mRNA_H-paniculata_contig17197.4008.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig17197.4008.1 vs. uniprot
Match: D8LF19_ECTSI (DEAD box helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF19_ECTSI) HSP 1 Score: 305 bits (782), Expect = 1.710e-98 Identity = 147/167 (88.02%), Postives = 157/167 (94.01%), Query Frame = 1
Query: 1 MVDERDKGDKLWELLGKLHENPPKADHEKTIVFSSKKRMCDRITQQAWDRGFAVDSLHGDREQWERTKVMDKYRSGEVRLLVATDVAARGLDVKDIAYVINYDFPVDGVENYIHRIGRTARGNASGSAFTFFTSADAKFAGKLVDVLKGANQDVPPDLQKMDRSGGG 501
+VDERDKGDKLWELL KLHENPPKADH KTI+FSSKKR CD++ Q AWDRGFAVDSLHGDREQWERTKVMD+YRSGEVR+LVATDVAARGLDVKDI+YVINYDFPVDGVENYIHRIGRTARGNASG AFTFFTS+DAKFA KLV VL+GANQDVP +LQKMDR GGG
Sbjct: 374 IVDERDKGDKLWELLTKLHENPPKADHGKTIIFSSKKRNCDKLAQAAWDRGFAVDSLHGDREQWERTKVMDQYRSGEVRMLVATDVAARGLDVKDISYVINYDFPVDGVENYIHRIGRTARGNASGDAFTFFTSSDAKFANKLVGVLRGANQDVPAELQKMDRGGGG 540
BLAST of mRNA_H-paniculata_contig17197.4008.1 vs. uniprot
Match: A0A7S3H7A5_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H7A5_9STRA) HSP 1 Score: 199 bits (507), Expect = 1.020e-57 Identity = 98/168 (58.33%), Postives = 131/168 (77.98%), Query Frame = 1
Query: 10 ERDKGDKLWELLGKLHENPPKADHEKTIVFSSKKRMCDRITQQAWDRGFAVDSLHGDREQWERTKVMDKYRSGEVRLLVATDVAARGLDVKDIAYVINYDFP--VDGVENYIHRIGRTARGNASGSAFTFFTSADAKFAGKLVDVLKGANQDVPPDLQKMDRSGGGGR 507
+ +K DKL E+L +++ + + K+I+F S+K CDR+ WD G++VD+LHGD++Q+ RT+VMD +++G++RLLVATDVAARGLDVKDI VINYDFP V+GVE+Y+HRIGRTARGN G A+TFFT+ DAK A +L+ VLK ANQ+VP LQ+ DR GGGGR
Sbjct: 349 DNEKSDKLKEVLKEINPDNKPEEVPKSIIFVSRKSDCDRLANTLWDAGYSVDALHGDKQQFLRTRVMDNFKAGKLRLLVATDVAARGLDVKDIQVVINYDFPGGVNGVEDYVHRIGRTARGNNEGKAYTFFTAGDAKRATQLIGVLKRANQEVPEGLQRFDRGGGGGR 516
BLAST of mRNA_H-paniculata_contig17197.4008.1 vs. uniprot
Match: A0A835YJ27_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ27_9STRA) HSP 1 Score: 194 bits (493), Expect = 2.810e-56 Identity = 97/172 (56.40%), Postives = 129/172 (75.00%), Query Frame = 1
Query: 1 MVDERDKGDKLWELLGKLH--ENPPKADHEKTIVFSSKKRMCDRITQQAWDRGFAVDSLHGDREQWERTKVMDKYRSGEVRLLVATDVAARGLDVKDIAYVINYDFPVDGVENYIHRIGRTARGNASGSAFTFFTSADAKFAGKLVDVLKGANQDVPPDLQKMDRSGGGGRG 510
++ E DK D L ELL + +H K I+F+++KR CD ++++ W+ GF+VD+LHGD+EQ ERT VM K+++G +R++VATDVAARGLDVKDIA VINYDFP GVE+Y+HRIGRTARG A+G A TFFT D+K+A +L+ VL+GANQ VPP+L+ M GGRG
Sbjct: 283 VIGEGDKEDALKELLASRSTVDKEGVMEHGKIIIFTARKRTCDELSRRLWNGGFSVDALHGDKEQRERTSVMTKFKAGSIRMVVATDVAARGLDVKDIALVINYDFPTGGVEDYVHRIGRTARGGATGEAHTFFTRGDSKYAKELIRVLQGANQTVPPELEAM-----GGRG 449
BLAST of mRNA_H-paniculata_contig17197.4008.1 vs. uniprot
Match: A0A7S1DA53_CYCTE (Hypothetical protein (Fragment) n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1DA53_CYCTE) HSP 1 Score: 186 bits (472), Expect = 1.220e-55 Identity = 105/200 (52.50%), Postives = 130/200 (65.00%), Query Frame = 1
Query: 1 MVDERDKGDKLWELLGKLHENP-----------------PKADHEKTIVFSSKKRMCDRITQQAWDRGFAVDSLHGDREQWERTKVMDKYRSGEVRLLVATDVAARGLDVKDIAYVINYDFPV--DGVENYIHRIGRTARGNASGSAFTFFTSADAKFAGKLVDVLKGANQDVPPDLQKMDRSGGGGRGGRSFGWGGRGG 543
M + +K DKL E+L KL +N PK +H K IVF +KK C+ + Q WD G+AVDSLHGDR QWERTKVM+ ++SG++RLLVATDVAARGLDVKD+ V+NYD P +GVE+Y+HRIGRT R G ++TFFT D K A LV+VL ANQ++PP+L M G GGR G GGRGG
Sbjct: 34 MCSDAEKYDKLKEVLEKLTDNXXXXXXXXXXXXXXXXXSPK-NHVKMIVFVAKKMSCNVLADQLWDEGYAVDSLHGDRPQWERTKVMNAFKSGQLRLLVATDVAARGLDVKDVGAVVNYDMPAGSNGVEDYVHRIGRTGRAGNKGESYTFFTPGDRKCAKGLVEVLTKANQEIPPELDAMVPRFHRGYGGRGGGRGGRGG 232
BLAST of mRNA_H-paniculata_contig17197.4008.1 vs. uniprot
Match: A0A0L0FLW3_9EUKA (Uncharacterized protein n=1 Tax=Sphaeroforma arctica JP610 TaxID=667725 RepID=A0A0L0FLW3_9EUKA) HSP 1 Score: 191 bits (486), Expect = 1.410e-54 Identity = 99/180 (55.00%), Postives = 133/180 (73.89%), Query Frame = 1
Query: 1 MVDERDKGDKLWELLGKLHENPPKA-DHEKTIVFSSKKRMCDRITQQAWDRGFAVDSLHGDREQWERTKVMDKYRSGEVRLLVATDVAARGLDVKDIAYVINYDFPVDGVENYIHRIGRTARGNASGSAFTFFTSADAKFAGKLVDVLKGANQDVPPDLQKMDRSGGGGRGGRSFG-WGG 534
+VD K D+L +LL +L E A H K I+F+++K C+ + Q W+ GFAVD LHGDREQ+ERT +M +Y + ++R+LVATDVAARGLDV+DI VINYDFP +GVE+Y+HRIGRT RGN +G+++TFFT+ DAK A +L+ V+ A +D+ P+LQ+MDR G GRGG S WGG
Sbjct: 361 IVDNHSKFDELKKLLTELSETEDAAKSHPKMIIFTARKHTCNDLGNQLWESGFAVDCLHGDREQFERTNIMKQYVANDLRMLVATDVAARGLDVRDIKVVINYDFPSNGVEDYVHRIGRTGRGNDTGASYTFFTNDDAKHANELIQVMVDAGKDISPELQRMDR--GKGRGGSSKPRWGG 538
BLAST of mRNA_H-paniculata_contig17197.4008.1 vs. uniprot
Match: A0A7S2YLW6_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YLW6_9STRA) HSP 1 Score: 182 bits (463), Expect = 4.240e-51 Identity = 99/188 (52.66%), Postives = 125/188 (66.49%), Query Frame = 1
Query: 1 MVDERDKGDKLWELLGKLHENPPKAD----------HEKTIVFSSKKRMCDRITQQAWDRGFAVDSLHGDREQWERTKVMDKYRSGEVRLLVATDVAARGLDVKDIAYVINYDFP--VDGVENYIHRIGRTARGNASGSAFTFFTSADAKFAGKLVDVLKGANQDVPPDLQKMDRSGGGGRGGRSFGW 528
M + +K DKL ++L +L + AD H K IVF +KK C + + WD GFAVDSLHGDR QWERT+VM ++SG++RLL+ATDVAARGLDVKD+ V+NYD P V+ VE+Y+HRIGRT R A G A+TFFT D K A KLV+VL A Q++P +LQ M R GGRGG G+
Sbjct: 348 MCRDDEKFDKLIDILKELTKEAEPADGPTPAGGGKHHAKVIVFVAKKISCHDLANRLWDDGFAVDSLHGDRAQWERTRVMTAFKSGQLRLLIATDVAARGLDVKDVGVVVNYDMPAGVNAVEDYVHRIGRTGRAGAKGKAYTFFTQDDRKAATKLVEVLTKAEQEIPAELQAMVRPRFGGRGGGRGGY 535
BLAST of mRNA_H-paniculata_contig17197.4008.1 vs. uniprot
Match: A0A7S1B560_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B560_9STRA) HSP 1 Score: 176 bits (445), Expect = 1.720e-50 Identity = 94/179 (52.51%), Postives = 124/179 (69.27%), Query Frame = 1
Query: 1 MVDERDKGDKLWELLGKLHENPPKAD-HEKTIVFSSKKRMCDRITQQAWDRGFAVDSLHGDREQWERTKVMDKYRSGEVRLLVATDVAARGLDVKDIAYVINYDFPV--DGVENYIHRIGRTARGNASGSAFTFFTSADAKFAGKLVDVLKGANQDVPPDLQKMDRS----GGGGRGGR 516
M +E +K DKL +L +L E K + H + IVF ++K CD + + W+ G+AVDSLHGDR+QWERTKV++ ++SG +R+LVATDVAARGLDVK + V+NYD P +GVE+Y+HRIGRT R A G A FFT +D+K A +LV+VL+ A Q +P L M R GGGG GGR
Sbjct: 171 MNNEEEKMDKLKSILDELSEGGTKKESHGRAIVFVARKMSCDALANEMWELGYAVDSLHGDRQQWERTKVINAFKSGNLRMLVATDVAARGLDVKGVELVVNYDMPAGQNGVEDYVHRIGRTGRAGAKGLAHAFFTRSDSKRARELVEVLQKAGQVIPDWLASMGRPRGRFGGGGYGGR 349
BLAST of mRNA_H-paniculata_contig17197.4008.1 vs. uniprot
Match: B7S475_PHATC (Predicted protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7S475_PHATC) HSP 1 Score: 180 bits (456), Expect = 3.830e-50 Identity = 95/174 (54.60%), Postives = 120/174 (68.97%), Query Frame = 1
Query: 1 MVDERDKGDKLWELLGKLHENPPKADHEKTIVFSSKKRMCDRITQQAWDRGFAVDSLHGDREQWERTKVMDKYRSGEVRLLVATDVAARGLDVKDIAYVINYDFP--VDGVENYIHRIGRTARGNASGSAFTFFTSADAKFAGKLVDVLKGANQDVPPDLQKMDRS--GGGGRG 510
M E +K DKL ++L L H K IVF +KK C+ + + W+ GFAVDSLHGDR QWERT+VM ++ G++R+L+ATDVAARGLDVKD+ V+NYD P V+GVE+Y+HRIGRT R G A+TFFT D K A +LV VL A Q++PP+LQ M R GGGGRG
Sbjct: 366 MCSESEKLDKLEQILRDLM-------HGKIIVFVAKKISCNDLANRLWEDGFAVDSLHGDRPQWERTRVMQAFKGGQLRVLIATDVAARGLDVKDVGVVVNYDMPSGVNGVEDYVHRIGRTGRAGNKGKAYTFFTQGDRKNATQLVQVLTKAQQEIPPELQAMARPRFGGGGRG 532
BLAST of mRNA_H-paniculata_contig17197.4008.1 vs. uniprot
Match: A0A7S2RMQ1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RMQ1_9STRA) HSP 1 Score: 180 bits (456), Expect = 4.530e-50 Identity = 102/197 (51.78%), Postives = 132/197 (67.01%), Query Frame = 1
Query: 1 MVDERDKGDKLWELLGKL-HENPPKAD------------HEKTIVFSSKKRMCDRITQQAWDRGFAVDSLHGDREQWERTKVMDKYRSGEVRLLVATDVAARGLDVKDIAYVINYDFP--VDGVENYIHRIGRTARGNASGSAFTFFTSADAKFAGKLVDVLKGANQDVPPDLQKMDRSGGGGRGGRSFGWGGRGGG 546
MV++ +K D+L ++L L +E P+ + H K IVF ++K CD + Q WD GFAVDSLHGDR QWERTKV++ +++G +R+L+ATDVAARGLDVK + V+NYD P V+GVE+Y+HRIGRT R A G A TFFTS D K AGKL++VLK A Q++P L+ M GRGGR GG GGG
Sbjct: 365 MVEDFEKLDRLKKILTDLTNEGVPEGEDATKARDLGGKKHPKVIVFVARKVNCDSLANQLWDDGFAVDSLHGDRVQWERTKVINAFKAGTLRMLIATDVAARGLDVKGVGMVVNYDMPLGVNGVEDYVHRIGRTGRAGAKGLADTFFTSGDRKCAGKLIEVLKHAGQEIPAALEAMAPRFSQGRGGR----GGYGGG 557
BLAST of mRNA_H-paniculata_contig17197.4008.1 vs. uniprot
Match: B8BR52_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BR52_THAPS) HSP 1 Score: 177 bits (450), Expect = 5.490e-50 Identity = 91/165 (55.15%), Postives = 113/165 (68.48%), Query Frame = 1
Query: 1 MVDERDKGDKLWELLGKLHENPPKADHEKTIVFSSKKRMCDRITQQAWDRGFAVDSLHGDREQWERTKVMDKYRSGEVRLLVATDVAARGLDVKDIAYVINYDFPV--DGVENYIHRIGRTARGNASGSAFTFFTSADAKFAGKLVDVLKGANQDVPPDLQKMDR 489
M E DK D+L E+L L H K IVF KK + + Q WD GFAVDSLHGDREQWERTKV++ ++ G +RLL+ATDVAARGLDVKD+ V+NYD PV +G E+YIHRIGRT R A G A+T FT D K A +LV++L+ A Q+VP +L+ M R
Sbjct: 276 MCSEDDKIDRLKEILTDLK-------HSKVIVFVGKKYVAHELANQLWDEGFAVDSLHGDREQWERTKVINAFKQGTLRLLIATDVAARGLDVKDVGVVVNYDMPVGVNGAEDYIHRIGRTGRAGAKGIAYTMFTPGDKKLATQLVEILEKAEQEVPAELKAMAR 433 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig17197.4008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig17197.4008.1 >prot_H-paniculata_contig17197.4008.1 ID=prot_H-paniculata_contig17197.4008.1|Name=mRNA_H-paniculata_contig17197.4008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=204bp MVDERDKGDKLWELLGKLHENPPKADHEKTIVFSSKKRMCDRITQQAWDRback to top mRNA from alignment at H-paniculata_contig17197:1949..4437- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig17197.4008.1 ID=mRNA_H-paniculata_contig17197.4008.1|Name=mRNA_H-paniculata_contig17197.4008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2489bp|location=Sequence derived from alignment at H-paniculata_contig17197:1949..4437- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig17197:1949..4437- >mRNA_H-paniculata_contig17197.4008.1 ID=mRNA_H-paniculata_contig17197.4008.1|Name=mRNA_H-paniculata_contig17197.4008.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1224bp|location=Sequence derived from alignment at H-paniculata_contig17197:1949..4437- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |