mRNA_H-paniculata_contig18428.4527.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig18428.4527.1
Unique NamemRNA_H-paniculata_contig18428.4527.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig18428.4527.1 vs. uniprot
Match: A0A6H5LEG7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LEG7_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 5.840e-7
Identity = 27/35 (77.14%), Postives = 31/35 (88.57%), Query Frame = 2 
Query:  179 KSRTEAFSALPVGTQAYFNSQAGAGVLATVPGSVA 283
            KSRTEAFSA+PVG QAYFNSQAG G+LA +PG +A
Sbjct:  741 KSRTEAFSAVPVGAQAYFNSQAGVGMLAVIPGGIA 775
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BLAST of mRNA_H-paniculata_contig18428.4527.1 vs. uniprot
Match: D7G3P6_ECTSI (Origin recognition complex subunit 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3P6_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 7.670e-7
Identity = 27/35 (77.14%), Postives = 30/35 (85.71%), Query Frame = 2 
Query:  179 KSRTEAFSALPVGTQAYFNSQAGAGVLATVPGSVA 283
            KSRTEAFSA+PVG QAYFNSQAG G LA +PG +A
Sbjct:   52 KSRTEAFSAVPVGAQAYFNSQAGVGTLAVIPGGIA 86
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18428.4527.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LEG7_9PHAE5.840e-777.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3P6_ECTSI7.670e-777.14Origin recognition complex subunit 2 n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig18428contigH-paniculata_contig18428:1393..3376 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size288
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig18428.4527.1prot_H-paniculata_contig18428.4527.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig18428 1393..3357 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929428.8621032-CDS-H-paniculata_contig18428:1392..14971622929428.8621032-CDS-H-paniculata_contig18428:1392..1497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18428 1393..1497 -
1691480857.3719683-CDS-H-paniculata_contig18428:1392..14971691480857.3719683-CDS-H-paniculata_contig18428:1392..1497Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18428 1393..1497 -
1622929428.8758872-CDS-H-paniculata_contig18428:1820..18951622929428.8758872-CDS-H-paniculata_contig18428:1820..1895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18428 1821..1895 -
1691480857.3803692-CDS-H-paniculata_contig18428:1820..18951691480857.3803692-CDS-H-paniculata_contig18428:1820..1895Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18428 1821..1895 -
1622929428.888149-CDS-H-paniculata_contig18428:3270..33571622929428.888149-CDS-H-paniculata_contig18428:3270..3357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18428 3271..3357 -
1691480857.3885024-CDS-H-paniculata_contig18428:3270..33571691480857.3885024-CDS-H-paniculata_contig18428:3270..3357Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig18428 3271..3357 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929428.909268-UTR-H-paniculata_contig18428:3357..33761622929428.909268-UTR-H-paniculata_contig18428:3357..3376Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18428 3358..3376 -
1691480857.3967056-UTR-H-paniculata_contig18428:3357..33761691480857.3967056-UTR-H-paniculata_contig18428:3357..3376Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig18428 3358..3376 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig18428.4527.1

>prot_H-paniculata_contig18428.4527.1 ID=prot_H-paniculata_contig18428.4527.1|Name=mRNA_H-paniculata_contig18428.4527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=89bp
MWSSSDGGGDGEGDEGRNFFGDAESDFEEGNEDEMDDPNLGVADGSTSAR
ANKKSRTEAFSALPVGTQAYFNSQAGAGVLATVPGSVAT
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mRNA from alignment at H-paniculata_contig18428:1393..3376-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig18428.4527.1 ID=mRNA_H-paniculata_contig18428.4527.1|Name=mRNA_H-paniculata_contig18428.4527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1984bp|location=Sequence derived from alignment at H-paniculata_contig18428:1393..3376- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGAAGAGAAGCTGAGGGTGATGTGGTCATCTTCTGATGGTGGAGGTGATG
GTGAAGGGGACGAGGGCAGGAATTTCTTTGGAGATGCGGAGAGTGACTTT
GAAGAGGTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGTAT
GTGTTTTCATATTTTGTGCTTCGGTTCTTGTGCATGTGTAGTTTGATTTT
ATGCGTGATTTGTTTTACTGTTTTTTCGCCAAAGTAAAATACACGGGAAG
GGGGAGGGGGAGGACGTTCTCATAGAACTTTCGTTCCTACGTCAACCCGC
TCACTTGCCATAGTTGGTAGAAGTAAGCTCAAACAGTCATACAGAACACT
CCATTGTACTCGTGTTAAGGTTATGCAGCTGATTTCATACTTTGAGTTAT
GTATACTCTATCAGCAAAATTAGATCATGACCAATAAGGGGGGACATACT
CGTGTTTTGCATGCCGTGGTTAGTTGTTTGACAATTGACCAGTCGTCCTC
GAGAGGATGGAGCTCTGTTGCTATCAGAGCGATTTCCGATGGCCAATTGC
GCTCTTCATGTGTGCCTTGCATGAGGGAACGATCGCAGCGCGTTTAAACG
ATTGCTGCTACGCAGGTTGGAGAAGCACGCGCGCGCGTGTGTCTGTGTGT
GTGCTCGTTTTAATGTTGCCAACATTTTGTAATGCTGGTATCGAACGTCT
TTTGGAGACCGCGACTGTGTAGCTTGCATGTTTTTTCATCTGTAGTTTCT
TGATGATTTATGTGTTTGGTTTGTGCTGCTCGTTCGAATCGTCGTCAAAG
ATTCATTCAAACGGCGACTGTACTACCGTTGTGTACCAATCAAACAGATT
ATTTGTTCACGGGGTTGTTGCTCGAGTACAGAGCTGAAAAAGATGTTGCG
AAATGGTCGCAACCACGACAAGCTAGCGTGTTGATCAATAAAATAAATAA
TAATTCATGACGTCACGTGATGCGTTGTTTGTTCGGGCCGATTTTCTTTT
CAATTAACGAAAGAAAAAATTCAAGTGAAATTGTTTATATGTGCCGTTTT
TCGTCTAGTCATGGCGGCGACGTGACTGAATAATCACTTTATTTTGGCGT
GTTGTATTGTAACGTGTGTCTATATATAGATGCGTAGATGTTGGTGCTCC
CAAGCGTATTTAACATTATCACCATCATGCGAGTCTGTACATTTCACGGA
CGGTTGTGTAGAGCTCTCTGCTTTTCACGTCGATTGTATTCATTATTTGA
CAAAAGCTGTTGACCCACAGATTGCGAATTTGGCAACCAGGCCAACAGAT
GACGTCACGTACATTATATCACTCAATCGCATCATCTAAATACAATCACG
AAGTTGTATTACCTCTACATCACATAACCTCACTTGCATCACTCCAGAAA
CTTACTGTCACAAAGTTACCATTTTTTTTTTTTTTCCTTGCCTTTCGCTG
GTGCTTTTGTTTCTTCTCTTGGGTGCGGCAGGGGAACGAAGATGAGATGG
ACGACCCGAATCTGGGGGTGGCCGACGGCAGCACTAGCGCTCGTGCCAAC
AAGAAGGTATGGGAACCTTTGTCGTAAGTCCCCCCTAGCACTGTAGAGTA
CTGTCAGGACGCCCTCGGGTACATTATTTTCAGGCCGTTGATTCTACAGC
AGGTGTACAAATTCAGGAGAGGGATAAGGTAAATAGGGCAGGAAAAACGT
TTTCGAGCCATATTTGGTAACGTTGGGAAGAGCGATTGAAAAGCCGCAGT
CGCTAATCACTTCGATGAGAACGAAGCTCCGTCCTCCCGGGGCCTAACAA
ATACGGCATAGAGAACATGAGCACCCCCCCTCCCTCTCTCTCTCTCCCAT
ACCTCAATCCCCTCTTACCGTAACTGTAGTCCCGAACGGAGGCTTTTTCT
GCGCTCCCAGTAGGCACACAGGCGTACTTCAATAGCCAGGCAGGGGCAGG
AGTGCTCGCGACGGTGCCTGGGAGCGTGGCGACG
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Coding sequence (CDS) from alignment at H-paniculata_contig18428:1393..3376-

>mRNA_H-paniculata_contig18428.4527.1 ID=mRNA_H-paniculata_contig18428.4527.1|Name=mRNA_H-paniculata_contig18428.4527.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=534bp|location=Sequence derived from alignment at H-paniculata_contig18428:1393..3376- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGTGGTCATCTTCTGATGGTGGAGGTGATGGTGAAGGGGACGAGGGCAG
GAATTTCTTTGGAGATGCGGAGAGTGACTTTGAAGAGATGTGGTCATCTT
CTGATGGTGGAGGTGATGGTGAAGGGGACGAGGGCAGGAATTTCTTTGGA
GATGCGGAGAGTGACTTTGAAGAGGGGAACGAAGATGAGATGGACGACCC
GAATCTGGGGGTGGCCGACGGCAGCACTAGCGCTCGTGCCAACAAGAAGG
GGAACGAAGATGAGATGGACGACCCGAATCTGGGGGTGGCCGACGGCAGC
ACTAGCGCTCGTGCCAACAAGAAGTCCCGAACGGAGGCTTTTTCTGCGCT
CCCAGTAGGCACACAGGCGTACTTCAATAGCCAGGCAGGGGCAGGAGTGC
TCGCGACGGTGCCTGGGAGCGTGGCGACGTCCCGAACGGAGGCTTTTTCT
GCGCTCCCAGTAGGCACACAGGCGTACTTCAATAGCCAGGCAGGGGCAGG
AGTGCTCGCGACGGTGCCTGGGAGCGTGGCGACG
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