mRNA_H-paniculata_contig177.4219.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig177.4219.1
Unique NamemRNA_H-paniculata_contig177.4219.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig177.4219.1 vs. uniprot
Match: D7FJC7_ECTSI (Rab5, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJC7_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 1.080e-21
Identity = 41/43 (95.35%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 MSTGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 129
            MS+GRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIG 
Sbjct:    1 MSSGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGA 43
[Close]
BLAST of mRNA_H-paniculata_contig177.4219.1 vs. uniprot
Match: A0A662WWK7_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WWK7_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.470e-21
Identity = 40/43 (93.02%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 MSTGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 129
            MS GR CHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIGG
Sbjct:    1 MSQGRTCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGG 43
[Close]
BLAST of mRNA_H-paniculata_contig177.4219.1 vs. uniprot
Match: A0A482UWF8_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482UWF8_9ARCH)

HSP 1 Score: 85.9 bits (211), Expect = 2.960e-21
Identity = 38/44 (86.36%), Postives = 42/44 (95.45%), Query Frame = 1 
Query:    1 MSTGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGGK 132
            M+  RVCHFKLVLLGD+AVGKSCLVVRFVRDEFFE+QEPTIGG+
Sbjct:    1 MAAQRVCHFKLVLLGDSAVGKSCLVVRFVRDEFFEFQEPTIGGQ 44
[Close]
BLAST of mRNA_H-paniculata_contig177.4219.1 vs. uniprot
Match: A0A6V1MPB5_HETAK (Hypothetical protein n=2 Tax=Chattonellaceae TaxID=658124 RepID=A0A6V1MPB5_HETAK)

HSP 1 Score: 89.7 bits (221), Expect = 2.970e-21
Identity = 40/43 (93.02%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 MSTGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 129
            M++GRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIG 
Sbjct:    1 MASGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGA 43
[Close]
BLAST of mRNA_H-paniculata_contig177.4219.1 vs. uniprot
Match: W2R6W9_PHYPN (Uncharacterized protein n=2 Tax=Peronosporaceae TaxID=4777 RepID=W2R6W9_PHYPN)

HSP 1 Score: 85.9 bits (211), Expect = 4.130e-21
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MSTGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 129
            MS G+ CHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIG 
Sbjct:    1 MSQGKTCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGA 43
[Close]
BLAST of mRNA_H-paniculata_contig177.4219.1 vs. uniprot
Match: F0YJN1_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJN1_AURAN)

HSP 1 Score: 88.2 bits (217), Expect = 1.210e-20
Identity = 39/43 (90.70%), Postives = 42/43 (97.67%), Query Frame = 1 
Query:    1 MSTGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 129
            M++GRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIG 
Sbjct:    1 MASGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGA 43
[Close]
BLAST of mRNA_H-paniculata_contig177.4219.1 vs. uniprot
Match: A0A7S1XXR9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XXR9_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 7.410e-20
Identity = 36/43 (83.72%), Postives = 41/43 (95.35%), Query Frame = 1 
Query:    1 MSTGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 129
            M++ RVCHFKLVLLGDTAVGKSC+VVRFVRDEF+E+QEPTIG 
Sbjct:   23 MASNRVCHFKLVLLGDTAVGKSCIVVRFVRDEFYEFQEPTIGA 65
[Close]
BLAST of mRNA_H-paniculata_contig177.4219.1 vs. uniprot
Match: A0A7S3ZNA4_9STRA (Hypothetical protein n=6 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZNA4_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 7.590e-20
Identity = 39/43 (90.70%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MSTGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 129
            MS  RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIG 
Sbjct:    8 MSAARVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGA 50
[Close]
BLAST of mRNA_H-paniculata_contig177.4219.1 vs. uniprot
Match: A0A4D9D9M2_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D9M2_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 7.880e-20
Identity = 39/42 (92.86%), Postives = 39/42 (92.86%), Query Frame = 1 
Query:    4 STGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 129
            S  RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIG 
Sbjct:    9 SNNRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGA 50
[Close]
BLAST of mRNA_H-paniculata_contig177.4219.1 vs. uniprot
Match: A0A7S2RYM3_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RYM3_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.380e-19
Identity = 38/43 (88.37%), Postives = 40/43 (93.02%), Query Frame = 1 
Query:    1 MSTGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGG 129
            M+  RVCHFKLVLLGDTAVGKSCLVVRFVRDEFFE+QEPTIG 
Sbjct:    1 MAANRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEFQEPTIGA 43
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig177.4219.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FJC7_ECTSI1.080e-2195.35Rab5, RAB family GTPase n=2 Tax=Ectocarpus TaxID=2... [more]
A0A662WWK7_9STRA2.470e-2193.02Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A482UWF8_9ARCH2.960e-2186.36Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6V1MPB5_HETAK2.970e-2193.02Hypothetical protein n=2 Tax=Chattonellaceae TaxID... [more]
W2R6W9_PHYPN4.130e-2188.37Uncharacterized protein n=2 Tax=Peronosporaceae Ta... [more]
F0YJN1_AURAN1.210e-2090.70Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S1XXR9_9STRA7.410e-2083.72Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S3ZNA4_9STRA7.590e-2090.70Hypothetical protein n=6 Tax=Pelagomonas calceolat... [more]
A0A4D9D9M2_9STRA7.880e-2092.86Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2RYM3_9STRA1.380e-1988.37Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig177contigH-paniculata_contig177:3709..3843 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score90.9
Seed ortholog evalue1.6e-16
Seed eggNOG ortholog2880.D7FJC7
Preferred nameVPS21
KEGG koko:K07889,ko:K17785
KEGG Pathwayko04014,ko04144,ko04145,ko04962,ko05146,ko05152,map04014,map04144,map04145,map04962,map05146,map05152
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000011,GO:0000166,GO:0001882,GO:0001883,GO:0003674,GO:0003824,GO:0003924,GO:0005488,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005768,GO:0005769,GO:0005770,GO:0005886,GO:0006605,GO:0006623,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006897,GO:0006906,GO:0006914,GO:0006996,GO:0007032,GO:0007033,GO:0007034,GO:0007154,GO:0007165,GO:0007264,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0010008,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0016462,GO:0016482,GO:0016787,GO:0016817,GO:0016818,GO:0017076,GO:0017111,GO:0019001,GO:0019867,GO:0022411,GO:0022607,GO:0023052,GO:0030139,GO:0031090,GO:0031410,GO:0031901,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0031982,GO:0032386,GO:0032509,GO:0032511,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032879,GO:0032880,GO:0033036,GO:0033157,GO:0033365,GO:0034058,GO:0034613,GO:0035556,GO:0035639,GO:0036010,GO:0036094,GO:0036257,GO:0036258,GO:0042886,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044429,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0048284,GO:0048308,GO:0050789,GO:0050794,GO:0050896,GO:0051049,GO:0051179,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0051716,GO:0060341,GO:0061024,GO:0061025,GO:0061709,GO:0061912,GO:0061919,GO:0065007,GO:0070201,GO:0070727,GO:0070925,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0090087,GO:0090174,GO:0097159,GO:0097367,GO:0097708,GO:0098588,GO:0098657,GO:0098805,GO:1901265,GO:1901363,GO:1903008,GO:1903827
EggNOG free text desc.GTPase activity
EggNOG OGsKOG0092@1,KOG0092@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03029,ko04031,ko04131,ko04147
Exons1
Model size135
Cds size135
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929382.7036514-CDS-H-paniculata_contig177:3708..38431622929382.7036514-CDS-H-paniculata_contig177:3708..3843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig177 3709..3843 -
1691480839.2377858-CDS-H-paniculata_contig177:3708..38431691480839.2377858-CDS-H-paniculata_contig177:3708..3843Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig177 3709..3843 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig177.4219.1prot_H-paniculata_contig177.4219.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig177 3709..3843 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig177.4219.1

>prot_H-paniculata_contig177.4219.1 ID=prot_H-paniculata_contig177.4219.1|Name=mRNA_H-paniculata_contig177.4219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
MSTGRVCHFKLVLLGDTAVGKSCLVVRFVRDEFFEYQEPTIGGK*
back to top

mRNA from alignment at H-paniculata_contig177:3709..3843-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig177.4219.1 ID=mRNA_H-paniculata_contig177.4219.1|Name=mRNA_H-paniculata_contig177.4219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig177:3709..3843- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTACGGGAAGAGTTTGCCACTTCAAGCTGGTTCTGCTCGGAGACAC
GGCGGTGGGGAAATCATGTCTCGTCGTGCGGTTCGTCAGGGACGAATTCT
TCGAGTACCAGGAGCCCACAATTGGAGGTAAATAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig177:3709..3843-

>mRNA_H-paniculata_contig177.4219.1 ID=mRNA_H-paniculata_contig177.4219.1|Name=mRNA_H-paniculata_contig177.4219.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig177:3709..3843- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAGTACGGGAAGAGTTTGCCACTTCAAGCTGGTTCTGCTCGGAGACAC
GGCGGTGGGGAAATCATGTCTCGTCGTGCGGTTCGTCAGGGACGAATTCT
TCGAGTACCAGGAGCCCACAATTGGAGGTAAATAAATGAGTACGGGAAGA
GTTTGCCACTTCAAGCTGGTTCTGCTCGGAGACACGGCGGTGGGGAAATC
ATGTCTCGTCGTGCGGTTCGTCAGGGACGAATTCTTCGAGTACCAGGAGC
CCACAATTGGAGGTAAATAA
back to top