mRNA_H-paniculata_contig204.5285.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig204.5285.1 vs. uniprot
Match: A0A6H5KXZ9_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KXZ9_9PHAE) HSP 1 Score: 97.8 bits (242), Expect = 2.790e-17 Identity = 92/265 (34.72%), Postives = 134/265 (50.57%), Query Frame = 3
Query: 1608 LSKVEQRELETRQEANRLASSAEEVVRKLERTESELFEAKVPRKVSIKAIMADVNHLANELVAQTAVARDDVIAAAAKEAQKAHAITLPYWEQGVEAAAXXXXXXXXXXXXXXXXXXEVLTVCRGKFDESVGVAAGEQWLVVRKVCSENLDKAMATWENWEVAVVKQLISSGLPEEEAQRTMKYLNLFALANVGLLFLVYLSGSVLSYVIVPTVRRALGLVIWVVKVPFRILFLPFRLXXXXXXXMYRLIFGGKPAAPGKKPRAS 2402
L++ E +E + R+E +R A+E+ KLERT SEL A+ PR VS+ AI ADV L N LV Q+ ARDD++ A+++ + A + P++E VEA+ XXXXXXXXXXXXXX + +V L+ G+P++EA++T +Y+N LA V + +VY GS + Y I P +R L L +WV+ +P RIL +RL+FGG+ A P A+
Sbjct: 211 LTRAEAKESKAREEHDR---HAQEMRGKLERTASELELARKPRVVSMTAICADVKELGNNLVEQSKDARDDIVKRASEKLEMARVVVHPHYESAVEASKPVVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTKSDESAAWIVSVLVRWGMPDQEAEKTCRYVNNLLLAMVVVALVVYFGGSTVKYFIWPVLRTVLRLALWVLVLPLRILXXXXXXVLWVLLKCFRLVFGGRGAGNAAPPAAA 472 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig204.5285.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig204.5285.1 >prot_H-paniculata_contig204.5285.1 ID=prot_H-paniculata_contig204.5285.1|Name=mRNA_H-paniculata_contig204.5285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=793bp MTFYASRSRHATARLTRCALLSVLLLAFLLGLSQLRVCQADDTASVAAVEback to top mRNA from alignment at H-paniculata_contig204:17836..37287+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig204.5285.1 ID=mRNA_H-paniculata_contig204.5285.1|Name=mRNA_H-paniculata_contig204.5285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=19452bp|location=Sequence derived from alignment at H-paniculata_contig204:17836..37287+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig204:17836..37287+ >mRNA_H-paniculata_contig204.5285.1 ID=mRNA_H-paniculata_contig204.5285.1|Name=mRNA_H-paniculata_contig204.5285.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=4758bp|location=Sequence derived from alignment at H-paniculata_contig204:17836..37287+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |