mRNA_H-paniculata_contig1650.3702.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig1650.3702.1
Unique NamemRNA_H-paniculata_contig1650.3702.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig1650.3702.1 vs. uniprot
Match: D7FKT1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKT1_ECTSI)

HSP 1 Score: 156 bits (395), Expect = 1.140e-42
Identity = 116/231 (50.22%), Postives = 131/231 (56.71%), Query Frame = 1 
Query:    1 MKPMKVLSAEGNKGVPLDPALGDLLQGLLKLDSRHRLSARDALANPYFAPRPEAAEERCDAWNTLRGDLDKVQMGVATPDQLRGTYAAATASTAP-------RGLVVPSXXXXXXXXRQSRHQEDHNG--RGDQGMGRPGYASXXXXXXXXXXXXGHSQAL------AVELAVELPLGAPVVPDLELKARTDGDTRGDRARGGAIGGGGYHREHSQSPRGGHRRRSPVHSR 648
            +KP KVL+AEGNKGVPLDPAL DLLQGLLKLDSRHRLSARDALA+PYFAPR    +ER DAW TLRGDLDKVQMGVATPDQLRGT+AAA A T P       RGL    XXX       S H   H    R  +   R G  S            G   A        + ++V+LPL  P  P        +   R  RA  G +    + +  S SPRGG RRRSP + R
Sbjct:    7 LKP-KVLAAEGNKGVPLDPALADLLQGLLKLDSRHRLSARDALASPYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPL-KPDPPGGYGAVSVERTGRAGRADRGRLED--HVKTRSPSPRGG-RRRSPANGR 232
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BLAST of mRNA_H-paniculata_contig1650.3702.1 vs. uniprot
Match: D8LK48_ECTSI (Possible Cdc2-related protein kinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LK48_ECTSI)

HSP 1 Score: 156 bits (394), Expect = 2.850e-39
Identity = 114/227 (50.22%), Postives = 128/227 (56.39%), Query Frame = 1 
Query:   13 KVLSAEGNKGVPLDPALGDLLQGLLKLDSRHRLSARDALANPYFAPRPEAAEERCDAWNTLRGDLDKVQMGVATPDQLRGTYAAATASTAP-------RGLVVPSXXXXXXXXRQSRHQEDHNG--RGDQGMGRPGYASXXXXXXXXXXXXGHSQAL------AVELAVELPLGAPVVPDLELKARTDGDTRGDRARGGAIGGGGYHREHSQSPRGGHRRRSPVHSR 648
            KVL+AEGNKGVPLDPAL DLLQGLLKLDSRHRLSARDALA+PYFAPR    +ER DAW TLRGDLDKVQMGVATPDQLRGT+AAA A T P       RGL    XXX       S H   H    R  +   R G  S            G   A        + ++V+LPL  P  P        +   R  RA  G +    + +  S SPRGG RRRSP + R
Sbjct: 1623 KVLAAEGNKGVPLDPALADLLQGLLKLDSRHRLSARDALASPYFAPRHGQHDERLDAWVTLRGDLDKVQMGVATPDQLRGTFAAANAPTGPXXXXXXXRGLADAXXXXLSPRGGPSGHPSQHGRPQRDRKEEERAGRRSHADKARESRRARGRGVATPSPPREGLHISVQLPL-KPDPPGGYGAVSVERTGRAGRADRGRLED--HVKTRSPSPRGG-RRRSPANGR 1845
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig1650.3702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FKT1_ECTSI1.140e-4250.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LK48_ECTSI2.850e-3950.22Possible Cdc2-related protein kinase n=2 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig1650contigH-paniculata_contig1650:1901..3095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score156.8
Seed ortholog evalue1.5e-35
Seed eggNOG ortholog2880.D8LK48
KEGG rclassRC00003,RC00060,RC00181,RC00496
KEGG koko:K00924,ko:K06101,ko:K11423,ko:K16675
KEGG ReactionR03875,R03938,R04866,R04867
KEGG Pathwayko00310,ko04391,map00310,map04391
Hectar predicted targeting categoryother localisation
EggNOG free text desc.uterine gland development
EggNOG OGsCOG2940@1,KOG0594@1,KOG0594@2759,KOG1083@2759
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_002420.1
EC2.1.1.43,2.3.1.225
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03036
Exons2
Model size843
Cds size843
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929314.76186-CDS-H-paniculata_contig1650:1900..20741622929314.76186-CDS-H-paniculata_contig1650:1900..2074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1650 1901..2074 +
1691480811.7136521-CDS-H-paniculata_contig1650:1900..20741691480811.7136521-CDS-H-paniculata_contig1650:1900..2074Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1650 1901..2074 +
1622929314.7742658-CDS-H-paniculata_contig1650:2426..30951622929314.7742658-CDS-H-paniculata_contig1650:2426..3095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1650 2427..3095 +
1691480811.7333138-CDS-H-paniculata_contig1650:2426..30951691480811.7333138-CDS-H-paniculata_contig1650:2426..3095Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig1650 2427..3095 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig1650.3702.1prot_H-paniculata_contig1650.3702.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig1650 1901..3095 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig1650.3702.1

>prot_H-paniculata_contig1650.3702.1 ID=prot_H-paniculata_contig1650.3702.1|Name=mRNA_H-paniculata_contig1650.3702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=281bp
MKPMKVLSAEGNKGVPLDPALGDLLQGLLKLDSRHRLSARDALANPYFAP
RPEAAEERCDAWNTLRGDLDKVQMGVATPDQLRGTYAAATASTAPRGLVV
PSPSPPPPPPRQSRHQEDHNGRGDQGMGRPGYASSPSPPPPPPRNGGHSQ
ALAVELAVELPLGAPVVPDLELKARTDGDTRGDRARGGAIGGGGYHREHS
QSPRGGHRRRSPVHSRTRDGGDRNNERDREIHREGRERDRKRKRDRERER
GRDRSRGERSGSGKDHRRNSRSRGEGSYHR*
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mRNA from alignment at H-paniculata_contig1650:1901..3095+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig1650.3702.1 ID=mRNA_H-paniculata_contig1650.3702.1|Name=mRNA_H-paniculata_contig1650.3702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1195bp|location=Sequence derived from alignment at H-paniculata_contig1650:1901..3095+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACCCATGAAGGTACTGTCGGCGGAAGGCAATAAAGGTGTCCCCCT
CGATCCAGCGTTGGGTGACCTTCTGCAAGGTCTGCTCAAGCTCGACTCGA
GGCATCGTCTGAGCGCGCGGGACGCCCTGGCCAATCCGTATTTCGCACCC
CGTCCTGAGGCGGCAGAGGAGAGGGTGAGAAAATACCCAAAAGGCTCGAT
TGGCGCTGTAGTAGTTCTATCTAGAGTAGTTCATTTCTGTGAATGTGCGC
AGTGGTGACAAAATGGGTCCGTCGCATAGGAATACAGAAGGCTGTATTTT
TCGAGTCGCATATATGACCCGTCGCCTCTTGCTTTGCGAACTCCAGGCTT
GTTTCGCTGTACCAGTTTCTTCACAAAGCTCCCTATACGAAAGACGGATG
AAGTATAACTGGTACGGGGGCATTTTTGCTAATGTAGCTTCGATATTATC
TGTCCTTGACGGTTCATAAACACACCATTCCCCGTGCACACCCTCCTCCG
TGGATTGAACTCTCGATATGTCACAGTGCGATGCTTGGAACACTTTGAGG
GGCGATCTGGACAAGGTCCAGATGGGAGTAGCCACGCCAGACCAACTTCG
CGGCACCTACGCGGCCGCGACCGCCTCAACCGCCCCGCGCGGACTCGTCG
TTCCATCGCCCTCCCCGCCGCCCCCGCCACCCCGGCAGAGCAGGCACCAG
GAAGACCACAACGGGAGAGGGGATCAGGGGATGGGTCGACCCGGGTATGC
CTCGTCTCCATCTCCCCCTCCTCCCCCGCCACGCAACGGGGGACACTCGC
AAGCTCTAGCTGTAGAGCTAGCTGTGGAGCTTCCGCTGGGAGCACCGGTG
GTCCCTGATCTAGAGTTGAAGGCCCGTACCGATGGAGATACTCGAGGCGA
TCGGGCACGCGGGGGTGCGATCGGGGGCGGCGGGTATCACAGGGAGCACA
GTCAAAGTCCACGAGGTGGTCACAGACGGCGTAGCCCTGTGCATAGCAGG
ACCAGAGACGGCGGGGATCGGAATAATGAAAGAGATAGGGAAATACATAG
GGAGGGTAGGGAGAGAGACAGAAAAAGAAAGCGCGACCGCGAGAGAGAAA
GAGGCAGGGACAGGTCACGCGGCGAGCGTTCTGGTTCTGGGAAAGATCAT
AGGCGGAATTCCCGCTCTCGTGGGGAGGGCAGCTATCACAGATAG
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Coding sequence (CDS) from alignment at H-paniculata_contig1650:1901..3095+

>mRNA_H-paniculata_contig1650.3702.1 ID=mRNA_H-paniculata_contig1650.3702.1|Name=mRNA_H-paniculata_contig1650.3702.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1686bp|location=Sequence derived from alignment at H-paniculata_contig1650:1901..3095+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAACCCATGAAGGTACTGTCGGCGGAAGGCAATAAAGGTGTCCCCCT
CGATCCAGCGTTGGGTGACCTTCTGCAAGGTCTGCTCAAGCTCGACTCGA
GGCATCGTCTGAGCGCGCGGGACGCCCTGGCCAATCCGTATTTCGCACCC
CGTCCTGAGGCGGCAGAGGAGAGGATGAAACCCATGAAGGTACTGTCGGC
GGAAGGCAATAAAGGTGTCCCCCTCGATCCAGCGTTGGGTGACCTTCTGC
AAGGTCTGCTCAAGCTCGACTCGAGGCATCGTCTGAGCGCGCGGGACGCC
CTGGCCAATCCGTATTTCGCACCCCGTCCTGAGGCGGCAGAGGAGAGGTG
CGATGCTTGGAACACTTTGAGGGGCGATCTGGACAAGGTCCAGATGGGAG
TAGCCACGCCAGACCAACTTCGCGGCACCTACGCGGCCGCGACCGCCTCA
ACCGCCCCGCGCGGACTCGTCGTTCCATCGCCCTCCCCGCCGCCCCCGCC
ACCCCGGCAGAGCAGGCACCAGGAAGACCACAACGGGAGAGGGGATCAGG
GGATGGGTCGACCCGGGTATGCCTCGTCTCCATCTCCCCCTCCTCCCCCG
CCACGCAACGGGGGACACTCGCAAGCTCTAGCTGTAGAGCTAGCTGTGGA
GCTTCCGCTGGGAGCACCGGTGGTCCCTGATCTAGAGTTGAAGGCCCGTA
CCGATGGAGATACTCGAGGCGATCGGGCACGCGGGGGTGCGATCGGGGGC
GGCGGGTATCACAGGGAGCACAGTCAAAGTCCACGAGGTGGTCACAGACG
GCGTAGCCCTGTGCATAGCAGGACCAGAGACGGCGGGGATCGGAATAATG
AAAGAGATAGGGAAATACATAGGGAGGGTAGGGAGAGAGACAGAAAAAGA
AAGCGCGACCGCGAGAGAGAAAGAGGCAGGGACAGGTCACGCGGCGAGCG
TTCTGGTTCTGGGAAAGATCATAGGCGGAATTCCCGCTCTCGTGGGGAGG
GCAGCTATCACAGATAGTGCGATGCTTGGAACACTTTGAGGGGCGATCTG
GACAAGGTCCAGATGGGAGTAGCCACGCCAGACCAACTTCGCGGCACCTA
CGCGGCCGCGACCGCCTCAACCGCCCCGCGCGGACTCGTCGTTCCATCGC
CCTCCCCGCCGCCCCCGCCACCCCGGCAGAGCAGGCACCAGGAAGACCAC
AACGGGAGAGGGGATCAGGGGATGGGTCGACCCGGGTATGCCTCGTCTCC
ATCTCCCCCTCCTCCCCCGCCACGCAACGGGGGACACTCGCAAGCTCTAG
CTGTAGAGCTAGCTGTGGAGCTTCCGCTGGGAGCACCGGTGGTCCCTGAT
CTAGAGTTGAAGGCCCGTACCGATGGAGATACTCGAGGCGATCGGGCACG
CGGGGGTGCGATCGGGGGCGGCGGGTATCACAGGGAGCACAGTCAAAGTC
CACGAGGTGGTCACAGACGGCGTAGCCCTGTGCATAGCAGGACCAGAGAC
GGCGGGGATCGGAATAATGAAAGAGATAGGGAAATACATAGGGAGGGTAG
GGAGAGAGACAGAAAAAGAAAGCGCGACCGCGAGAGAGAAAGAGGCAGGG
ACAGGTCACGCGGCGAGCGTTCTGGTTCTGGGAAAGATCATAGGCGGAAT
TCCCGCTCTCGTGGGGAGGGCAGCTATCACAGATAG
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