGTGCAGGTTACGGCAGAGTTGCGTTCCTTGCACCCCATACT
CGCTCGAGCGGACATTATGAGTCGCGACAACACGTCGTCCTTCGGCGCGC
TAGGAATGCTGATGATCAAGGGAGTGCTGGCTTACGTCTTGGTTCGTCTG
GGACGGAGTCAAGAAGGGCTTCAGGTGTGATATTGTTTTTCCTCTGTTCA
TTTTTTTTTTTTTTTTTTTTCGTATTCAATACCTTTAGAAACATGTACGC
AGATGTCGTTGCCATTATCCTTATATTTATGAATGGATATGGTCCATCAG
ATGCAAGGTGATGATTTTTTTTTGGGAAAGTTGTTTAAGTCTGTAGTCAA
GTAACTCCTGACAAAGGAATCGGCATGTAATATTCATTTTGGAACAATTG
TTCAACTCTGTAGTCAAGTAACTCCTGACAAAGGAATCTGCATGTGGTCT
TTATTTCGGGACAATTGTTTAACTCTGTAGTCAAGTAACTCTTGACAGAG
GAATCTGCATGTGGTCTTCACTTCGGGACAATTGTTTAACTCTGTAGTCA
AGTAACTCCTGACAAAGGAATCGGCATGTAATATTTGTTTTGGAACAATT
GTTCAACTCTGTAGTCAAGTAACTCCTGACAGAGGAATCTGCATGTGCAG
TCAGTGGATTGAGAATAAGAGCACAAACTGCACTTGCGTAGCCGGGGTTC
TACTATCGTGAGTTTTCACTTTATTGCTACTATTGTCATGATTATTGTCA
GTATTATCATGATTATTATCAGTATTACCATGATTATTATCAGTGTTATC
ATTTTATTGCTGTTATTGGCGAAGAGAGGGTGTGTGTTCTACAGACACTA
GTGTAATTATTTCTCCCGCTATACTGCATATAATAGCAACAACTGTAACA
CGCGAGGTCTTTTTTTCTGTGCTTAGCTAAAACAAGAAGCGCAGTGCAAA
AGCCTGAGCGTGTTTCTGCTTTTCTTGTTTCTTGAGTTTTCTGTGACGTA
ACCCCAGGAAATGTTTGGGATTAAATACTGGTGGGCAGGTCGGTGACATG
GGATGGATCCCTGCCTCGACCCTTATACCTTCAGAGCCTATCCAATAACC
CCCTATATTCATCTCATATAATAGTCAGACAAGGAAAAACAATGTGGTTA
TGGTGTATGACGTGATCACGGGGATATAAGGAGCAGTCGCTGTTGAGATA
AATGAAGCAGTACAGGCAGTACATACAGATATTAATAGCACAGGCGAGAA
GATAACATGGTCTTCACGGATCTACGCCCGAACGGGTAGGGTAGCTCGTG
AATTGATCATGACAGGAAGTCTAGTCAGAGGTCTTTTAGTGGGTGCAGCC
CCCACACTGCCTACCTGGTTCGGCCGGACCGGGGTGGCACCAACCCCGCA
GAGGAATAAATAACTATGTTCTGTTGAAGAAAATGTAGAAATACTTGGAT
AAAATACTTCAAGTATGGAAGCATCGGTAAAGGTTTTTGCATTAGCCTTC
CGGGGGTTTAAAAGACACACAAAAAACATGGTCCTATCCACTTGAGGACT
GCAGCGCTCGACATATTTATCAGAGACCCGTAATTCTCAGCTTTGAAGTG
TCATAGCCCAAATACCTTGTGAAGCTCCCCCACGGGGACGGCGGGGTGGG
CAAATTGATTTGTATCTCCTTTTTTAAACTACAGACCTCATCACGCGTAC
AAAATTGTTGCTCATCTACATAAATCCATTTATGGTATTTGTAGTTACCA
ATCGTCGCTGCCCGCTGCAGGATGCTGGTAAATGCTTAATTTCGGGCCAT
GTGACAAATCTAGCTTTTGCCTACGGTGGGCCTGTGCGTGAGCCTCTGAG
CCCATACTGTCGAAACAGTGAAAATATATATATATATATTTATATAATGT
TATGAGATGTTGATTGCGGGACGTGACAGTCATTGTCTAATGTGACGGTT
CCATCCGCAATCCCCGGGTTCACGTAAGGCAGCCTCAGTTTGAGCTGGGA
GCAGGAAGCACGGACCGTGTGATCATCCCAACTGACACACTTGTATCGAC
CCAGGGTTGTTCCTGACGTACAGCAATATACAGCTAATACAAGAGACCAG
ACCATTGCCAAGGACTACTTCTGCCACCCCAGCCGAACCGCTCTGAGATT
ATTGTACAGCATAGTTAGTAACAGGAAACAATAACCTACGTGTGTGAGAT
ACTCCGCTATGCGAACAGCAGATATCATCACATGAAGAAAATATGCGGGT
TGTGTGTGTGTGTATGTGTGGGAGATGACTCAAAAAGAAGATGGAGAATT
GGAAAATGTTTCTAGAGGACAATTACTGTTCACCTTATTATCATCATGGT
GGTAAGGGTATCTATGACGTTTCCTCTCCTCGTGTGTTGTGTGTGCCAGG
TGTTGGAGCCAGTGGCGGGGCTATTGAGCGAGAATCCAGGGCTGCTTCGG
CAGGTCATGTGCTGGCATTTGTCACACTGCGTCCTGGTGAGTGAGCAGTA
A
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Coding sequence (CDS) from alignment at H-paniculata_contig20846:792..3292+

>mRNA_H-paniculata_contig20846.5420.1 ID=mRNA_H-paniculata_contig20846.5420.1|Name=mRNA_H-paniculata_contig20846.5420.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=552bp|location=Sequence derived from alignment at H-paniculata_contig20846:792..3292+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATATATTCCGTGCAGGTTACGGCAGAGTTGCGTTCCTTGCACCCCATACT
CGCTCGAGCGGACATTATGAGTCGCGACAACACGTCGTCCTTCGGCGCGC
TAGGAATGCTGATGATCAAGGGAGTGCTGGCTTACGTCTTGGTTCGTCTG
GGACGGAGTCAAGAAGGGCTTCAGATATATTCCGTGCAGGTTACGGCAGA
GTTGCGTTCCTTGCACCCCATACTCGCTCGAGCGGACATTATGAGTCGCG
ACAACACGTCGTCCTTCGGCGCGCTAGGAATGCTGATGATCAAGGGAGTG
CTGGCTTACGTCTTGGTTCGTCTGGGACGGAGTCAAGAAGGGCTTCAGGT
GTTGGAGCCAGTGGCGGGGCTATTGAGCGAGAATCCAGGGCTGCTTCGGC
AGGTCATGTGCTGGCATTTGTCACACTGCGTCCTGGTGAGTGAGCAGTAA
GTGTTGGAGCCAGTGGCGGGGCTATTGAGCGAGAATCCAGGGCTGCTTCG
GCAGGTCATGTGCTGGCATTTGTCACACTGCGTCCTGGTGAGTGAGCAGT
AA
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