mRNA_H-paniculata_contig16488.3696.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig16488.3696.1
Unique NamemRNA_H-paniculata_contig16488.3696.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig16488.3696.1 vs. uniprot
Match: D8LSM7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSM7_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 1.320e-44
Identity = 81/119 (68.07%), Postives = 98/119 (82.35%), Query Frame = 2 
Query:    8 GAGGGFTRGLPLVNFALMMLAYVKLLTVRNGQLEDDIRVLRGLEIRGRNCEWVEQLVDSVVFGKMVGCPWWVGILAFLTSRLPNHEATKTVMASENKLKTAGMTLLNLAIGRTPGAEEE 364
            GAGG   R LPLV   ++++AYVKLL V+NGQLEDD+R+L GL+IRG +CEW+E+ VDSVVFG MVGCPWW G+LA   S LPNHE TK VMAS++KLKT GMTLLN AIGRTPGA+++
Sbjct:  504 GAGGQLGRALPLVKVLVLVMAYVKLLVVKNGQLEDDVRILSGLKIRGYDCEWIERGVDSVVFGMMVGCPWWAGLLAVAFSLLPNHEVTKKVMASDDKLKTLGMTLLNKAIGRTPGADDD 622
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BLAST of mRNA_H-paniculata_contig16488.3696.1 vs. uniprot
Match: A0A835YJH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH6_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.230e-6
Identity = 28/61 (45.90%), Postives = 41/61 (67.21%), Query Frame = 2 
Query:   50 FALMMLAYVKLLTVRNGQLEDDIRVLRGLEIRGRNCEWVEQLVDSVVFGKMVGCPWWVGIL 232
            FAL + AY +LL+VR+ QL  D+RVL GL++ G    W+E +VDS ++ +M+G P W   L
Sbjct:  261 FALYIGAYAQLLSVRHAQLGGDVRVLSGLKLGGVGLGWLELVVDSALYARMLGLPRWTAFL 321
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BLAST of mRNA_H-paniculata_contig16488.3696.1 vs. uniprot
Match: A0A6H5KS72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KS72_9PHAE)

HSP 1 Score: 57.8 bits (138), Expect = 3.990e-6
Identity = 27/45 (60.00%), Postives = 36/45 (80.00%), Query Frame = 2 
Query:    8 GAGGGFTRGLPLVNFALMMLAYVKLLTVRNGQLEDDIRVLRGLEI 142
            GAGG   R LPLV   ++++AYVKLL V+NGQLEDD+R+L GL++
Sbjct:  163 GAGGQLGRVLPLVKVLVLVMAYVKLLVVKNGQLEDDVRILSGLKV 207
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig16488.3696.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSM7_ECTSI1.320e-4468.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YJH6_9STRA3.230e-645.90Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A6H5KS72_9PHAE3.990e-660.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig16488contigH-paniculata_contig16488:996..4331 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1123
Cds size429
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig16488.3696.1prot_H-paniculata_contig16488.3696.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig16488 1054..3695 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929314.213777-UTR-H-paniculata_contig16488:995..10531622929314.213777-UTR-H-paniculata_contig16488:995..1053Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16488 996..1053 +
1691480811.4813704-UTR-H-paniculata_contig16488:995..10531691480811.4813704-UTR-H-paniculata_contig16488:995..1053Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16488 996..1053 +
1622929314.2672796-UTR-H-paniculata_contig16488:3695..43311622929314.2672796-UTR-H-paniculata_contig16488:3695..4331Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16488 3696..4331 +
1691480811.5197484-UTR-H-paniculata_contig16488:3695..43311691480811.5197484-UTR-H-paniculata_contig16488:3695..4331Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig16488 3696..4331 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929314.2262278-CDS-H-paniculata_contig16488:1053..11341622929314.2262278-CDS-H-paniculata_contig16488:1053..1134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16488 1054..1134 +
1691480811.4896538-CDS-H-paniculata_contig16488:1053..11341691480811.4896538-CDS-H-paniculata_contig16488:1053..1134Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16488 1054..1134 +
1622929314.2363584-CDS-H-paniculata_contig16488:2666..28311622929314.2363584-CDS-H-paniculata_contig16488:2666..2831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16488 2667..2831 +
1691480811.5007007-CDS-H-paniculata_contig16488:2666..28311691480811.5007007-CDS-H-paniculata_contig16488:2666..2831Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16488 2667..2831 +
1622929314.2544641-CDS-H-paniculata_contig16488:3512..36951622929314.2544641-CDS-H-paniculata_contig16488:3512..3695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16488 3513..3695 +
1691480811.5108204-CDS-H-paniculata_contig16488:3512..36951691480811.5108204-CDS-H-paniculata_contig16488:3512..3695Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig16488 3513..3695 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig16488.3696.1

>prot_H-paniculata_contig16488.3696.1 ID=prot_H-paniculata_contig16488.3696.1|Name=mRNA_H-paniculata_contig16488.3696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=143bp
MMLAYVKLLTVRNGQLEDDIRVLRGLEIRGRNCEWVEQLVDSVVFGKMVG
CPWWVGILAFLTSRLPNHEATKTVMASENKLKTAGMTLLNLAIGRTPGAE
EEEENDDAGEGGESRGEDPKSPPTKLSKMAKVAAVATGITDS*
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mRNA from alignment at H-paniculata_contig16488:996..4331+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig16488.3696.1 ID=mRNA_H-paniculata_contig16488.3696.1|Name=mRNA_H-paniculata_contig16488.3696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3336bp|location=Sequence derived from alignment at H-paniculata_contig16488:996..4331+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCAGGAGGGGCAGGAGGAGGATTCACGCGCGGGCTTCCACTGGTTAATT
TTGCCCTGATGATGCTTGCGTACGTGAAGCTGTTGACCGTGCGGAACGGG
CAGCTGGAGGATGACATTCGAGTACTGAGGGGTTTGGAGGTGGGTATGAG
GCGGGGAGGGTAGGGAGGGCAGGGAGGGGAATTCTTGTGTCTGTCTGTCT
GTCTGTCTGTCAGTATTCGCTCTCTAAGACCGTAATATATAAAGCACCAT
AACGTGGGCTTTCATGCTAACTTAACAACTAGGAGCAGGCTGCTTTTCGT
GGTGCCCTGGAAGTTGATTAATTTTGATGTTTCGAGTGAGACAAAGGGAG
ATCAATAATTTTTCATGGGTGCCAATCAACCATCAGTATGTTTACTCGTG
TTTGTGTAATCTCTGTGCCTCGGACCATCCACGACTGCAAATAATACTCG
TGAATCGAATGGAACAGGGGTAGGTACGTTATGCCATGTGTCCGTTCATT
CTGAAACTCAGGCGAATGCTTTCAATTTTTTTGTGAAAACCATTTGTAAG
TATTCGTATTTGTCCGGGGGATGAATGTGTTTTGACTCTCGTGCGGACTC
CCCCCCCTGTAAAGGGACTCTCTGCAAAACCCTTACTTCGCTAAGTTCCC
ATCTACCCTTGTTGGCATTCCATACCTAGCTTAGTACGTCCTTTGATGAA
TGCTCGCTACAGACACACAACGTGACTTGTTTTGATGAGCGATGTTCGAA
GTTTGTTAGGAAGCTGCTACGGTGCTGTTTTGTCTTTCGCTTGAGCGCAC
CTCTTGTGTTGGTTGTAGGTTGGCGATGGGCATATGTAGCCGTGAGTGTG
GGCTGCTCAGCGCGTTGCGTTTGTGTAATTTAATTACTGCATAGTCCCCC
CCTCATATTATCTTTGACAGTTGCGGGTGGCCATTTATTGCCATGGTTCT
GGACTAAACAGCGCTAGCATGGCTTGTATAATGTATGTATACAGGTGTTG
CAGAGTATAGGTGAGGTATGTTGGGGGAATCAATCCGGTGCGTCTGCTTT
GATGATGGGGTTCGAGGGTGATGATGTCATTGTGCTTGCGTCGTTGCTCG
GTCACGCTGTATACGTAGGCATTTGTAGGCTTGATACGTGAGTGATGCAG
TGGTATTTCCCTGCTAGATGTCGTAGGTTAGTCCATTTCACGTGCTGTTT
ACTCTCCAAGTGGTTGAATAATCCAGGTACTCGGGCGTGAATAAAGTTTA
TGAATCGTCGTGTATGATGGTGTTGACGTCCAGGCCGTTTTGTTCACTTA
GCATTTAGAACGGCAGCCGTAGAATTATATTCAACAATATATTTTTTTGG
GGGGGGGTTTTAACCGCCGGAAGGCTAAGGCAAAAAACCTTTATCCGATG
CTTCCATACCGCAGTAATTCTACCGCAGTATTTCTACATTTTCAACAATA
GATGCCCCCCCTAATGATTTTTTTTTTTTTGCTTAGAAGTTTACATAAAC
GAAGTTTGAAGTGAGCTGTATAGGCACAACGGAGTTACTGTATGAGCTCC
AGAGTCGTAGTTCAACTAACTGTGGAAGGATTAACTTCGAGACCCCCCCC
CTCCCCCCACTCCCCCCGATCCTCCCCTACCGCTTGCGCCGCCCTCACCC
GCACCCTTCATAAAACTCAAGATTCGGGGACGTAACTGCGAGTGGGTAGA
GCAATTGGTTGATAGTGTGGTGTTCGGCAAGATGGTCGGGTGTCCTTGGT
GGGTGGGCATTCTGGCGTTCCTCACATCCCGGCTTCCGAATCACGAGGCT
ACCAAGACAGTTATGGCGAGCGAGAACAAGCTGAAGGTGTGGCGTCAAAC
ATAAGTATTAGCACTTTTTGTATCCTTTTTAAGTCTGCATCGTCACGGCT
ATATCTTACTGCCGTCGGCAAATGTGAGACTGAAAAACGTCCGAGCGTTG
CCATTCGAACGCCTACAACTTGAGCTTTCGAATGGATTGTATCAAAAGAA
ACGAATATTTTCGGAATTGGTTCAAGAAAAAGTCATCAGATTTTTTTTTT
TTTTTTTTTGGCAGTCTCATCTTTTTCAGAAATAGCGACATCGGCCAAAC
ACCTGCCAATGATGGTGAGTAATCGGCGATATCGTGCCTCGAAACTTCCG
ATGAACAAATAGCTTGTTGACTTGGATTATTTGGCGCCAACGAGAGCCCT
GCGTAAAAATAACCTAAAATATGTGTGTTCCCGAGGTGATTCGAACATGA
TTTGTAAGGCGTTTTGAAGTAGATTTCGATCAGTACTCGGAGAAGAGCAT
TCCACATAATATTTCGGCCGCGGCGACTGATTCATGGATTCATGGATTAA
TGGAGAATATCATAACGAGCGTATGCTTTGGTTGGCACGAAGGAATCTAA
CAGAGCAAAACCGCTTTTACGTATAACTTGTTTCAAAAAAATTTCGTTCC
TCAACCTCTTGCGACGCTTTCGCTCCCCCCTTCCCAACCCCCGCGCTCAT
CCCGCCGCCTATTATAGACTGCAGGCATGACGCTGCTAAACCTTGCTATA
GGTCGTACTCCAGGGGCGGAGGAAGAGGAGGAAAACGATGATGCCGGGGA
GGGGGGCGAAAGCAGGGGTGAGGACCCAAAAAGCCCTCCCACAAAATTGT
CCAAGATGGCAAAGGTTGCAGCGGTGGCGACAGGCATCACGGACTCGTGA
TGAAAGAAAACGAAAGAAAATGTGCTTGCAGGGTAGTGGGGGGGGGCATC
GTCAATACATGAACAGTGCCCTGTGTGTCTTTTCCGTCGCTTCTGACAAG
CTGGTTGAACGAGTGATTAGAAAAGTTATTTGCGTGGTCGCAGAGCGTTG
TTGTCCCTTGCCACAGTACGGTTTGCTATATTATTGTGTCATCCTTATGT
ACTACCCTCTGTTTATTGGAGGCCGAACGTCAGCTATGCGAAATATGCCC
ACCGAGTAAGTTGAATGCTACACTATTCAGCGGTTCGATGTCGTTTGTTT
TTGCATATTTCGTATGGCGTCGCCGTGGCGATAATTTTATGTCGTCCTGT
TTGGTAGTCGGGGTCTGGCAATGGTGGCTTCATTAGCCAAATATTTTAGT
GCAAGTGTGGCATCGCTTTTGTCCTTTGGGATGCGAAAAAAACAGTACCT
CAGGTGGGTGCGTGCGATGTGTTCCCTATCATCAACGAGGGATCAAACAC
AACCCGAATTTCCCTCAATATTTCATATATATTATTATTTAATCTCCCAG
GCCTAATTTACAGACCATGATATTTCAAGTCGTTTCAGGGGCCATGTTCG
AACTGCGTGCTAGAGTAACATAAGTGCACTTCCATC
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Coding sequence (CDS) from alignment at H-paniculata_contig16488:996..4331+

>mRNA_H-paniculata_contig16488.3696.1 ID=mRNA_H-paniculata_contig16488.3696.1|Name=mRNA_H-paniculata_contig16488.3696.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=858bp|location=Sequence derived from alignment at H-paniculata_contig16488:996..4331+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGCTTGCGTACGTGAAGCTGTTGACCGTGCGGAACGGGCAGCTGGA
GGATGACATTCGAGTACTGAGGGGTTTGGAGATGATGCTTGCGTACGTGA
AGCTGTTGACCGTGCGGAACGGGCAGCTGGAGGATGACATTCGAGTACTG
AGGGGTTTGGAGATTCGGGGACGTAACTGCGAGTGGGTAGAGCAATTGGT
TGATAGTGTGGTGTTCGGCAAGATGGTCGGGTGTCCTTGGTGGGTGGGCA
TTCTGGCGTTCCTCACATCCCGGCTTCCGAATCACGAGGCTACCAAGACA
GTTATGGCGAGCGAGAACAAGCTGAAGATTCGGGGACGTAACTGCGAGTG
GGTAGAGCAATTGGTTGATAGTGTGGTGTTCGGCAAGATGGTCGGGTGTC
CTTGGTGGGTGGGCATTCTGGCGTTCCTCACATCCCGGCTTCCGAATCAC
GAGGCTACCAAGACAGTTATGGCGAGCGAGAACAAGCTGAAGACTGCAGG
CATGACGCTGCTAAACCTTGCTATAGGTCGTACTCCAGGGGCGGAGGAAG
AGGAGGAAAACGATGATGCCGGGGAGGGGGGCGAAAGCAGGGGTGAGGAC
CCAAAAAGCCCTCCCACAAAATTGTCCAAGATGGCAAAGGTTGCAGCGGT
GGCGACAGGCATCACGGACTCGTGAACTGCAGGCATGACGCTGCTAAACC
TTGCTATAGGTCGTACTCCAGGGGCGGAGGAAGAGGAGGAAAACGATGAT
GCCGGGGAGGGGGGCGAAAGCAGGGGTGAGGACCCAAAAAGCCCTCCCAC
AAAATTGTCCAAGATGGCAAAGGTTGCAGCGGTGGCGACAGGCATCACGG
ACTCGTGA
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