mRNA_H-paniculata_contig16660.3762.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig16660.3762.1 vs. uniprot
Match: D7G556_ECTSI (Dimethylmenaquinone methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G556_ECTSI) HSP 1 Score: 173 bits (439), Expect = 7.810e-53 Identity = 84/101 (83.17%), Postives = 93/101 (92.08%), Query Frame = 1
Query: 1 IRQLRFPVYCRFVNPMAGRCVILDRKLMQIPVTIGGVEINSGDVIVGDDDGVVVLGSDLDKIKDLAIRASEILRNERAVLTEVLDNNRCLLEFMNLMDSHK 303
I +LRFPVYCRFVNPMAGRC+ LDR LMQ+PVTIGGVEIN GDVI+GDDDGVVVLG+DLDKI+ A+ ASEILRNE AVLTEVLDNNRCLLEFM++MDSHK
Sbjct: 106 IARLRFPVYCRFVNPMAGRCITLDRDLMQVPVTIGGVEINPGDVIMGDDDGVVVLGNDLDKIQKTALAASEILRNESAVLTEVLDNNRCLLEFMDMMDSHK 206
BLAST of mRNA_H-paniculata_contig16660.3762.1 vs. uniprot
Match: A0A6H5L9B9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9B9_9PHAE) HSP 1 Score: 172 bits (435), Expect = 4.670e-48 Identity = 83/101 (82.18%), Postives = 93/101 (92.08%), Query Frame = 1
Query: 1 IRQLRFPVYCRFVNPMAGRCVILDRKLMQIPVTIGGVEINSGDVIVGDDDGVVVLGSDLDKIKDLAIRASEILRNERAVLTEVLDNNRCLLEFMNLMDSHK 303
I +LRFPVYCRFVNPMAGRC+ LDR LMQ+PVTIGGV+IN GDVI+GDDDGVVVLG+DLDKI+ A+ ASEILRNE AVLTEVLDNNRCLLEFM++MDSHK
Sbjct: 588 IARLRFPVYCRFVNPMAGRCITLDRDLMQVPVTIGGVKINPGDVIMGDDDGVVVLGNDLDKIQKTALAASEILRNESAVLTEVLDNNRCLLEFMDMMDSHK 688
BLAST of mRNA_H-paniculata_contig16660.3762.1 vs. uniprot
Match: A0A835YLR9_9STRA (Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLR9_9STRA) HSP 1 Score: 115 bits (287), Expect = 3.180e-29 Identity = 55/98 (56.12%), Postives = 75/98 (76.53%), Query Frame = 1
Query: 7 QLRFPVYCRFVNPMAGRCVILDRKLMQIPVTIGGVEINSGDVIVGDDDGVVVLGSDLDKIKDLAIRASEILRNERAVLTEVLDNNRCLLEFMNLMDSH 300
+L FP Y R V+PMAG CV LD+ L+ +PVT+ GV + +GDV+ GD DGVV LG D+D ++ LA RA+EI ++ER VL EVL+++RCL EFM ++DSH
Sbjct: 163 RLDFPFYSRSVSPMAGVCVTLDQSLLGVPVTVSGVTVANGDVLFGDQDGVVNLGQDMDNVELLARRAAEIRQHERLVLKEVLEHDRCLAEFMTILDSH 260
BLAST of mRNA_H-paniculata_contig16660.3762.1 vs. uniprot
Match: A0A832ZZF5_9EURY (RraA family protein n=1 Tax=Methanothermococcus okinawensis TaxID=155863 RepID=A0A832ZZF5_9EURY) HSP 1 Score: 64.3 bits (155), Expect = 2.280e-10 Identity = 34/84 (40.48%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 1 IRQLRFPVYCRFVNPMAGRCVILDRKLMQIPVTIGGVEINSGDVIVGDDDGVVVLGSDLDKIKDLAIRASEILRNERAVLTEVL 252
IR++RFPV+ R P AG LDR +M + VT GG+ +N GD++VGD +GVVV+ + D++ ++ R EI R E + ++
Sbjct: 101 IRRVRFPVFSRGYTPRAG--APLDRGVMGVTVTCGGIRVNPGDIVVGDCNGVVVI--ERDRLGEVLERVKEIKRKESKIRDRIM 180
BLAST of mRNA_H-paniculata_contig16660.3762.1 vs. uniprot
Match: A0A401HPN3_9EURY (3-hexulose-6-phosphate synthase n=3 Tax=Methanococcales TaxID=2182 RepID=A0A401HPN3_9EURY) HSP 1 Score: 63.9 bits (154), Expect = 3.450e-10 Identity = 35/84 (41.67%), Postives = 53/84 (63.10%), Query Frame = 1
Query: 1 IRQLRFPVYCRFVNPMAGRCVILDRKLMQIPVTIGGVEINSGDVIVGDDDGVVVLGSDLDKIKDLAIRASEILRNERAVLTEVL 252
IR++RFPV+ R P AG LDR +M IPV G + SGDVI+GD +GVVV+ + D+++++ +A EI R E + ++
Sbjct: 105 IRRIRFPVFSRGYTPKAG--TPLDRGVMGIPVNCGDTTVKSGDVIIGDCNGVVVI--ERDRVEEVLEKAKEIKRKESKIRDRIM 184
BLAST of mRNA_H-paniculata_contig16660.3762.1 vs. uniprot
Match: A0A3D5DEW3_9GAMM (Dimethylmenaquinone methyltransferase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3D5DEW3_9GAMM) HSP 1 Score: 63.2 bits (152), Expect = 9.380e-10 Identity = 41/100 (41.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query: 1 IRQLRFPVYCRFVNPMAGRCVILDRKLMQIPVTIGGVEINSGDVIVGDDDGVVVLGSDLDKIKDLAIRASEILRNERAVLTEVLDNNRCLLEFMNLMDSH 300
IR L PVY R +P++G L + QI + GGVE+N GDV+ GDDDG++V GS +D++ L A I E+AV+ E L N LL +N + +
Sbjct: 110 IRTLDMPVYARGSSPVSGTTNTLGER--QIKIDCGGVEVNPGDVVFGDDDGIIV-GS-IDELAALIPSAETIKSTEQAVI-EKLANGTSLLSLLNFAEHY 204
BLAST of mRNA_H-paniculata_contig16660.3762.1 vs. uniprot
Match: A0A523CJ23_9BACT (Bifunctional hexulose-6-phosphate synthase/ribonuclease regulator n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A523CJ23_9BACT) HSP 1 Score: 64.3 bits (155), Expect = 9.710e-10 Identity = 38/97 (39.18%), Postives = 56/97 (57.73%), Query Frame = 1
Query: 1 IRQLRFPVYCRFVNPMAGRCVILDRKLMQIPVTIGGVEINSGDVIVGDDDGVVVLGSDLDKIKDLAIRASEILRNERAVLTEVLDNNRCLLEFMNLM 291
IR+L+FP + +FV P AG M++PVTI GV I SGD IVGD+DG++V+ K +++A A + E + E+L N L E + L+
Sbjct: 337 IRKLKFPTFTKFVMPNAGEPKGFGE--MEVPVTISGVRIKSGDWIVGDEDGLIVVPKQ--KAREMANLAMDCCERENRLREEILGNKTSLGEVIELL 429
BLAST of mRNA_H-paniculata_contig16660.3762.1 vs. uniprot
Match: A0A7J3GCU0_9ARCH (RraA family protein n=1 Tax=Candidatus Bathyarchaeota archaeon TaxID=2026714 RepID=A0A7J3GCU0_9ARCH) HSP 1 Score: 60.8 bits (146), Expect = 1.400e-9 Identity = 30/57 (52.63%), Postives = 43/57 (75.44%), Query Frame = 1
Query: 1 IRQLRFPVYCRFVN--PMAGRCVILDRKLMQIPVTIGGVEINSGDVIVGDDDGVVVL 165
I+++RFPV+CR + + GR I ++ + IP++IGGV +N GDVIVGDDDGVVV+
Sbjct: 36 IQRMRFPVFCRAIGRTEVVGRLEI-KQEFINIPISIGGVTVNPGDVIVGDDDGVVVV 91
BLAST of mRNA_H-paniculata_contig16660.3762.1 vs. uniprot
Match: A0A662JPP5_9CREN (Bifunctional hexulose-6-phosphate synthase/ribonuclease regulator n=2 Tax=Thermoprotei archaeon TaxID=2250277 RepID=A0A662JPP5_9CREN) HSP 1 Score: 63.5 bits (153), Expect = 1.810e-9 Identity = 33/83 (39.76%), Postives = 51/83 (61.45%), Query Frame = 1
Query: 1 IRQLRFPVYCRFVNPMAGRCVILDRKLMQIPVTIGGVEINSGDVIVGDDDGVVVLGSDLDKIKDLAIRASEILRNERAVLTEV 249
IR+LRFP Y R +NP AG L + + +T GGV++ GD ++GDD+GVVV+ DL ++A RA +++ E + E+
Sbjct: 333 IRELRFPAYARHINPRAGEPKGLGE--INVEITCGGVKVEPGDWVIGDDNGVVVVPKDL--AVEIANRAIDVMEKENRIREEI 411
BLAST of mRNA_H-paniculata_contig16660.3762.1 vs. uniprot
Match: UPI001FE20DBC (RraA family protein n=1 Tax=Halalkalicoccus paucihalophilus TaxID=1008153 RepID=UPI001FE20DBC) HSP 1 Score: 60.5 bits (145), Expect = 2.300e-9 Identity = 40/94 (42.55%), Postives = 57/94 (60.64%), Query Frame = 1
Query: 1 IRQLRFPVYCRFVNPM--AGRCVILDRKLMQIPVTIGGVEINSGDVIVGDDDGVVVLGSDLDKIKDLAIRASEILRNERAVLTEVLDNNRCLLE 276
+R L FPV+ R V P +GR + +R +PVTIGGV I+ GDV+VGD+ GVV + D D ++D+ A I + ER V +++D R L E
Sbjct: 39 VRNLGFPVFARTVTPRGPSGRKEV-ERN---VPVTIGGVSIDPGDVLVGDESGVVAI--DRDAVEDVTSAAETIAQTEREV-GQLIDEGRALEE 125 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16660.3762.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig16660.3762.1 >prot_H-paniculata_contig16660.3762.1 ID=prot_H-paniculata_contig16660.3762.1|Name=mRNA_H-paniculata_contig16660.3762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=110bp IRQLRFPVYCRFVNPMAGRCVILDRKLMQIPVTIGGVEINSGDVIVGDDDback to top mRNA from alignment at H-paniculata_contig16660:154..3395+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig16660.3762.1 ID=mRNA_H-paniculata_contig16660.3762.1|Name=mRNA_H-paniculata_contig16660.3762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3242bp|location=Sequence derived from alignment at H-paniculata_contig16660:154..3395+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig16660:154..3395+ >mRNA_H-paniculata_contig16660.3762.1 ID=mRNA_H-paniculata_contig16660.3762.1|Name=mRNA_H-paniculata_contig16660.3762.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=660bp|location=Sequence derived from alignment at H-paniculata_contig16660:154..3395+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |