mRNA_H-paniculata_contig18253.4450.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig18253.4450.1 vs. uniprot
Match: D8LLN0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLN0_ECTSI) HSP 1 Score: 299 bits (765), Expect = 1.010e-82 Identity = 305/814 (37.47%), Postives = 390/814 (47.91%), Query Frame = 1
Query: 1 GTGSGWRNTKEAGVQVAVGIDVEDESHMEEQVYYLLGKLDLTFKRREDSLFAYRMEAEEGAREARALLGEAAAQHRRECGGNGGVSRIPPLR---GSRERPAGAPRPALHASNLLFTAAAILHDANMRAHQQSP----STGAVTEQSRSLTSSCRTMCRRRMKSSPAEQSLITLADEVMKALEEEQNRSDAFTQRLKFVTDSGNPPSFSR----GMPPSGVPPLVWGMIIHVVGKLAQAYKTIVEARVFEREVADADLVAAITLGQSSGIGDDDGFHQSGFGCDTAPALWRRVGGPDHS-------STRVSDGPEAVNPVGTLVSEQGKGNTFCEFGWGADNYTHFRSDRPASATVVGAGDAAGGGRFARSPT*CPPSRHYTSSQNRRSSRWQSCRVASSRNYT-----KDASTAGGGGQLIPGGPREQEFG--VVSPRTTPGT----RNRDHNQQQLGDGGKSAAVALVEAAAFSAVKRSELHARKCRPASACTEGRSIGTATQGTTGVTDCGNNIYSSSAEVDQAAEKIQGDA--TYRRGHDAKSGGGRTTSDDAGHNIANVIAIRMVS-------PTRPAQSASSRRGSVGKPRPHSAGAGERGMIDTRIWSSS--IVQPAVSL--CR----TRNRVRFEGA-------SDHSPATHVGAVPAFLERKTKELERVRAIERERIAAVEGRFAEGIQSGQEGSASAAESADAVCSAIGHLGGHSCDDDNSAISTMERAGWGQESEFRFVESGGYYVAGARKTTRTSSSPTSPTVARLVEGVTSVDDMEGLLPDAGEQAFFEAWKPKDCGDDVS 2283
G G +++ VQVA GIDVEDE ME+QVY LLGKLDL KRRED L+AY EAEEGAREARALL AAAQH G GVSR P +R G RE PAGAPRPA++ +NLLFTAA +L A +P S+ E+ S + + RR + SPAE++L+ LADEV+ AL+ EQ RSDA +R + D N SR G PP GVPPL+W M IH+VGKLA+A++T VEAR FEREV DA+LVAA+TLG+SS + G + SG + + G + + R + E+ EQ + FGWGAD Y+ R RP + V G G ++ SPT P + + R Q R S++ T + AST G + G E + S RT G +N+D +QQ D SAAVA VEAA F V+ S LH R P SA EGRS + SA + +A +K G+ T GH +G DA + S P R + + + RP SAG ++DTR WSS+ +V+ + CR TR VRFE + S TH GAVP FL RK +EL R + AAV GRF G + E A G GG D ++ WG+E +E GG +GA SS RL + + D EGL+PDAGEQAFF+AWKP D+S
Sbjct: 1038 GGSPGLPRSRDVHVQVAGGIDVEDEPLMEQQVYGLLGKLDLLLKRREDVLWAYHREAEEGAREARALLASAAAQH--HPGQAWGVSRPPNVRQLIGGREGPAGAPRPAINPTNLLFTAAVVLDSVAAAAAGPTPEPTVSSAPTPEKIPSASGGSES---RRQRYSPAEKALLELADEVVAALDVEQRRSDASAERRRLAVDRHNNSGDSRFQALGRPPLGVPPLIWAMEIHLVGKLARAFRTAVEARGFEREVEDANLVAAVTLGRSSPPSSNGGKNDSGPPWHLEHRMLSVLRGDEEEERERLQRARREFENTESCTMAANNQREQQR------FGWGADTYSPRRIYRPMTGNV---GTDEGQPKYGSSPTTSPRRKEGLA-------RGQQSRPDSTKGRTGVRDGRHASTFNRPGTMARGSTFESKAKQQCSSSRTVDGNTRDLQNQDQREQQRQD---SAAVARVEAAVFDTVRPSRLHPR---PGSASFEGRSGRVGFYEGCSTLAATERLRPQSARLPEAHDKFLGEGGRTTVGGH---TGASHAMPSDAHRSGRRAFEGNSTSGPNGEERPVRTTMTTVALTANTTARRPASAGGR---VVDTRTWSSNSNVVEAGTGVFRCRPNKTTRAAVRFEASATEGGVSSSQLVPTHPGAVPQFLLRKERELLEAH---RHKQAAVNGRFEVVPDQGDDIGGCGDEGVSGY--AAGGSGGDIKSDRRVMNASEISDRWGREIGDT-LEQGGDGGSGAYGGRVLLSS------VRLEDSM----DGEGLMPDAGEQAFFDAWKPTGYDIDLS 1802
BLAST of mRNA_H-paniculata_contig18253.4450.1 vs. uniprot
Match: A0A6H5L495_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L495_9PHAE) HSP 1 Score: 197 bits (502), Expect = 7.400e-49 Identity = 266/802 (33.17%), Postives = 353/802 (44.01%), Query Frame = 1
Query: 25 TKEAGVQVAVGIDVEDESHMEEQVYYLLGKLDLTFKRREDSLFAYRMEAEEGAREARALLGEAAAQHRRECGGNGGVSRIPPLRGSRERPAGAPRPALHASNLLFTAAAILHDANMRAHQQSP----STGAVTEQSRSLTSSCRTMCRRRMKSSPAEQSLITLADEVMKALEEEQNRSDAFTQRLKFVTDSGNPPSFSR----GMPPSGVPPLVWGMIIHVVGKLAQAYKTIVEARVFEREVADADLVAAITLGQSSGIGDDDGFHQSGFGCDTAPALWRRVGGPDHS-------STRVSDGPEAVNPVGTLVSEQGKGNTFCEFGWGADNYTHFRSDRPASATVVGAGDAAGGGRFARSPT*CPPSRHYTSSQNRRSSRWQSCRVASSRNYTKDASTAGGGGQLIPGGPRE----QEFGVVSPRTTPGT----RNRDHNQQQLGDGGKSAAVALVEAAAFSAVKRSELHARKCRPASACTEGRSIGTATQGTTGVTDCGNNIYSSSAEVDQAAEKIQGDA--TYRRGHDAKSGGGRTTSDDAGHNIANVIAIRMVS-------PTRPAQSASSRRGSVGKPRPHSAGAGERGMIDTRIWSSS--IVQPAVSL--CR----TRNRVRF-----EGA--SDHSPATHVGAVPAFLERKTKELERVRAIERERIAAVEGRFAEGIQSGQEGSASAAESADAVCSAIGHLGGHSCDD--DNSAISTMERAGWGQESEFRFVESGGYYVAGARKTTRTSSSPTSPTVARLVEGVTSVDDMEGLLPDAGEQAFFEAWKPKDCGDDVS 2283
+++ VQVA GIDVEDE ME+Q +R E SL ++ +A LGE A R N V A++ ++LLFTAA +L A +P ++ E++ S + RR + SPAE++L+ LADEV+ AL+ EQ RSDA +R +FV D N SR G PP GVPPL+W M IH+VGKLA+A++T VEAR FEREV DA+LVAA+TLG+SS G + SG + + G + + R + E+ V +Q FGWGAD Y+ R+ RP + G G + SPT P R SR S + + + AST G + G E Q++ S RT G +N++ +QQ D SAAVA VEAA F V+ S LH R P SA EGRS + SA + +A +K G+ T GH +G T DA + S P R + + + RP SAG ++DTR WSS+ +V+ + CR TR VRF EG S TH GAVP FL RK +EL R++ AAV GRF + Q A+ GG D D SA +R WG+E +E GG +GA SS RL + + D EGLLPDAGEQAFF+AWKP D+S
Sbjct: 1114 SRDVHVQVAGGIDVEDEPLMEQQ--------RKEPERPEPSLLQLQLST------TQAKLGECLA---RRMSDNLSVDGR----------------AINPTDLLFTAAVVLDSVTAGASGPTPEPTVASAPTPEKNPSANGGSES---RRQRYSPAEKALLKLADEVVAALDVEQRRSDASAERRRFVADRHNNFGDSRTQALGRPPLGVPPLIWAMEIHLVGKLARAFRTAVEARGFEREVEDANLVAAVTLGRSSPPSSKGGKNDSGPPWHLEHRMLSVLRGDEDEEKERRQRAQREFENDESCTMVNNQREQQ-------RFGWGADTYSPRRNHRPNTGN---GGMDEGQPNYGSSPTTSP--RRKEGLARGEQSRPDSTKGRNGVRDGRHASTFNRPGTMARGSTFESRARQQYS--SSRTVDGNARCLQNQEQREQQRQD---SAAVARVEAAVFDTVRPSRLHPR---PGSASFEGRSGRVGFYEGCSALAATERLRPQSARLPEAHDKFLGERGRTTVGGH---TGASHATPSDAHCSARRAFEGNSTSGPNGEERPVRTTMTTVALTANTTARRPCSAGGR---VVDTRTWSSNSNVVEAGTGVFRCRPNKTTRAAVRFGASATEGGVPSSQLVPTHPGAVPRFLLRKEREL---LESHRQKQAAVNGRFE--VVPDQADDIGGCGDEGVSGHAVRGWGGDIESDRRDMSASEISDR--WGREVGDT-LEQGGDGGSGAYGGRVLLSS------VRLDDSM----DGEGLLPDAGEQAFFDAWKPTGYDIDLS 1835 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig18253.4450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig18253.4450.1 >prot_H-paniculata_contig18253.4450.1 ID=prot_H-paniculata_contig18253.4450.1|Name=mRNA_H-paniculata_contig18253.4450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=329bp MEEQVYYLLGKLDLTFKRREDSLFAYRMEAEEGAREARALLGEAAAQHRRback to top mRNA from alignment at H-paniculata_contig18253:129..4585+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig18253.4450.1 ID=mRNA_H-paniculata_contig18253.4450.1|Name=mRNA_H-paniculata_contig18253.4450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4457bp|location=Sequence derived from alignment at H-paniculata_contig18253:129..4585+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig18253:129..4585+ >mRNA_H-paniculata_contig18253.4450.1 ID=mRNA_H-paniculata_contig18253.4450.1|Name=mRNA_H-paniculata_contig18253.4450.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1974bp|location=Sequence derived from alignment at H-paniculata_contig18253:129..4585+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |