|
|
Homology
BLAST of mRNA_H-paniculata_contig18767.4660.1 vs. uniprot
Match: D8LFW3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFW3_ECTSI) HSP 1 Score: 75.9 bits (185), Expect = 4.780e-11 Identity = 45/95 (47.37%), Postives = 54/95 (56.84%), Query Frame = 2
Query: 65 DVDTLGNVAALVGGNQHLFFASVCRSWRVAWRQRHRST--LTAIVRPDSSVSQLLYSFECGARTTAGVCEAAARAGNLQVLQCARRIGCPWHTKT 343
+VD + +A V QHLFFA V WR AW +R ST +T V P SQL +SF CG R A VCEA A G L+VL+ AR + CPW T
Sbjct: 36 NVDIVRCLADFVHDEQHLFFAGVSTLWREAWGRRPTSTRAITEHVTP----SQLCWSFSCGLRKRAEVCEAIAGFGKLEVLKRARELKCPWGRST 126
BLAST of mRNA_H-paniculata_contig18767.4660.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 5.220e-10 Identity = 42/101 (41.58%), Postives = 54/101 (53.47%), Query Frame = 2
Query: 56 FVTDVDTLGNVAALVGGNQHLFFASVCRSWRVAWRQRHRSTLTAIVRPDSSVSQLLYSFECGARTTA-GVCEAAARAGNLQVLQCARRIGCPWHTKTWGKA 355
F D + + + V +Q LFFASV R+WR AWR R T T + PD+S SQL +S +CG VC A A G L +L+ AR +G W T KA
Sbjct: 5 FQATADVISHASEFVHDDQFLFFASVSRAWRGAWRGR--PTSTRAITPDTSPSQLRHSVDCGLSPGGTAVCTAIASLGRLDLLRAARALGFRWDKMTCWKA 103
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 70.9 |
| Seed ortholog evalue | 1.3e-09 |
| Seed eggNOG ortholog | 2880.D7FJY0 |
| KEGG ko | ko:K06052 |
| KEGG Pathway | ko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224 |
| Hectar predicted targeting category | other localisation |
| EggNOG OGs | 2AMK4@1,2RZCC@2759 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko04090 |
| Exons | 1 |
| Model size | 1599 |
| Cds size | 1002 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18767.4660.1 >prot_H-paniculata_contig18767.4660.1 ID=prot_H-paniculata_contig18767.4660.1|Name=mRNA_H-paniculata_contig18767.4660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=334bp
MDCSRSLQLTLELHAFVTDVDTLGNVAALVGGNQHLFFASVCRSWRVAWR
QRHRSTLTAIVRPDSSVSQLLYSFECGARTTAGVCEAAARAGNLQVLQCA
RRIGCPWHTKTWGKAARGGHLDVLVWAQENGCPKDDDTCLEAARGGHLHI
LQWARTYGCPWARDTVVPVSVGSIEHSNNYVSHTWDTCSVSAEAGHLHIL
KWAKENGCPWDSKTCSGAATGGHLNVLQWARENGCEWDSTTCFRAAEGGF
LETLQWARLNGCPWDAMTCLGAADGGHLEILRYARENGCPLHAKTWRTAA
LQGHLHVLLWGLENSYPMGDDSSLEALMGGSVP* back to topmRNA from alignment at H-paniculata_contig18767:2656..4254+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_H-paniculata_contig18767.4660.1 ID=mRNA_H-paniculata_contig18767.4660.1|Name=mRNA_H-paniculata_contig18767.4660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1599bp|location=Sequence derived from alignment at H-paniculata_contig18767:2656..4254+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGGGGGATTTATGGACTGTTCAAGAAGTCTACAGTTAACCCTGGAGCTTC
ATGCCTTCGTCACCGACGTGGATACTCTCGGTAATGTTGCGGCATTGGTG
GGTGGGAATCAGCACTTGTTTTTCGCATCGGTTTGTAGAAGCTGGAGGGT
TGCGTGGCGGCAACGACACCGAAGCACGTTGACCGCAATCGTACGACCGG
ATTCCTCTGTATCTCAGCTCCTGTACAGCTTCGAGTGCGGCGCGAGAACA
ACTGCTGGAGTCTGCGAGGCTGCTGCACGCGCTGGCAATCTCCAGGTTCT
CCAATGTGCCCGGCGAATCGGTTGTCCATGGCACACGAAAACATGGGGAA
AGGCAGCCCGCGGAGGTCACCTGGACGTTCTTGTCTGGGCGCAAGAGAAT
GGGTGTCCGAAGGATGATGACACGTGCTTGGAGGCGGCTAGAGGAGGGCA
TCTACATATTCTTCAGTGGGCACGGACGTACGGATGTCCCTGGGCTCGGG
ACACTGTCGTACCCGTGTCTGTGGGTTCTATCGAGCACAGCAACAACTAT
GTCAGTCACACGTGGGACACCTGCAGTGTGTCTGCCGAGGCAGGGCATCT
GCATATCCTGAAATGGGCGAAAGAGAACGGATGTCCGTGGGATTCAAAAA
CTTGCTCTGGTGCCGCCACTGGAGGTCACCTGAACGTTCTACAGTGGGCG
AGAGAGAACGGCTGTGAATGGGACTCTACAACATGTTTTCGCGCCGCGGA
GGGGGGTTTTCTTGAGACTCTCCAATGGGCCCGTCTGAATGGCTGCCCTT
GGGATGCGATGACATGTCTAGGAGCTGCCGACGGAGGGCACTTGGAGATT
CTGCGGTACGCACGGGAAAACGGATGCCCATTGCACGCAAAAACCTGGCG
TACTGCGGCCCTACAAGGCCATCTACACGTCCTTCTGTGGGGTCTAGAAA
ATAGCTATCCAATGGGCGATGATAGCTCTCTGGAGGCACTAATGGGCGGA
TCCGTACCCTGAAGAGCGCAGACCCGTAGTCGGGGTGCAGTTGACGCTGT
TGCTCTTGTTCCCTACCTGCGAGAGCACTTTGTTGTACACCAGCGGGATT
GATAATCGGTAGGTTTAGTATAGGCGAATCTGAGATAAGGTGTAGCGCAA
GGGTTCATCTGATGAAGGTTAGATTGGAAAATGGAAGGAAAAAAGCTTGT
CCGTGGTGTCGGGAGGTGGACTACATAGTATGCACCCCCAATTCGAAGGA
AGCACGTGTATGAATAGGGGTATCAGCGGTTGTGAGGCGTTAGAGCAGAA
GCAGAGGCCGGCAGCACATGCATATGTACCGGAAGATTACTGCATGGCCA
ATGATAGAACTACTCGTGTTGGGTATTTTCTTTGAATGTATGCAGAGAGC
TATAAGGTAAGAGCGTTTATTTATGACGATTGGTTGACGAGGACCACGAT
GTTTTATTTAGTTTTTTCGATTGTACACGCCGAGCATCTTTCATTTTGTA
TGTTATAAAAAAAGATTGGCGGCTCCGCCGATCTCAAAAATTTTCTATAA
ACCAAAATTATAATGCCTTCACCAGAAAAATCCGAGGTTACCCGTTGAC back to topCoding sequence (CDS) from alignment at H-paniculata_contig18767:2656..4254+ >mRNA_H-paniculata_contig18767.4660.1 ID=mRNA_H-paniculata_contig18767.4660.1|Name=mRNA_H-paniculata_contig18767.4660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2004bp|location=Sequence derived from alignment at H-paniculata_contig18767:2656..4254+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGACTGTTCAAGAAGTCTACAGTTAACCCTGGAGCTTCATGCCTTCGT
CACCGACGTGGATACTCTCGGTAATGTTGCGGCATTGGTGGGTGGGAATC
AGCACTTGTTTTTCGCATCGGTTTGTAGAAGCTGGAGGGTTGCGTGGCGG
CAACGACACCGAAGCACGTTGACCGCAATCGTACGACCGGATTCCTCTGT
ATCTCAGCTCCTGTACAGCTTCGAGTGCGGCGCGAGAACAACTGCTGGAG
TCTGCGAGGCTGCTGCACGCGCTGGCAATCTCCAGGTTCTCCAATGTGCC
CGGCGAATCGGTTGTCCATGGCACACGAAAACATGGGGAAAGGCAGCCCG
CGGAGGTCACCTGGACGTTCTTGTCTGGGCGCAAGAGAATGGGTGTCCGA
AGGATGATGACACGTGCTTGGAGGCGGCTAGAGGAGGGCATCTACATATT
CTTCAGTGGGCACGGACGTACGGATGTCCCTGGGCTCGGGACACTGTCGT
ACCCGTGTCTGTGGGTTCTATCGAGCACAGCAACAACTATGTCAGTCACA
CGTGGGACACCTGCAGTGTGTCTGCCGAGGCAGGGCATCTGCATATCCTG
AAATGGGCGAAAGAGAACGGATGTCCGTGGGATTCAAAAACTTGCTCTGG
TGCCGCCACTGGAGGTCACCTGAACGTTCTACAGTGGGCGAGAGAGAACG
GCTGTGAATGGGACTCTACAACATGTTTTCGCGCCGCGGAGGGGGGTTTT
CTTGAGACTCTCCAATGGGCCCGTCTGAATGGCTGCCCTTGGGATGCGAT
GACATGTCTAGGAGCTGCCGACGGAGGGCACTTGGAGATTCTGCGGTACG
CACGGGAAAACGGATGCCCATTGCACGCAAAAACCTGGCGTACTGCGGCC
CTACAAGGCCATCTACACGTCCTTCTGTGGGGTCTAGAAAATAGCTATCC
AATGGGCGATGATAGCTCTCTGGAGGCACTAATGGGCGGATCCGTACCCT
GAATGGACTGTTCAAGAAGTCTACAGTTAACCCTGGAGCTTCATGCCTTC
GTCACCGACGTGGATACTCTCGGTAATGTTGCGGCATTGGTGGGTGGGAA
TCAGCACTTGTTTTTCGCATCGGTTTGTAGAAGCTGGAGGGTTGCGTGGC
GGCAACGACACCGAAGCACGTTGACCGCAATCGTACGACCGGATTCCTCT
GTATCTCAGCTCCTGTACAGCTTCGAGTGCGGCGCGAGAACAACTGCTGG
AGTCTGCGAGGCTGCTGCACGCGCTGGCAATCTCCAGGTTCTCCAATGTG
CCCGGCGAATCGGTTGTCCATGGCACACGAAAACATGGGGAAAGGCAGCC
CGCGGAGGTCACCTGGACGTTCTTGTCTGGGCGCAAGAGAATGGGTGTCC
GAAGGATGATGACACGTGCTTGGAGGCGGCTAGAGGAGGGCATCTACATA
TTCTTCAGTGGGCACGGACGTACGGATGTCCCTGGGCTCGGGACACTGTC
GTACCCGTGTCTGTGGGTTCTATCGAGCACAGCAACAACTATGTCAGTCA
CACGTGGGACACCTGCAGTGTGTCTGCCGAGGCAGGGCATCTGCATATCC
TGAAATGGGCGAAAGAGAACGGATGTCCGTGGGATTCAAAAACTTGCTCT
GGTGCCGCCACTGGAGGTCACCTGAACGTTCTACAGTGGGCGAGAGAGAA
CGGCTGTGAATGGGACTCTACAACATGTTTTCGCGCCGCGGAGGGGGGTT
TTCTTGAGACTCTCCAATGGGCCCGTCTGAATGGCTGCCCTTGGGATGCG
ATGACATGTCTAGGAGCTGCCGACGGAGGGCACTTGGAGATTCTGCGGTA
CGCACGGGAAAACGGATGCCCATTGCACGCAAAAACCTGGCGTACTGCGG
CCCTACAAGGCCATCTACACGTCCTTCTGTGGGGTCTAGAAAATAGCTAT
CCAATGGGCGATGATAGCTCTCTGGAGGCACTAATGGGCGGATCCGTACC
CTGA back to top
|